Gosain, T.P., Singh,M., Singh, C., Thakur, K. and Singh, R*. Disruption of MenT2 toxin impairs the growth of Mycobacterium tuberculosis in guinea pigs. Microbiology, 168 (11) 2022, doi: 10.1099/mic.0.001246.
Singh, P., Rawat, S., Agrahari, A.K., Singh, M., Chugh, S., Gurcha, S., Singh, A., Abrahams, K., Besra, G.S., Asthana, S., Rawat, D.S. and Singh, R*. NSC19723, a Thiacetazone-like Benzaldehyde Thiosemicarbazone Improves the Efficacy of TB Drugs In Vitro and In Vivo. Microbiology Spectrum, 2022, doi:10.1128/spectrum.02592-22.
Ahmed, S., Chattopadhyay, G., Manjunath, K., Bhasin, M., Singh, N., Rasool, M., Das, S., Rana, V., Khan, N., Mitra, D., Asok, A., Singh, R. and Varadarajan, R. Combining cysteine scanning with chemical labeling to map protein-protein interactions and infer bound structure in an intrinsically disordered region. Frontiers in Molecular Biosciences, 2022, https://doi.org/10.3389/fmolb.2022.997653.
Sindhu, G., Kholiya R., Kidwai, S., Singh, P., Singh, R., and Rawat, D.S. Design and synthesis of benzimidazole derivatives as antimycobacterial agents. J Biochem Mol Toxicol, 2022, 36(9): e23123, doi: 10.1002/jbt.23123.
Mehdi F, Chowdhury SR, Yadav S, Kansana JS, Sinha SK, Das SJ, Lodha R, Prakash JAJ, Lamminimäki U, Batra G. Generation of a Large Repertoire of Monoclonal Antibodies against Dengue Virus NS1 Antigen and the Development of a Novel NS1 Detection Enzyme-Linked Immunosorbent Assay. J Immunol, 5.422, 209, 10, 2054-2067, 10.4049/jimmunol.2200251.
Chauhan P, Datta I, Dhiman A, Shankar U, Kumar A, Vashist A, Sharma TK, Tyagi JS. DNA Aptamer Targets Mycobacterium tuberculosis DevR/DosR Response Regulator Function by Inhibiting Its Dimerization and DNA Binding Activity. ACS Infect Dis. 5.578, 10.1021/acsinfecdis.2c00414.
Binayke A, Zaheer A, Dandotiya J, Gupta SK, Mani S, Tripathy MR, Madan U, Shrivastava T, Kumar Y, Pandey AK, Rathore DK, Awasthi A. Proinflammatory Innate Cytokines and Distinct Metabolomic Signatures Shape the T Cell Response in Active COVID-19. Vaccines (Basel), 10, 10, 1762, 10.3390/vaccines10101762
Awasthi D, Nagarkoti S, Sadaf S, Aggarwal H, Gupta SK, Chandra T, Kumar Y, Kumar S, Dikshit M. Modulations in human neutrophil metabolome and S-glutathionylation of glycolytic pathway enzymes during the course of extracellular trap formation. Biochim Biophys Acta Mol Basis Dis. 166581, 10.1016/j.bbadis.2022.166581.
Kasarla SS, Borse SP, Kumar Y, Sharma N, Dikshit M., In vitro effect of Withania somnifera, AYUSH-64, and remdesivir on the activity of CYP-450 enzymes: Implications for possible herb-drug interactions in the management of COVID-19. Front Pharmacol. 973768, 13, 10.3389/fphar.2022.973768,
Self A, Chen Q, Desiraju BK, Dhariwal S, Gleed AD, Mishra D, Thiruvengadam R, Chandramohan V, Craik R, Wilden E, Khurana A; CALOPUS Study Group, Bhatnagar S, Papageorghiou AT, Noble JA. Developing Clinical Artificial Intelligence for Obstetric Ultrasound to Improve Access in Underserved Regions: Protocol for a Computer-Assisted Low-Cost Point-of-Care UltraSound (CALOPUS) Study. JMIR Res Protoc. 7.08, 11, 9, e37374, 10.2196/37374
Gleed AD, Chen Q, Jackman J, Mishra D, Chandramohan V, Self A, Bhatnagar S, Papageorghiou AT, Noble JA. , Automatic Image Guidance for Assessment of Placenta Location in Ultrasound Video Sweeps. Ultrasound Med Biol., 3.694, S0301-5629, 00529-4, 22, 10.1016/j.ultrasmedbio.2022.08.006
Halder S, Ghosh S, Chattopadhyay J, Chatterjee S. Understanding noise in cell signalling in the prospect of drug-targets. J Theor Biol. 2.691, 111298, 555, 10.1016/j.jtbi.2022.111298.
Rizvi ZA, Babele P, Sadhu S, Madan U, Tripathy MR, Goswami S, Mani S, Kumar S, Awasthi A, Dikshit M. Prophylactic treatment of Glycyrrhiza glabra mitigates COVID-19 pathology through inhibition of pro-inflammatory cytokines in the hamster model and NETosis. Front Immunol. 7.561, 13, 945583, 10.3389/fimmu.2022.945583
Kumar CS, Singh B, Rizvi ZA, Parray HA, Verma JK, Ghosh S, Mukhopadhyay A, Awasthi A, Shrivastava T, Banerjee M. Virus-Like Particles of SARS-CoV-2 as Virus Surrogates: Morphology, Immunogenicity, and Internalization in Neuronal Cells. ACS Infect Dis, 5.084, acsinfecdis.2c00217, 10.1021/acsinfecdis.2c00217.
Kumar S, Mehrotra T, Talukdar D, Verma J, Chandra Karmakar B, Paul S, Chaudhuri S, Kumari Pragasam A, Bakshi S, Kumari S, Chawla M, Purohit A, Porey Karmakar S, Mutreja A, Banerjee S, Ray A, Ramamurthy T, Mukhopadyay AK, Das B., Region-specific genomic signatures of multidrug-resistant Helicobacter pylori isolated from East and South India.Gene, 3.688, 847, 146857, 10.1016/j.gene.2022.146857.
Agarwal S, Kaur S, Asuru TR, Joshi G, Shrimali NM, Singh A, Singh ON, Srivastva P, Shrivastava T, Vrati S, Surjit M, Guchhait P. Dietary alpha-ketoglutarate inhibits SARS CoV-2 infection and rescues inflamed lungs to restore O2 saturation by inhibiting pAkt. Clin Transl Med. 8.554, 12, 9, e1041, 10.1002/ctm2.1041.
Dey A, Yadav M, Kumar D, Dey AK, Samal S, Tanwar S, Sarkar D, Pramanik SK, Chaudhuri S, Das A., A combination therapy strategy for treating antibiotic resistant biofilm infection using a guanidinium derivative and nanoparticulate Ag(0) derived hybrid gel conjugate. Chem Sci, 9.969, 13, 34, 10103-10118, 10.1039/d2sc02980d.
Kumar P, Soory A, Mustfa SA, Sarmah DT, Devvanshi H, Chatterjee S, Bossis G, Ratnaparkhi GS, Srikanth CV. Bidirectional regulation between AP-1 and SUMOylation pathway genes modulates inflammatory signaling during Salmonella infection.J Cell Sci. , 5.235, 135, 16, jcs260096, 10.1242/jcs.260096.
Misra P, Kant S, Guleria R, Rai SK, Jaiswal A, Mandal S, Medigeshi GR, Ahmad M, Rahman A, Sangral M, Yadav K, Bairwa M, Haldar P, Kumar P. Antibody Response to SARS-CoV-2 among COVID-19 Confirmed Cases and Correlates with Neutralizing Assay in a Subgroup of Patients in Delhi National Capital Region, India, Vaccines (Basel), 10, 8, 10.3390/vaccines10081312.
Garg S, Raj N, Lukose A, Jamwal D, Parray HA, Kumar S, Dhyani S, Jakhar K, Sonar S, Tiwari M, Reema, Mani S, Bhattacharyya S, Sharma C, Shrivastava T, Kumar R. Characterization of a broadly cross reactive tetravalent human monoclonal antibody, recognizing conformational epitopes in receptor binding domain of SARS-CoV-2. 3 Biotech, 2.406, 12, 9, 202,10.1007/s13205-022-03272-6.
Khatri R, Parray HA, Siddiqui G, Chiranjivi AK, Raj S, Kaul R, Maithil V, Samal S, Ahmed S. Biophysical and Biochemical Characterization of the Receptor Binding Domain of SARS-CoV-2 Variants. Protein J. 2022 Oct;41(4-5):457-467. doi: 10.1007/s10930-022-10073-6.
Jayesh Kumar Sevak, Suchitra D. Gopinath, Generation of Mesenchymal Stem Cells from Human Umbilical Cord Tissue and their Differentiation into the Skeletal Muscle Lineage, J. Vis. Exp. (JoVE), e63725,doi:10.3791/63725 (2022).
Das, S.; Jain, S.; Ilyas, M.; Anand, A.; Kumar, S.; Sharma, N.;Singh, K.; Mahlawat, R.; Sharma, T.K.;Atmakuri, K. Development of DNA Aptamers to Visualize Release of Mycobacterial Membrane-Derived Extracellular Vesicles in Infected Macrophages. Pharmaceuticals 2022, 15, 45. https://doi.org/10.3390/ ph15010045
Singh N, Sharma N, Singh P, Pandey M, Ilyas M, Sisodiya L, Choudhury T, Gosain TP, Singh R and Atmakuri K. HupB, a nucleoid-associated protein is critical for survival of Mycobacterium tuberculosis under host-mediated stresses and for enhanced tolerance to key first-line antibiotics. Frontiers in Microbiology 2022. doi: 10.3389/fmicb.2022.937970
Thuluva S, Paradkar V, Gunneri SR, Yerroju V, Mogulla R, Turaga K, Kyasani M, Manoharan SK, Medigeshi G, Singh J, Shaman H, Singh C, Rao A V. Evaluation of safety and immunogenicity of receptor-binding domain-based COVID-19 vaccine (Corbevax) to select the optimum formulation in open-label, multicentre, and randomised phase-1/2 and phase-2 clinical trials. EBioMedicine. 11.2, 83, 104217, 10.1016/j.ebiom.2022.104217
Chaudhary D, Singh A, Marzuki M, Ghosh A, Kidwai S, Gosain TP, Chawla K, Gupta SK, Agarwal N, Saha S, Kumar Y, Thakur KG, Singhal A, Singh R. Identification of small molecules targeting homoserine acetyl transferase from Mycobacterium tuberculosis and Staphylococcus aureus.Sci Rep. 4.996, 12, 1, 13801, 10.1038/s41598-022-16468-w.
Bugga P, Mohammed SA, Alam MJ, Katare P, Meghwani H, Maulik SK, Arava S, Banerjee SK. Empagliflozin prohibits high-fructose diet-induced cardiac dysfunction in rats via attenuation of mitochondria-driven oxidative stress. Life Sci. 6.78, 307, 120862, 10.1016/j.lfs.2022.120862.
Siddqui G, Yadav N, Vishwakarma P, Thomas J, Khatri R, Kumar A, Tripathi A, Pramod RK, Vrati S, Samal S. Japanese encephalitis virus induces vasodilation and severe lethality in adult and aged AG129 mice lacking alpha, beta and gamma interferon receptors. Virus Research, 3.303, 319, 198884, 10.1016/j.virusres.2022.198884
Chiranjivi AK, Kumar D, Kumar R, Parray HA, Ahmed S, Kumar CS, Shrivastava T, Banerjee M, Prasad BVV, Das S. Generation of soluble, cleaved, well-ordered, native-like dimers of dengue virus 4 envelope protein ectodomain (sE) suitable for vaccine immunogen design. Int J Biol Macromol. 8.025, 09-07-2022, 217, 19-26, 10.1016/j.ijbiomac.2022.07.028.
Pant A, Maiti TK, Mahajan D, Das B. Human Gut Microbiota and Drug Metabolism. Microb Ecol. 4.552, 23-07-2022, 42005, 10.1007/s00248-022-02081.
Agrahari AK, Dikshit M, Asthana S. Crystallographic mining of ASK1 regulators to unravel the intricate PPI interfaces for the discovery of small molecule. Comput Struct Biotechnol J. 7.271, 11.07.2022, 20, 3734-3754, 10.1016/j.csbj.2022.07.008
Ramamurthy T, Pragasam AK, Taylor-Brown A, Will RC, Vasudevan K, Das B, Srivastava SK, Chowdhury G, Mukhopadhyay AK, Dutta S, Veeraraghavan B, Thomson NR, Sharma NC, Nair GB, Takeda Y, Ghosh A, Dougan G, Mutreja A. Vibrio cholerae O139 genomes provide a clue to why it may have failed to usher in the eighth cholera pandemic. 13, 1, 13864, Nat Microbiol., 17.745, 10.1038/s41467-022-31391-4.
Vikkurthi R, Ansari A, Pai AR, Jha SN, Sachan S, Pandit S, Nikam B, Kalia A, Jit BP, Parray HA, Singh S, Kshetrapal P, Wadhwa N, Shrivastava T, Coshic P, Kumar S, Sharma P, Sharma N, Taneja J, Pandey AK, Sharma A, Thiruvengadam R, Grifoni A, Weiskopf D, Sette A, Bhatnagar S, Gupta N. Inactivated whole-virion vaccine BBV152/Covaxin elicits robust cellular immune memory to SARS-CoV-2 and variants of concern. Nat Microbiol. 2022 Jun 9. doi: 10.1038/s41564-022-01161-5. Nat Microbiol. 17.745.
Pandey M, Tiwari S, Johri S, Biswal BK, Sharma C, Pandey AK. Investigating a putative transcriptional regulatory protein encoded by Rv1719 gene of Mycobacterium tuberculosis. 41,3, 424-433, Protein J. 2.371, 10.1007/s10930-022-10062-9
Hingankar N, Deshpande S, Das P, Rizvi ZA, Wibmer CK, Mashilo P, Ansari MY, Burns A, Barman S, Zhao F, Mukherjee S, Torres JL, Chattopadhyay S, Mehdi F, Sutar J, Rathore DK, Pargai K, Singh J, Sonar S, Jakhar K, Dandotiya J, Bhattacharyya S, Mani S, Samal S, Singh S, Kshetrapal P, Thiruvengadam R, Batra G, Medigeshi G, Ward AB, Bhatnagar S, Awasthi A, Sok D, Bhattacharya J. A combination of potently neutralizing monoclonal antibodies isolated from an Indian convalescent donor protects against the SARS-CoV-2 Delta variant. 18, 4, e1010465, PLoS Pathog.6.823, 10.1371/journal.ppat.1010465.
Meena J, Singhvi P, Srichandan S, Dandotiya J, Verma J, Singh M, Ahuja R, Panwar N, Wani TQ, Khatri R, Siddiqui G, Gupta A, Samal S, Panda AK. RBD decorated PLA nanoparticle admixture with aluminum hydroxide elicit robust and long lasting immune response against SARS-CoV-2. 176, 43-53, Eur J Pharm Biopharm. 5.571.10.1016/j.ejpb.2022.05.008.
Das S, Singh J, Shaman H, Singh B, Anantharaj A, Sharanabasava P, Pandey R, Lodha R, Pandey AK, Medigeshi GR. Pre-existing antibody levels negatively correlate with antibody titers after a single dose of BBV152 vaccination. 13, 1, 3451. Nat. Comm, 14.919,
Sharma S, Tyagi R, Srivastava M, Rani K, Kumar D, Asthana S, Raj VS. Identification and validation of potent inhibitor of Escherichia coli DHFR from MMV pathogen box. J Biomol Struct Dyn. 3.392. 10.1080/07391102.2022.2080113.
Kumar A, Singh S, Gupta SK, Kumar S, Kumar S, Singh R, Thakur L, Kumar M, Kapil A, Kumar Y, Kumar N. Identification of metabolite extraction method for targeted exploration of antimicrobial resistance associated metabolites of Klebsiella pneumoniae. 12, 1, 8939, Sci Rep, 4.739, 10.1038/s41598-022-12153-0.
Das, S. Analysis of domain organization and functional signatures of trypanosomatid keIF4Gs, Mol Cell Biochem. 3.396. 18-05-2022.
Aggarwal S, Raj A, Kumar D, Dash D, Yadav AK. False discovery rate: the Achilles' heel of proteogenomics. Brief Bioinform. 11.62. 09-05-2022.
Surendran H, Kumar S, Narasimhaiah S, Ananthamurthy A, Varghese PS, D'Souza GA, Medigeshi G, Pal R. SARS-CoV-2 infection of human-induced pluripotent stem cells-derived lung lineage cells evokes inflammatory and chemosensory responses by targeting mitochondrial pathways. , J Cell Physiol. , 6.384. 23-04-2022.
Khatri, R., Parraya, H.A., Agrahari, A.K., Rizvi, Z.A., Kaul, R., Raj, S., Asthana, S., Mania, S., Samal, S., Awasthi, A., Ahmed, S., Designing and characterization of a SARS-CoV-2 immunogen with receptor binding motif grafted on a protein scaffold: An epitope-focused vaccine approach, International Journal of Biological Macromolecules, 6.953. 22-04-2022.
Mittal L, Tonk R, Awasthi A, Asthana S. Traversing through the Dynamic Protein-Protein Interaction Landscape and Conformational Plasticity of PD-1 for Small-Molecule Discovery. J Med Chem., 7.446. 14.04.2022.
Yadav, A.K., Banerjee, S.K., Das, B.,Chaudhary, K. Editorial: Systems Biology and Omics Approaches for Understanding Complex Disease Biology, Front. Genet., 3.789.12.04.2022.
Kumari P, Dhiman A, Lavania S, Sharma P, Rath D, Anthwal D, Gupta RK, Kochar A, Sharma N, Gadpayle AK, Taneja RS, Sharma L, Haldar S, Sharma TK, Tyagi JS. Assessment of DNA aptamers targeting GlcB and HspX antigens for application in the diagnosis of abdominal tuberculosis. Tuberculosis (Edinb). 3.131. 04-04-2022.
Chattopadhyay, G., Bhasin. M., Ahmed, S., Gosain, T.P., Ganesan, S., Das, S., Thakur, C., Chandra, N., Singh, R.* and Vardarajan, R. Functional and Biochemical characterization of the MazEF6 Toxin-Antitoxin system of Mycobacterium tuberculosis. Journal of Bacteriology, 2022, e000582, doi: 10.1128/jb.0058-22
Das S, Kumar Y, Sharma S, Ray R, Arava S, Seth S, Agarwal A, Sharma G. , An Untargeted LC-MS based approach for identification of altered metabolites in blood plasma of rheumatic heart disease patients., Sci Rep., 4.996, 12, 1, 5238, 5238
Bir R, Gautam H, Arif N, Chakravarti P, Verma J, Banerjee S, Tyagi S, Mohapatra S, Sood S, Dhawan B, Chaudhry R, Kapil A, Das BK, Das B., Analysis of colistin resistance in carbapenem-resistant Enterobacterales and XDR Klebsiella pneumoniae., Ther Adv Infect Dis. , 2.7, 9, , 20499361221080600, 10.1177/20499361221080650
Varma DA, Singh M, Wakode S, Dinesh NE, Vinaik S, Asthana S, Tiwari M., Structure-based pharmacophore mapping and virtual screening of natural products to identify polypharmacological inhibitor against c-MET/EGFR/VEGFR-2. , J Biomol Struct Dyn., 5.23, , , 1-15, 10.1080/07391102.2022.2042388.
Mehdiratta K, Singh S, Sharma S, Bhosale RS, Choudhury R, Masal DP, Manocha A, Dhamale BD, Khan N, Asokachandran V, Sharma P, Ikeh M, Brown AC, Parish T, Ojha AK, Michael JS, Faruq M, Medigeshi GR, Mohanty D, Reddy DS, Natarajan VT, Kamat SS, Gokhale RS., Kupyaphores are zinc homeostatic metallophores required for colonization of Mycobacterium tuberculosis., Proc Natl Acad Sci U S A. , 12.78, 119, 8, e2110293119, 10.1073/pnas.2110293119.
Soundararajan D, Ramana LN, Shankaran P, Krishnan UM. Nanoparticle-based strategies to target HIV-infected cells. , Colloids Surf B Biointerfaces. , 5.268, 213, , 112405, 10.1016/j.colsurfb.2022.112405.
Purushotham N, Singh M, Paramesha B, Kumar V, Wakode S, Banerjee SK, Poojary B, Asthana S. Design and synthesis of amino acid derivatives of substituted benzimidazoles and pyrazoles as Sirt1 inhibitors. RSC Adv., 4.036, 12, 7, 3809-3827, 10.1039/d1ra06149f.
Aggarwal H, Pathak P, Singh V, Kumar Y, Shankar M, Das B, Jagavelu K, Dikshit M., Vancomycin-Induced Modulation of Gram-Positive Gut Bacteria and Metabolites Remediates Insulin Resistance in iNOS Knockout Mice. , Front Cell Infect Microbiol., 5.79, 11, , 795333, 10.3389/fcimb.2021.795333.
Aggarwal H, Pathak P, Singh V, Kumar Y, Shankar M, Das B, Jagavelu K, Dikshit M., Vancomycin-Induced Modulation of Gram-Positive Gut Bacteria and Metabolites Remediates Insulin Resistance in iNOS Knockout Mice. , Front Cell Infect Microbiol., 5.79, 11, , 795333, 10.3389/fcimb.2021.795333.
Dhochak N, Agrawal T, Shaman H, Khan NA, Kumar P, Kabra SK, Medigeshi GR, Lodha R., Humoral cross-reactivity towards SARS-CoV-2 in young children with acute respiratory infection with low-pathogenicity coronaviruses., J Clin Virol Plus., 3.168, 2, 1, 100061, 10.1016/j.jcvp.2022.100061.
Kaur J, Rawat Y, Sood V, Periwal N, Rathore DK, Kumar S, Kumar N, Bhattacharyya S., Replication of Dengue Virus in K562-Megakaryocytes Induces Suppression in the Accumulation of Reactive Oxygen Species., Front Microbiology, 5.64, 12, , 784070, 10.3389/fmicb.2021.784070.
Sankaradoss A, Jagtap S, Nazir J, Moula SE, Modak A, Fialho J, Iyer M, Shastri JS, Dias M, Gadepalli R, Aggarwal A, Vedpathak M, Agrawal S, Pandit A, Nisheetha A, Kumar A, Bordoloi M, Shafi M, Shelar B, Balachandra SS, Damodar T, Masika MM, Mwaura P, Anzala O, Muthumani K, Sowdhamini R, Medigeshi GR, Roy R, Pattabiraman C, Krishna S, Sreekumar E., Immune profile and responses of a novel dengue DNA vaccine encoding an EDIII-NS1 consensus design based on Indo-African sequences., Mol. Ther, 11.45, 30, 5, 2058-2077, 10.1016/j.ymthe.2022.01.013.
Rizvi ZA, Dalal R, Sadhu S, Binayke A, Dandotiya J, Kumar Y, Shrivastava T, Gupta SK, Agarwal S, Tripathy MR, Rathore DK, Yadav AK, Medigeshi GR, Pandey AK, Samal S, Ashtana S, Awasthi A. Golden Syrian hamster as a model to study cardiovascular complications associated with SARS-CoV-2 infection. , eLife, 8.14, 11, , e73522, 10.7554/eLife.73522
Anantharaj A, Gujjar S, Verma N, Khan NA, Shaman H, Sharanabasava P, Das A, Pandey R, Pandey AK, Medigeshi GR., Resolution of viral load in mild COVID-19 patients is associated with both innate and adaptive immune responses., J Clin Virol. , 3.168, 146, , 105060, 10.1016/j.jcv.2021.105060.
Venkataprasanna KS, Prakash J, Mathapati SS, Bharath G, Banat F, Venkatasubbu GD. Development of chitosan/poly (vinyl alcohol)/graphene oxide loaded with vanadium doped titanium dioxide patch for visible light driven antibacterial activity and accelerated wound healing application., Int J Biol Macromol. , 8.025, 193, Pt B, 1430-1448, 10.1016/j.ijbiomac.2021.10.207.
Gupta P, Kumar N, Garg M., Emerging roles of autophagy in the development and treatment of urothelial carcinoma of the bladder., Expert Opin Ther Targets., 6.902, 25, 9, 787-797, 10.1080/14728222.2021.1992384.
Haider M, Dholakia D, Panwar A, Garg P, Gheware A, Singh D, Singhal K, Burse SA, Kumari S, Sharma A, Ray A, Medigeshi GR, Sharma U, Prasher B, Mukerji M., Transcriptome analysis and connectivity mapping of Cissampelos pareira L. provides molecular links of ESR1 modulation to viral inhibition., Sci Rep., 4.996, 11, 1, 20095, 10.1038/s41598-021-99444-0.
Panwar A, Wangchuk J, Kar M, Lodha R, Medigeshi GR. , Dengue virus replication enhances labile zinc pools by modulation of ZIP8. Cell Microbiol., 3.715, 23, 12, e13395, 10.1111/cmi.13395
Rallapalli S, Guhathakurta S, Bishi DK, Subbarayan R, Mathapati S, Korrapati PS. A critical appraisal of humanized alternatives to fetal bovine serum for clinical applications of umbilical cord derived mesenchymal stromal cells. Biotechnol Lett., 2.461, 43, 10, 2067-2083, 10.1007/s10529-021-03180-4
Sharma V, Dash SK, Govarthanan K, Gahtori R, Negi N, Barani M, Tomar R, Chakraborty S, Mathapati S, Bishi DK, Negi P, Dua K, Singh SK, Gundamaraju R, Dey A, Ruokolainen J, Thakur VK, Kesari KK, Jha NK, Gupta PK, Ojha S. Recent Advances in Cardiac Tissue Engineering for the Management of Myocardium Infarction. Cells, 7.668, 10, 10, 2538, 10.3390/cells10102538
Aggarwal C, Saini K, Reddy ES, Singla M, Nayak K, Chawla YM, Maheshwari D, Singh P, Sharma P, Bhatnagar P, Kumar S, Gottimukkala K, Panda H, Gunisetty S, Davis CW, Kissick HT, Kabra SK, Lodha R, Medigeshi GR, Ahmed R, Murali-Krishna K, Chandele A., Immunophenotyping and Transcriptional Profiling of Human Plasmablasts in Dengue., J. Virol., 4.501, 95, 23, e0061021, 10.1128/JVI.00610-21.
Sharma KB, Chhabra S, Aggarwal S, Tripathi A, Banerjee A, Yadav AK, Vrati S, Kalia M., Proteomic landscape of Japanese encephalitis virus-infected fibroblasts., J Gen Virol. , 3.376, 102, 9, , 10.1099/jgv.0.001657
Kumar A, Sharma P, Sharma N, Kumar Y, Mahajan D. Catalyst free N-formylation of aromatic and aliphatic amines exploiting reductive formylation of CO2 using NaBH4, RSC Adv., , 11, 41, 25777-25787, 10.1039/d1ra04848a.
Verma R, Saha S, Kumar S, Mani S, Maiti TK, Surjit M., RNA-Protein Interaction Analysis of SARS-CoV-2 5' and 3' Untranslated Regions Reveals a Role of Lysosome-Associated Membrane Protein-2a during Viral Infection., mSystems, 6.53, 6, 4, e0064321, 10.1128/mSystems.00643-21.
Mittal L, Kumari A, Srivastava M, Singh M, Asthana S., Identification of potential molecules against COVID-19 main protease through structure-guided virtual screening approach. , J Biomol Struct Dyn., 5.23, 39, 10, 3662-3680, 10.1080/07391102.2020.1768151.
Madhry D, Pandey KK, Kaur J, Rawat Y, Sapra L, Y S RK, Srivastava RK, Bhattacharyya S, Verma B., Role of non-coding RNAs in Dengue virus-host interaction. , Front Biosci (Schol Ed)., 2.436, 13, 1, 44-55, 10.52586/S552.
Lavhale SG, Joshi RS, Kumar Y, Giri AP., Functional insights into two Ocimum kilimandscharicum 4-coumarate-CoA ligases involved in phenylpropanoid biosynthesis., Int J Biol Macromol., 8.025, 181, , 202-210, 10.1016/j.ijbiomac.2021.03.129.
Pandey M, Bansal S, Bar S, Yadav AK, Sokol NS, Tennessen JM, Kapahi P, Chawla G., miR-125-chinmo pathway regulates dietary restriction-dependent enhancement of lifespan in Drosophila., Elife, 8.713, 8, 10, e62621, 10.7554/eLife.62621.
Kaur L, Puri M, Pal Sachdeva M, Mishra J, Nava Saraswathy K., Maternal one carbon metabolism and interleukin-10 &-17 synergistically influence the mode of delivery in women with Early Onset Pre-Eclampsia., Pregnancy Hypertens., 2.494, 24, 79-89, 10.1016/j.preghy.2021.02.011.
Tyagi R, Srivastava M, Singh B, Sharma S, Pandey RP, Asthana S, Kumar D, Raj VS., Identification and validation of potent Mycobacterial proteasome inhibitor from Enamine library. , J Biomol Struct Dyn. , 5.23, 1-11, 10.1080/07391102.2021.1914173.
Arora G, Ghosh S, Chatterjee S., Understanding doxorubicin associated calcium remodeling during triple-negative breast cancer treatment: an in silico study, Explor Target Antitumor Ther., 2.4, 2, , 208, https://doi.org/10.37349/etat.2021.00042.
Ganneru B, Jogdand H, Daram VK, Das D, Molugu NR, Prasad SD, Kannappa SV, Ella KM, Ravikrishnan R, Awasthi A, Jose J, Rao P, Kumar D, Ella R, Abraham P, Yadav PD, Sapkal GN, Shete-Aich A, Desphande G, Mohandas S, Basu A, Gupta N, Vadrevu KM., Th1 skewed immune response of whole virion inactivated SARS CoV 2 vaccine and its safety evaluation., iScience, 5.74, 24, 4, 102298, 10.1016/j.isci.2021.102298.
Dwivedy A, Ashraf A, Jha B, Kumar D, Agarwal N, Biswal BK. De novo histidine biosynthesis protects Mycobacterium tuberculosis from host IFN-γ mediated histidine starvation., Commun Biol., 6.268, 4, 1, 410, 10.1038/s42003-021-01926-4.
Devanga Ragupathi NK, Muthuirulandi Sethuvel DP, Murugan D, Ranjan R, Gautam V, Gupta P, Johnson J, Sharma NC, Mutreja A, Haldar P, Kumar A, Bhatnagar P, Sangal L, Veeraraghavan B. Divergent evolution of Corynebacterium diphtheriae in India: An update from National Diphtheria Surveillance network. PLoS One, 16, 12, e0261435
Saini V, Kalra P, Sharma M, Rai C, Saini V, Gautam K, Bhattacharya S, Mani S, Saini K, Kumar S., A Cold Chain-Independent Specimen Collection and Transport Medium Improves Diagnostic Sensitivity and Minimizes Biosafety Challenges of COVID-19 Molecular Diagnosis. Microbiol Spectr. 9, 3, e0110821
Suri C, Awasthi A, Asthana S. Crystallographic landscape provides molecular insights into the modes of action of diverse ROR-γt modulators. Drug Discov Today. 27, 2, 652-663
Ramachandran Thiruvengadam, Amit Awasthi*,Guruprasad Medigeshi*, Sankar Bhattacharya, Shailendra Mani, Sridhar Sivasubbu, Tripti Shrivastava, Sweety Samal, Deepika Rathna Murugesan, Bapu Koundinya Desiraju, Pallavi Kshetrapal, Rajesh Pandey, Vinod Scaria, Praveen Kumar Malik, Juhi Taneja, Akshay Binayke, Tarini Vohra, Aymaan Zaheer, Deepak Rathore, Naseem Ahmad Khan, Heena Shaman, Shubbir Ahmed, Rajesh Kumar, Suprit Deshpande, Chandru Subramani, Nitya Wadhwa, Nimesh Gupta, Anil K Pandey, Jayanta Bhattacharya, Anurag Agrawal, Sudhanshu Vrati, Shinjini Bhatnagar, Pramod Kumar Garg, Effectiveness of ChAdOx1 nCoV-19 vaccine against SARS-CoV-2 infection during the delta (B.1.617.2) variant surge in India: a test-negative, case-control study and a mechanistic study of post-vaccination immune responses, The Lancet Infectious Diseases
Sarkar S, Kumari D, Gupta SK, Sharma V, Mukhi S, Kamboj P, Sasibhushan V, Rai RK, Jatavallabhula SL, Mahajan D, Kumar Y, Kumar A, Dikshit M. , Saroglitazar and Hepano treatment offers protection against high fat high fructose diet induced obesity, insulin resistance and steatosis by modulating various class of hepatic and circulating lipids. Biomed Pharmacother. 144, 112357
Thiruvengadam R, Desiraju BK, Natchu UCM, Wadhwa N, Sachdeva K, Misra S, Parmar N, Juyal M, Mittal P, Bharti R, Tripathi R, Ramji S, Sachdev HS, Bhatnagar S; GARBH–Ini study team. Gestational weight gain trajectories in GARBH-Ini pregnancy cohort in North India and a comparative analysis with global references. Eur J Clin Nutr.
Khurana H, Srivastava M, Chaudhary D, Gosain TP, Kumari R, Bean AC, Chugh S, Maiti TK, Stephens CE, Asthana S, Singh R., Identification of diphenyl furan derivative via high throughput and computational studies as ArgA inhibitor of Mycobacterium tuberculosis. Int J Biol Macromol. S0141-8130(21)02415-6
Kashyap B, Barge SR, Bharadwaj S, Deka B, Rahman S, Ghosh A, Manna P, Dutta PP, Sheikh Y, Kandimalla R, Samanta SK, Boruwa J, Saikia S, Swargiary D, Kamboj P, Tuli D, Pal U, Borah JC, Banerjee SK, Talukdar NC., Evaluation of therapeutic effect of Premna herbacea in diabetic rat and isoverbascoside against insulin resistance in L6 muscle cells through bioenergetics and stimulation of JNK and AKT/mTOR signaling cascade, Phytomedicine, 93,153761
Mittal L, Tonk RK, Awasthi A, Asthana S. Targeting cryptic-orthosteric site of PD-L1 for inhibitor identification using structure-guided approach , Arch Biochem Biophys. 713, 109059
Perween R, PraveenKumar M, Shrivastava T, Parray HA, Singh V, Singh S, Chiranjivi A, Jakhar K, Sonar S, Tiwari M, Reema, Panchal AK, Sharma C, Rathore DK, Ahamed S, Samal S, Mani S, Bhattacharyya S, Das S, Luthra K, Kumar R. The SARS CoV-2 spike directed non-neutralizing polyclonal antibodies cross-react with Human immunodeficiency virus (HIV-1) gp41. Int Immunopharmacol. 101, PtB, 108187
Mehrotra T, Devi TB, Kumar S, Talukdar D, Karmakar SP, Kothidar A, Verma J, Kumari S, Alexander SM, Retnakumar RJ, Devadas K, Ray A, Mutreja A, Nair GB, Chattopadhyay S, Das B., Antimicrobial resistance and virulence in Helicobacter pylori: Genomic insights. Genomics, 113, 6, 3951-3966
Dutta S, Das B, Ghosh TS, Kumar S, Kaushal RK, Ray P, Suri V, Nair GB. Human Milk Microbiome of Healthy Indian Mothers is Dominated by Genus Pseudomonas. J Hum Lact. 8903344211048410
Rizvi ZA, Dalal R, Sadhu S, Kumar Y, Kumar S, Gupta SK, Tripathy MR, Rathore DK, Awasthi A., High-salt diet mediates interplay between NK cells and gut microbiota to induce potent tumor immunity. Sci Adv. 7, 37, eabg5016
Kumar R, Ahmed S, Parray HA, Das S., Chikungunya and arthritis: An overview., Travel Med Infect Dis.
Kumari A, Mittal L, Srivastava M, Pathak DP, Asthana S., Conformational Characterization of the Co-Activator Binding Site Revealed the Mechanism to Achieve the Bioactive State of FXR., Front Mol Biosci., 8, 658312
Kao C, Surjit M, Ranjith-Kumar CT. Viral Hepatitis: Pathophysiology, Prevention, and Control., Front Cell Infect Microbiol.11, 633580
Srivastava M, Mittal L, Kumari A, Asthana S., Molecular Dynamics Simulations Reveal the Interaction Fingerprint of Remdesivir Triphosphate Pivotal in Allosteric Regulation of SARS-CoV-2 RdRp., Front Mol Biosci., 8, , 639614
Parray HA, Shukla S, Perween R, Khatri R, Shrivastava T, Singh V, Murugavelu P, Ahmed S, Samal S, Sharma C, Sinha S, Luthra K, Kumar R., Inhalation monoclonal antibody therapy: a new way to treat and manage respiratory infections, Appl Microbiol Biotechnol.1-18
Ramana LN, Agarwal V, Nanodiamonds synthesis using sustainable concentrated solar thermal energy: Applications in bioimaging and phototherapy, Nanotechnology.
Rizvi ZA, Dalal R, Sadhu S, Binayke A, Dandotiya J, Kumar Y, Shrivastava T, Gupta SK, Agarwal S, Tripathy MR, Rathore DK, Yadav AK, Medigeshi GR, Pandey AK, Samal S, Ashtana S, Awasthi A., Immunological and cardio-vascular pathologies associated with SARS-CoV2 infection in golden Syrian hamsters.,eLife,11, H2,e73522
Tripathi A, Rawat BS, Addya S, Surjit M, Tailor PB, Vrati S, Banerjee A., Lack of Interferon Regulatory Factor 8 Associated with Restricted IFN-gamma expression Augmented Japanese Encephalitis Virus Replication in the Mouse Brain., Journal of Virology.
Sharma R, Lunge A, Mangla N, Agarwal N, Proteomic Landscape of a Drug-Tolerant Persister Subpopulation of Mycobacterium tuberculosis., J Proteome Res.
Aggarwal S, Tolani P, Gupta S, Yadav AK., Posttranslational modifications in systems biology., Adv Protein Chem Struct Biol., 2021, 127, 93-126
Tolani P, Gupta S, Yadav K, Aggarwal S, Yadav AK. Big data, integrative omics and network biology. Adv Protein Chem Struct Biol., 2021, 17, 127-160
Anand A, Chatterjee B, Dhiman A, Goel R, Khan E, Malhotra A, Santra V, Salvi N, Khadilkar MV, Bhatnagar I, Kumar A, Asthana A, Sharma TK., Complex target SELEX-based identification of DNA aptamers against Bungarus caeruleus venom for the detection of envenomation using a paper-based device., Biosens Bioelectron, 193,113526
Kumar M, Kumar J, Sharma S, Hussain MA, Shelly A, Das B, Yadav AK, Mazumder S., TLR22-mediated activation of TNF-α-caspase-1/IL-1β inflammatory axis leads to apoptosis of Aeromonas hydrophila-infected macrophages., Mol Immunol.,137,114-123
Chauhan S, Rathore DK, Sachan S, Lacroix-Desmazes S, Gupta N, Awasthi A, Vrati S, Kalia M., Japanese Encephalitis Virus Infected Human Monocyte-Derived Dendritic Cells Activate a Transcriptional Network Leading to an Antiviral Inflammatory Response., Front Immunol.12, 638694
Harale B, Kidwai S, Ojha D, Singh M, Chouhan DK, Singh R, Khedkar V, Rode AB., Synthesis and evaluation of antimycobacterial activity of riboflavin derivatives., Bioorg Med Chem Lett., 48,128236
Gupta A, Anand A, Jain N, Goswami S, Ananthraj A, Patil S, Singh R, Kumar A, Shrivastava T, Bhatnagar S, Medigeshi GR, Sharma TK; DBT India Consortium for COVID-19 Research., A novel G-quadruplex aptamer-based spike trimeric antigen test for the detection of SARS-CoV-2., Mol Ther Nucleic Acids.
Panwar S, Kumari A, Kumar H, Tiwari AK, Tripathi P, Asthana S. , Structure-based virtual screening, molecular dynamics simulation and in vitro evaluation to identify inhibitors against NAMPT., J Biomol Struct Dyn.1-13
Sharma PP, Kumar S, Srivastava S, Srivastava M, Jee B, Gorobets NY, Kumar D, Kumar M, Asthana S, Zhang P, Poonam, Zoltner M, Rathi B. , Computational study of novel inhibitory molecule, 1-(4-((2S,3S)-3-amino-2-hydroxy-4-phenylbutyl)piperazin-1-yl)-3-phenylurea, with high potential to competitively block ATP binding to the RNA dependent RNA polymerase of SARS-CoV-2 virus., J Biomol Struct Dyn.1-19
Yadav N, Vishwakarma P, Khatri R, Siddqui G, Awasthi A, Ahmed S, Samal S., Comparative Immunogenicity Analysis of Intradermal versus Intramuscular Administration of SARS-CoV-2 RBD Epitope Peptide-based Immunogen In vivo., Microbes and Infection.
Roy S, Rizvi ZA, Clarke AJ, Macdonald F, Pandey A, Zaiss DMW, Simon AK, Awasthi A., EGFR-HIF1α signaling positively regulates the differentiation of IL-9 producing T helper cells., Nature Communications, 12, 1, 3182
Choudhuri S, Kaur T, Jain S, Sharma C, Asthana S., A review on genotoxicity in connection to infertility and cancer., Chemico-Biological Interactions, 345, , 109531
Kumari A, Mittal L, Srivastava M, Asthana S., Binding mode characterization of 13b in the monomeric and dimeric states of SARS-CoV-2 main protease using molecular dynamics simulations., Journal of Biomolecular Structure and Dynamics,1-19
Halder S, Ghosh S, Chattopadhyay J, Chatterjee S, Bistability in cell signalling and its significance in identifying potential drug targets. , Bioinformatics, btab395
Sarmah DT, Bairagi N, Chatterjee S., The interplay between DNA damage and autophagy in lung cancer: A mathematical study., Biosystems, 206, , 104443
Ramana LN, Mathapati SS, Salvi N, Khadilkar MV, Malhotra A, Santra V, Sharma TK., A paper microfluidic device based colorimetric sensor for the detection and discrimination of elapid versus viper envenomation.,Analyst,, H2,
Kamboj P, Sarkar S, Gupta SK, Bisht N, Kumari D, Alam MJ, Barge S, Kashyap B, Deka B, Bharadwaj S, Rahman S, Dutta PP, Borah JC, Talukdar NC, Banerjee SK, Kumar Y, Methanolic Extract of Lysimachia Candida Lindl. Prevents High-Fat High-Fructose-Induced Fatty Liver in Rats: Understanding the Molecular Mechanism Through Untargeted Metabolomics Study, Front Pharmacol, 12, , 653872
Vijayram R, Damaraju N, Xavier A, Desiraju BK, Thiruvengadam R, Misra S, Chopra S, Khurana A, Wadhwa N; GARBH-Ini Study Group, Rengaswamy R, Sinha H, Bhatnagar S, Comparison of first trimester dating methods for gestational age estimation and their implication on preterm birth classification in a North Indian cohort., BMC Pregnancy Childbirth, 21, 1, 343
Hussain MS, Vashist A, Kumar M, Taneja NK, Gautam US, Dwivedi S, Tyagi JS, Gupta RK., Anti-mycobacterial activity of heat and pH stable high molecular weight protein(s) secreted by a bacterial laboratory contaminant. ,Microb Cell Fact.,21, H2,15
Paul A, Kadnur HB, Ray A, Chatterjee S, Wig N. , Seroprevalence and attainment of herd immunity against SARS CoV-2: A modelling study.,J Family Med Prim Care,10, H2,4030-35
Mishra BB, Essafi M, Singh R, Gupta S, Parihar SP., Editorial: Repurposed Drugs as Immune-Modulators to Combat Infectious Diseases.,Front Immunol,13, H2,848373
Chopra A, Chavan-Gautam P, Tillu G, Saluja M, Borse S, Sarmukaddam S, Chaudhuri S, Rao B, Yadav B, Srikanth N, Patwardhan B., Randomized, Double Blind, Placebo Controlled, Clinical Trial to Study Ashwagandha Administration in Participants Vaccinated Against COVID-19 on Safety, Immunogenicity, and Protection With COVID-19 Vaccine-A Study Protocol.,Front Med (Lausanne),27, H2,652-663
Bugga P, Alam MJ, Kumar R, Pal S, Chattopadyay N, Banerjee SK. , Sirt3 ameliorates mitochondrial dysfunction and oxidative stress through regulating mitochondrial biogenesis and dynamics in cardiomyoblast.,Cell Signal, H2,110309
Yadav YK, Banerjee SK, Das B, Chaudhary K (2022) Editorial: System biology and Omics approaches for understanding complex disease biology. Front. Genet. doi: 10.3389/fgene.2022.896818
Medigeshi GR, Batra G, Murugesan DR, Thiruvengadam R, Chattopadhyay S, Das B, Gosain M, Ayushi, Singh J, Anbalagan A, Shaman H, Pargai K, Mehdi F, Das SJ, Kahlon N, Singh S, Kshetrapal P, Wadhwa N, Pandey AK, Bhatnagar S, Garg PK. Sub-optimal neutralisation of omicron (B.1.1.529) variant by antibodies induced by vaccine alone or SARS-CoV-2 Infection plus vaccine (hybrid immunity) post 6-months. 10.1016/j.ebiom.2022.103938.
Systemic ablation of vitamin D receptor leads to skeletal muscle glycogen storage disorder in mice, Anamica Das1, Suchitra D. Gopinath2* & Gopalakrishnan Aneeshkumar Arimbasseri1*, Journal of Cachexia, Sarcopenia and Muscle (2021)
Praveenkumar Murugavelu, Reshma Perween, Tripti Shrivastava, Vanshika Singh, Hilal Ahmad Parray, Swarandeep Singh, Adarsh Kumar Chiranjivi, Ramachandran Thiruvengadam, Savita Singh, Naveen Yadav, Kamini Jakhar, Sudipta Sonar, Shailendra Mani, Sankar Bhattacharyya, Chandresh Sharma, Preeti Vishwakarma, Ritika Khatri, Anil Kumar Panchal, Supratik Das, Shubbir Ahmed, Sweety Samal, Pallavi Kshetrapal, Shinjini Bhatnagar, Kalpana Luthra, Rajesh Kumar Non-neutralizing SARS CoV-2 directed polyclonal antibodies demonstrate cross-reactivity with the HA glycans of influenza virus, International Immunopharmacology, Volume 99,2021,108020, https://doi.org/10.1016/j.intimp.2021.108020.
Paul, A., Azhar, S., Das, P, N., Bairagi, N., Chatterjee, S., Elucidating the metabolic characteristics of pancreatic β-cells from patients with type 2 diabetes (T2D) using a genome-scale metabolic modeling. Computers in Biology and Medicine. (vol. 144) 105365, (2022). *corresponding author
Sutar J. Deshpande S. Mullick R. Hingankar N. Patel V. Bhattacharya J. May 2021 Geospatial HIV-1 subtype C gp120 sequence diversity and its predicted impact on broadly neutralizing antibody sensitivity PLOS ONE 10.1371/journal.pone.0251969
Kumar R Deshpande S Sewall LM Ozorowski G Cottrell CA Lee WH Holden LG Richey ST Chandrawacar AS Dhiman K Ashish Kumar V Ahmed S Hingankar N Kumar N Murugavel KG Srikrishnan AK Sok D Ward AB Bhattacharya J. APR 2021 Elicitation of potent serum neutralizing antibody responses in rabbits by immunization with an HIV-1 clade C trimeric Env derived from an Indian elite neutralizer. PLoS Pathog 10.1371/journal.ppat.1008977
Mullick R. Sutar J. Hingankar N. et al. May 2021 Neutralization diversity of HIV-1 Indian subtype C envelopes obtained from cross sectional and followed up individuals against broadly neutralizing monoclonal antibodies having distinct gp120 specificities. Retrovirology 18 10.1186/s12977-021-00556-2
Khan NA Kar M Panwar A Wangchuk J Kumar S Das A Pandey AK Lodha R Medigeshi GR. Apr 2021 Oxidative stress specifically inhibits replication of dengue virus. J Gen Virol 10.1099/jgv.0.001596
Tripti Shrivastava Balwant Singh Zaigham Abbas Rizvi Rohit Verma Sandeep Goswami Preeti Vishwakarma Kamini Jakhar Sudipta Sonar Shailendra Mani Sankar Bhattacharya Amit Awasthi and Milan Surjit April 2021 Comparative immunomodulatory evaluation of the receptor binding domain of SARS-CoV-2 spike protein; a potential vaccine candidate imparts potent humoral and Th1 type immune response in a mouse model Frontiers in Immunology 10.3389/fimmu.2021.641447
Shen, W.J., Asthana, S., Kraemer, F.B., Azhar, S, Scavenger receptor B type 1: expression, molecular regulation, and cholesterol transport function, journal of lipid research, 4.743, 7, 59, 1114-1131, 10.1194/jlr.R083121.
Mehta, O., Ghosh, T.S., Kothidar, A., Gowtham, M.R., Mitra, R., Kshetrapal, P., Wadhwa, N., Ramachandran, T., GARBH-Ini study group, Nair, G.B., Bhatnagar, S., and Das, B. , The vaginal microbiome of pregnant Indian women: Insights into the genome of dominants Lactobacillus species., Microbial Ecology, 3.356, 80, 2, 487-499, 10.1007/s00248-020-01501-0.
Sharma N, Aggarwal S, Kumar S, Sharma R, Choudhury K, Singh N, Jayaswal P, Goel R, Wajid S, Yadav AK, Atmakuri K (2019). Comparative analysis of homologous aminopeptidase PepN from pathogenic and nonpathogenic mycobacteria reveals divergent traits. PLoS ONE 14(4): e0215123. https://doi.org/ 10.1371/journal.pone.0215123
Mohammed, S.A., Parmesha, B., Kumar, Y., Tariq, U., Sudheer, A.K., and Banerjee, S.K, Allylmethylsulfide, a sulfur compound derived from garlic, attenuates isoproterenolinduced cardiac hypertrophy in rats. Oxidative Medicine and Cellular Longevity ,2020
Shukla, R., Shanmugam, R.K., Ramasamy, V., Arora, U., Batra, G., Acklin, J.A., Krammer, F., Lim, J.K., Swaminathan, S., and Khanna, N. Zika virus envelope nanoparticle antibodies protect mice without risk of disease enhancement. EBioMedicine,54
WHO Immediate KMC Study Group, Impact of continuous Kangaroo Mother Care initiated immediately after birth (iKMC) on survival of newborns with birth weight between 1.0 to < 1.8 kg: study protocol for a randomized controlled trial. Trials,21
Mukkamala, R., Kumar, R., Banerjee, S.K., and Aidhen, I.S. Synthesis of Benzyl C analogues of dapagliflozin as potential SGLT2 inhibitors. European Journal of Organic Chemistry, 2020
Kaur, P., Agarwala, A., Makharia, G., Bhatnagar, S., and Tandon, N. Effect of gluten free diet on metabolic control and anthropometric parameters in type 1 diabetes with subclinical celiac disease: a randomized controlled trial. Endocrine Practice,26
Arvind, B., Medigeshi, G.R., Kapil, A., Xess, I., Singh, U., Lodha, R., and Kabra, S.K. Aetiological agents for pulmonary exacerbations in children with cystic fibrosis: An observational study from a tertiary care centre in northern India, Indian Journal of Medical Research,151
Goswami, R., and Awasthi, A. T Cell Differentiation and Function in Tissue Inflammation, Frontiers in Immunology,11
Kumar, P., Mukherjee, A., Randev, S., Medigeshi, G.R., Jat, K.R., Kapil, A., Lodha, R., Kabra, S.K. Effect of acute respiratory infections in infancy on pulmonary function test at 3 years of age: a prospective birth cohort study. BMJ Open Respiratory Research,7
Gupta, B., Sadaria,D., Warrier, V.U., Makandar, A.I., Kant, R., Sethi, G., Pal, J.K., Awasthi, A., Yuba, E., Garg, M., and Gupta, R.K. Plant lectins to prepare the targeted nanovaccines for cancer immunotherapy. Seminars in Cancer Biology,S1044-579
Chandel, V., Srivastava, M., Srivastava, A., Asthana, S., Kumar, D. In-silico interactions of active Phytochemicals with c-MYC EGFR and ERBB2 oncoproteins,Chemical Biology Letters,7
Kuila, B., Sharma, P., Mahajan, D., Singh, P., and Bhargava, G. Rhodium-catalysed chemoand regio-selective [3+ 2+ 2] cycloadditions of bis (methylenecyclopropanes) and alkynes: Synthesis of spirocyclic 5–7 condensed cycloheptenes. Synthetic Communications,50
Gupta, J., Kaul, S., Srivastava, A., Kaushik, N., Ghosh, S., Sharma, C., Batra, G., Banerjee, M., Shalimar, Nayak, B., Ranjith-Kumar, C.T., and Surjit, M. Expression, purification and characterization of the hepatitis E Virus Like-Particles in the Pichia pastoris. Frontiers in Microbiology,11
Singh, M., Srivastava, M., Purushotham, N., Paramesha, B., Wakode, S.R., Poojarey, B., Banerjee, S., and Asthana, S. Molecular dynamics simulation reveals new pocket for the design of novel amino acid coupled Sirt1 selective inhibitor. Biophysical Journal,118
Das, R., Chatterjee, B., Kapil, A., and Sharma, T.K Aptamer-NanoZyme mediated sensing platform for the rapid detection of Escherichia coli in fruit juice, Sensing and Bio-Sensing Research,27
Menon, R., Debnath, C., Lai, A., Guanzon, D., Bhatnagar, S., Kshetrapal, P., Sheller-Miller, S., and Salomon, C. Protein profile changes in circulating placental extracellular vesicles in term and preterm births: A longitudinal study. Endocrinology,161
Arora, G., Gagandeep, Behura, A., Gosain, T.P., Shaliwal, R.P., Kidwai, S., Singh, P., Kandi, S.K., Dhiman, R., Rawat, D.S., and Singh, R. NSC 18725, a pyrazole derivative inhibits growth of intracellular Mycobacterium tuberculosis by induction of autophagy, Frontiers in Microbiology,10
Kumari, S., Katare, P.B., Elancheran, R., Nizami, H.L., Paramesha, B., Arava, S., Sarma, P.P., Kumar, R., Mahajan, D., Kumar, Y., Devi, R., and Banerjee, S.K. Musa balbisiana fruit rich in polyphenols attenuates isoproterenolinduced cardiac hypertrophy in rats via inhibition of inflammation and oxidative stress. Oxidative Medicine and Cellular Longevity,2020
Trivedi, J., Mahajan, D., Jaffe, R.J., Acharya, A., Mitra, D., and Byrareddy, S.N. Recent Advances in the Development of Integrase Inhibitors for HIV Treatment. Current HIV/AIDS Reports,17
Pierson, E., Haufroid, M., Gosian, T.P., Chopra, P., Singh, R., and Wouter, J. Identification and repurposing of trisubstituted harmine derivatives as novel inhibitors of Mycobacterium tuberculosis phosphoserine phosphatase. Molecules,25
Reid, R., Chatterjee, B., Das, S.J., Ghosh, S., and Sharma, T.K. Application of aptamers as molecular recognition elements in lateral flow assays. Analytical Biochemistry ,593
Sadaf, S., Awasthi, D., Singh, A., Nagarkoti, S., Kumar, S., Barthwal, M.K., and Dikshit, M. Pyroptotic and apoptotic cell death in iNOS and nNOS overexpressing K562 cells: a mechanistic insight, Biochemical Pharmacology,176
Pareek, S., Kurakawa, T., Das, B., Motooka, D., Nakaya, S., Rongsen-Chandola, T., Goyal, N., Kayama, H., Dodd, D., Okumura, R., Maeda, Y., Fujimoto, K., Nii, T., Ogawa, T., Iida, T., Bhandari, B., Kida, T., Nakamura, S., Nair, G.B., and Takeda, K. A comparative analysis of intestinal microbiota diversity between Japanese and Indian population shows diet dependent interaction of bacteria and fungi. NPJ Biofilms and Microbiomes,5
Bouzeyen, R., Haoues, M., Barbouche, M.R., Singh, R., Essafi, M. FOXO3 transcription factor regulates il-10 expression in mycobacteria-infected macrophages, tuning their polarization and the subsequent adaptive immune response, Frontiers in Immunology,10
Sohail, A., Abbas, Z.A., Ahuja, V., Awasthi, A., and Srikanth, C.V. DeSUMOylase SENP7 mediated epithelial signalling triggers intestinal inflammation via expansion of Gamma-delta T cell. Cell Reports,29
Sharma, N.C., Efstratiou, A., Guaraldi, A.L.M., Mokrousov, I., Mutreja, A., Das, B., and Ramamurthy, T. Diphtheria. Nature Reviews Disease Primers,5
Sharma, A., Osato, N., Liu, H., Asthana, S., Dakal, T.C., Ambrosini, G., Bucher, P., Schmitt, I., and Wüllner, U. Common genetic variants associated with Parkinson's disease display widespread signature of epigenetic plasticity. Scientific Reports,9
Kamboj, P., Talukdar, N.C., and Banerjee, S.K. Therapeutic benefit of Dillenia indica in diabetes and its associated complications. Journal of Diabetes Research,2019
Dugar, S., Villarreal, F., Hollinger, F.H., Mahajan, D., and Ramirez-Sanchez, I. 11-β-hydroxysterols as possible endogenous stimulators of mitochondrial biogenesis as inferred from epicatechin molecular mimicry, Pharmacological Research,151
Sharma, K.B., Sharma, M., Aggarwal, S., Yadav, A.K., Bhatnagar, S., Vrati, S., and Kalia, M. Quantitative proteome analysis of Atg5-deficient mouse embryonic fibroblasts reveals the range of the autophagy-modulated basal cellular proteome.,mSystems,4
Awasthi, A., and Kumar, H. T cell subtypes and its therapeutic potential in autoimmune diseases and cancer, International Reviews of Immunology,385
Subramanian, L., Maghajothi, S., Singh, M., Kesh, K., Kalyani, A., Sharma, S., Khullar, M., Victor, S.M., Swarnakar, S., Asthana, S., Mullasari, A.S., and Mahapatra, N.R. A Common Tag Nucleotide Variant in MMP7 Promoter Increases Risk for Hypertension via Enhanced Interactions with CREB (Cyclic AMP Response Element-Binding Protein) Transcription Factor. Hypertension,74
Banerjee, S.K., Lata, S., Sharma, A.K., Bagchi, S., Kumar, M., Sahu, S.K., Sarkar, D., Gupta, P., Jana, K., Gupta, U.D., Singh, R., Saha, S., Basu, J., and Kundu, M. The sensor kinase MtrB of Mycobacterium tuberculosis regulates hypoxic survival and establishment of infection,Journal of Biological Chemistry,294
Nagarkoti, S., Dubey, M., Sadaf, S., Awasthi, D., Chandra, T., Jagavelu, K., Kumar, S.,and Dikshit, M. Catalase S-glutathionylation by NOX2 and mitochondrial-derived ROS adversely affects mice and human neutrophil survival. Inflammation,42
Kumar, Y., Kuche, K., Swami, R., Katiyar, S.S., Chaudhari, D., Katare, P.B., Banerjee, S.K., and Jain, S. Exploring the potential of novel pH sensitive lipoplexes for tumor targeted gene delivery with reduced toxicity,International Journal of Pharmaceutics,5
Pal, S., Medatwal, N., Kumar, S., Kar, A.,Komalla, V.,Yavvari, P.S., Mishra, D., Rizvi, Z.A.,Nandan, S., Malakar, D.,Pillai, M.,Awasthi, A.,Das, P.,Sharma, R.D., Srivastava, A., Sengupta, S.,Dasgupta, U., and Bajaj, A. A localized chimeric hydrogel therapy combats tumor progression through alteration of sphingolipid metabolism. ACS Central Science,5
Dhiman, A., Kumar, C., Mishra, S.K., Sikri, K., Haldar, S., Sharma, N., Bansal, A., Ahmad, Y., Kumar, A., Sharma, T.K, and Tyagi, J.S.Theranostic application of a novel G-Quadruplex forming DNA aptamer targeting glyoxylate cycle enzyme malate synthase of Mycobacterium tuberculosis. Molecular Therapy Nucleic Acids, (Cell Press),18
Saxena, S., Chakraborty, A., Kaushal, M., Mohil, R.S., Mishra, A.K., Singh, L.C., Sharma,J., Bansal, A., Agrawal, U., Mehta, J., Asthana, S., Kataki, A.C., Kapur, S., and Bhatnagar, D. Breast Cancer in Indian Women: Genetic Risk Factors and Predictive Biomarkers,Annals of the National Academy of Medical Sciences,55
Kar, M., Khan, N.A., Panwar, A., Bais, S.S., Basak, S., Goel, R., Sopory, S., and Medigeshi, G.R. Zinc chelation specifically inhibits early stages of dengue virus replication by activation of NF-κβ and induction of antiviral response in epithelial cells. Frontiers in Immunology,10
Chatterjee, B., Das S.J., Anand, A., and Sharma, T.K. Nanozymes and aptamer-based biosensing,Materials Science for Energy Technologies,3
Sutar, J., Padwal., V., Sonawani, A., Nagar, V., Patil, P., Kulkarni, B., Hingankar, N., Deshpande, S., Idicula-Thomas, S., Jagtap, J., Bhattacharya, J., Bandivdekar, A., and Patel, V. Effect of diversity in gp41 membrane proximal external region of primary HIV-1 Indian subtype C sequences on interaction with broadly neutralizing antibodies 4E10 and 10E8. Virus Research,273
Senapati, T., Kothidar, A., Banerjee, S., and Das, B. Insights into the gastrointestinal tract microbiomes of Indian population. Journal of Biosciences,44
Kumar, S., and Dikshit, M. Metabolic insight of neutrophils in health and disease. Frontiers in Immunology,10
Das, B., and Nair, G.B. Homeostasis and dysbiosis of the gut microbiome in health and disease,Journal of Biosciences,44
Maurya, S.S., Gosain, T.P., Kidwai, S., Singh, R., and Rawat, D.S. Synthesis of 1,3,4-oxadiazole and imidazo [1,2-1] pyridine based molecular hybrids and their in vitro antituberculosis and cytotoxicity studies. Indian Journal of Chemistry,58B
Kidwai, S., Bouzeyen, R., Chakraborti, S., Khare, N., Das, S., Priya Gosain, T., Behura, A., Meena, C.L., Dhiman, R., Essafi, M., Bajaj, A., Saini, D.K., Srinivasan, N., Mahajan, D., and Singh, R. NU-6027 inhibits growth of Mycobacterium tuberculosis by targeting protein kinase D and protein kinase G. Antimicrobial Agents and Chemotherapy,63
Roy, S., Roy, S., Kar, M., Chakraborty, A., Kumar, A., Delogu, F., Asthana, S., Hande, M.P., and Banerjee, B. Combined treatment with cisplatin and the tankyrase inhibitor XAV-939 increases cytotoxicity, abrogates cancer-stem-like cell phenotype and increases chemosensitivity of head-and-neck squamouscell carcinoma cells. Mutation Research, 846.
Roy, S., and Awasthi, A. Emerging roles of non-coding RNAs in T cell differentiation and functions in autoimmune diseases. International Reviews of Immunology,38
Chandwaskar, R., and Awasthi, A. Emerging roles of Th9 cells as an anti-tumor helper T cells, International Reviews of Immunology,38
Awasthi, D., Nagarkoti, S., Sadaf, S., Chandra, T., Kumar, S., and Dikshit, M. Glycolysis dependent lactate formation in neutrophils: A metabolic link between NOX-dependent and independent NETosis. Biochimica et Biophysica Acta - Molecular Basis of Disease,1865
Kaur, H., Chatterjee, B., Bruno, J.G., and Sharma, T.K. Defining Target Product Profiles (TPPs) for aptamer-based diagnostics. Advances in Biochemical Engineering/Biotechnology,174
Dharra, R., Radhakrishnan, V.S., Prasad, T., Thakur, Z., Cirillo, J., Pandey, A.K., Kulharia, M., and Mehta, P. Evaluation of in silico designed inhibitors targeting MelF (Rv1936) against Mycobacterium marinum within macrophages. Scientific Reports,9
Behura, A., Mishra, A., Chugh, S., Mawatwal, S., Kumar, A., Manna, D., Mishra, A., Singh, R., and Dhiman, R. ESAT-6 modulates Calcimycin-induced autophagy through microRNA-30a in mycobacteria infected macrophages. Journal of Infection,79
Nizami, H.L., Katare, P., Prabhakar, P., Kumar, Y., Arava, S.K., Chakraborty, P., Maulik, S.K., and Banerjee, S.K, Vitamin D deficiency in rats causes cardiac dysfunction by inducing myocardial insulin resistance. Molecular Nutrition & Food Research,63
Shacklett, B.L., Blanco, J., Hightow-Weidman, L., Mgodi, N., Alcamí, J., Buchbinder, S., Chirenje, M., Dabee, S., Diallo, M., Dumchev, K., Herrera, C., Levy, M.E., Martin Gayo, E., Makoah, N.A., Mitchell, K.M., Mugwanya, K., Reddy, K., Rodríguez, M.L., Rodriguez-Garcia, M.Shover, C.L., Shrivastava, T., Tomaras, G., Van Diepen, M., Walia, M., Warren, M., Manrique, A., Thyagarajan, B., and Torri, T. HIV Research for Prevention 2018: From research to impact conference summary and highlights, AIDS Research and Human Retroviruses ,35
Tiwari, P., Gosain, T.P., Singh, M., Sankhe, G.D., Arora, G., Kidwai, S., Agarwal, S., Chugh, S., Saini, D.K., and Singh, R. Inorganic polyphosphate accumulation suppresses the dormancy response and virulence in Mycobacterium tuberculosis. Journal of Biological Chemistry,294
Roy, S., and Awasthi, A. ATP triggers human Th9 cell differentiation via Nitric Oxide-mediated mTOR-HIF1α pathway. Frontiers in Immunology,10
Pathak, P., Kanshana, J.S., Kanuri, B., Rebello, S., Aggarwal, H., and Dikshit, M. Vasoreactivity of isolated aortic rings from dyslipidemic and insulin resistant inducible nitric oxide synthase knockout mice. European Journal of Pharmacology,855
Mishra, S.K., Jain, N., Shankar, U., Tawani, A., Sikri, K., Tyagi, J.S., Sharma, T. K, Margny, J.L., and Kumar, A.Characterization of G-quadruplex motifs in espB, espK and cyp51 genes of Mycobacterium tuberculosis as a potential drug target. Molecular Therapy - Nucleic Acids,16
Birla, S., Vijayakumar, P., Sehgal, S., Bhatnagar, S., Pallavi, K., and Sharma, ACharacterization of a novel POU1F1 mutation identified on screening 160 growth hormone deficiency patients, Hormone and Metabolic Research, 51
Tandon, H., Sharma, A., Wadhwa, S.Varadarajan, R., Singh, R., Srinivasan, N.,and Sandhya, S. Bioinformatic and mutational studies of related toxin-antitoxin pairs in M. tuberculosis predict and identify key functional residues.Journal of Biological Chemistry, 294
Chaterjee P. Nagi N. Agarwal A. Das B. Banerjee S. Sarkar S. Gupta N. Gangakhedkar R. Bhargava B. September 2019 The 2019 novel coronavirus disease COVID-19 pandemic A review of the current evidence. Ind. J. Med. Res DOI10.4103/ijmr.IJMR51920
Amit Kumar Singh Anubhav Tamrakar Ankit Jaiswal Naoki Kanayama Anshu Agarwal Prabhanshu Tripathi Prashant Kodgire 2019 Splicing regulator SRSF1-3 that controls somatic hypermutation of IgV genes interacts with topoisomerase 1 and AID Molecular Immunology 10.1016/j.molimm.2019.10.002
Kumar A Kumar N Sharma R Bhargava G Mahajan D September 2019 Direct Conversion of Carboxylic Acids to Various Nitrogen-Containing Compounds in the One-Pot Exploiting Curtius Rearrangement. J Org Chem 10.1021/acs.joc.9b01697
Ramamurthy T Das B Chakraborty S Mukhopadhyay AK Sack DA. 2019 Aug Diagnostic techniques for rapid detection of Vibrio cholerae Vaccine 10.1016/j.vaccine.2019.07.099
Bhabatosh Das September 2019 Insights into TLC lysogeny A twist in themechanism of IMEX integration NCBI 10.1073/pnas.1912633116
Mittal L Srivastava M Asthana S 2019 Jul Conformational Characterization of Linker Revealed the Mechanism of Cavity Formation by 227G in BVDV RDRP J Phys Chem B. 10.1021/acs.jpcb.9b01859
Ramamurthy T Mutreja A Weill F-X Das B Ghosh A Nair GB. 2019 Jul Revisiting the global epidemiology of cholera in conjuction with the genomics of Vibrio cholera Front. Public Health 10.3389/fpubh.2019.00203
Das B Verma J Kumar P Ghosh A Ramamurthy T. July 2019 Antibiotic resistance in Vibrio cholerae Understanding the ecology of resistance genes and mechanisms Vaccine 10.1016/j.vaccine.2019.06.031
Rajesh Kumar Hilal Ahmed Parray Tripti Shrivastava Subrata Sinha Kalpana Luthra NA Phage display antibody libraries A robust approach for generation of recombinant human monoclonal antibodies International Journal of Biological Macromolecules 10.1016/j.ijbiomac.2019.06.006
Author Suruchi Aggarwal Narayan C. Talukdar Amit K. Yadav NA Advances in Higher Order Multiplexing Techniques in Proteomics J. Proteome Research 10.1021/acs.jproteome.9b00228
Pergu R. Dagar S. Kumar H. Kumar R. Bhattacharya J. and Mylavarapu SVS May 2019 The chaperone ERp29 is required for tunneling nanotube formation by stabilizing M. Sec. J Biol Chem 10.1074/jbc.RA118.005659
Pant A. Das B. Bhadra R.K. January 2019 CTX phage of Vibrio cholerae Genomics and applications. Vaccine 10.1016/j.vaccine.2019.06.034
Das B. and Chattoraj D.K. January 2019 Functionality of Two Origins of Replication in Vibrio cholerae Strains with a Single Chromosome. Front. Microbiol 10.3389/fmicb.2019.01314
Bhatnagar S; Majumder P P; Salunke D M; Interdisciplinary Group for Advanced Research on Birth OutcomesDBT India Initiative GARBH-Ini April 2019 A Pregnancy Cohort to Study Multidimensional Correlates of Preterm Birth in India Study Design Implementation and Baseline Characteristics of the Participants American Journal of Epidemiology 10.1093/aje/kwy284
Samal S; Bansal M; Das S April 2019 Method to identify efficiently cleaved membrane-bound functional HIV-1 Human Immunodeficiency Virus-1 envelopes MethodsX 10.1016/j.mex.2019.04.013
Gupta A; Das P N; Bouzeyen R; Karmakar S P; Singh R; Chatterjee S April 2019 Restoration of cytosolic calcium inhibits Mycobacterium tuberculosis intracellular growth Theoretical evidence and experimental observation Journal of Theoretical Biology 10.1016/j.jtbi.2019.04.017
Ankur Gupta, Ajay Kumar, Rajat Anand, Nandadulal Bairagi, Samrat Chatterjee, Genome scale metabolic model driven strategy to delineate host response to Mycobacterium tuberculosis infection, Molecular Omics, 2.273, ,10.1039/d0mo00138d.
John Protzko, Isaac Z Tanner, Morgan Daly Dedyo, JiaJia Fu, Bhavya Perma, Daniel Ari Friedman, Ada Gabriela Blidner, Juliet Tegan Johnston, Anant Kumar Srivastava, Roland Ruscher, Andreas Kupz, Michael A Tarselli, Felicia Beardsley, Mark Martin Jensen, Nikos Konstantinides, Divyansh Agarwal, Julia Yuen, Suchitra D Gopinath, Michael Tran Duong, Michael Strong, Matúš Soták, Katie Burnette, Samuel Nathan Kirshner, Athanasia Nikolaou, Basant A Ali, Benedito Alves de Oliveira Júnior, Elvira Sojli, Defining events: 2020 in hindsight, Science, 41.845, 371, 6524, 22-24, 10.1126/science.abg0904.
Ranjeet SinghMahl, Akhilesh Kumar, Helena J Tutill, Sreevidhya Tarakkad Krishnaji, Bharathwaj Sathyamoorthy, Mahdad Noursadeghi, Judith Breuer, Amit Kumar Pandey, Himanshu Kumar, NIX-mediated mitophagy regulate metabolic reprogramming in phagocytic cells during mycobacterial infection, Tuberculosis, 2.576, 126, , 102046, https://doi.org/10.1016/j.tube.2020.102046.
Sidhartha Giri, C P Girish Kumar, Shainey Alokit Khakha, Mamta Chawla-Sarkar, Varanasi Gopalkrishna, Shobha D Chitambar, Pratima Ray, S Venkatasubramanian, Biswa Jyoti Borkakoty, Subarna Roy, Jyothi Bhat, Bhagirathi Dwibedi, Pradeep Das, Vijayachari Paluru, Sasirekha Ramani, Sudhir Babji, Rashmi Arora, Sanjay M Mehendale, Mohan D Gupte, Gagandeep Kang, Diversity of rotavirus genotypes circulating in children < 5 years of age hospitalized for acute gastroenteritis in India from 2005 to 2016: analysis of temporal and regional genotype variation, BMC Infectious Diseases, 2.96, 20, 1, 740, 10.1186/s12879-020-05448-y.
Zhang H, Madi A, Yosef N, Chihara N, Awasthi A, Pot C, Lambden C, Srivastava A, Burkett PR, Nyman J, Christian E, Etminan Y, Lee A, Stroh H, Xia J, Karwacz K, Thakore PI, Acharya N, Schnell A, Wang C, Apetoh L, Rozenblatt-Rosen O, Anderson AC, Regev A, Kuchroo VK. An IL-27-driven transcriptional network identifies regulators of IL-10 expression across T helper cell subsets. Cell Rep. 2020 Nov 24;33(8):108433. doi: 10.1016/j.celrep.2020.108433.
Vishwakarma P, Yadav N, Rizvi ZA, Khan NA, Chiranjivi AK, Mani S, Bansal M, Dwivedi P, Shrivastava T, Kumar R, Awasthi A, Ahmed S, Samal S. Severe acute respiratory syndrome Coronavirus 2 spike protein based novel epitopes induce potent immune responses in vivo and Inhibit Viral Replication in vitro. Front Immunol. 2021 Mar 26;12:613045. doi: 10.3389/fimmu.2021.613045.
Vishwakarma P, Khatri R, Siddiqui G, Yadav N, Rizvi ZA, Awasthi A, Samal S. Preclinical animal models for COVID-19 research-Making a wise choice. ARC Journal of Immunology and Vaccines. 2020; 5(1): 24-37.
Verma R, Saha S, Kumar S, Mani S, Maiti TK, Surjit M. RNA-protein interaction analysis of SARS-CoV-2 5’- and 3’-untranslated regions identifies an antiviral role of lysosome-associated membrane protein-2. bioRxiv (2021): 2021-01.
Tyagi R, Srivastava M, Jain P, Pandey RP, Asthana S, Kumar D, Raj VS. Development of potential proteasome inhibitors against Mycobacterium tuberculosis. J Biomol Struct Dyn. 2020 Oct 19:1-15. doi: 10.1080/07391102.2020.1835722.
Tyagi R, Srivastava M, Singh B, Sharma S, Pandey RP, Asthana S, Kumar D, Raj VS. Identification and validation of potent Mycobacterial proteasome inhibitor from Enamine library. J Biomol Struct Dyn. 2021 May 6:1-11. doi: 10.1080/07391102.2021.1914173.
Trivedi J, Mahajan D, Jaffe RJ, Acharya A, Mitra D, Byrareddy SN. Recent advances in the development of integrase inhibitors for HIV treatment. Curr HIV/AIDS Rep. 2020 Feb;17(1):63-75. doi: 10.1007/s11904-019-00480-3.
Thakur SK, Goswami K, Rao P, Kaushik S, Singh BP, Kain P, Asthana S, Bhattacharjee S, Guchhait P, Eswaran SV. Fluoresceinated Aminohexanol tethered Inositol Hexakisphosphate: Studies on Arabidopsis thaliana and Drosophila melanogaster and docking with 2P1M receptor. ACS Omega. 2020 Apr 13;5(16):9585-9597. doi: 10.1021/acsomega.0c00961.
Taneja V, Goel M, Shankar U, Kumar A, Khilnani GC, Prasad HK, Prasad GBKS, Gupta UD, Sharma TK. An aptamer linked immobilized sorbent assay (ALISA) to detect circulatory IFN-α, an inflammatory protein among tuberculosis patients. ACS Comb Sci. 2020 Nov 9;22(11):656-666. doi: 10.1021/acscombsci.0c00108.
Tandon R, Soni A, Singh RK, Sodhi R, Seth MK, Sinha S, Sahdev S, Dhage G, Das B, Dastidar SG, Shriumalla RK, Yonesu K, Marumoto S, Nagayama T. Identification of novel Urotensin-II receptor antagonists with potent inhibition of U-II induced pressor response in mice. Eur J Pharmacol. 2020 Nov 5;886:173391. doi: 10.1016/j.ejphar.2020.173391.
Singhal C, Bruno JG, Kaushal A, Sharma, TK. Recent advances and a roadmap to aptamer-based sensors for bloodstream infections. ACS Appl. Bio Mater. 2021, 4, 5, 3962–3984. doi: https://dx.doi.org/10.1021/acsabm.0c01358.
Singh P, Khurana H, Yadav SP, Dhiman K, Singh P, Ashish, Singh R, Sharma D. Biochemical characterization of ClpB protein from Mycobacterium tuberculosis and identification of its small-molecule inhibitors. Int J Biol Macromol. 2020 Dec 15;165(Pt A):375-387. doi: 10.1016/j.ijbiomac.2020.09.131.
Singh M, Srivastava M, Wakode SR, Asthana S. Elucidation of structural determinants delineates the residues playing key roles in differential dynamics and selective inhibition of Sirt1-3. J Chem Inf Model. 2021 Mar 22;61(3):1105-1124. doi: 10.1021/acs.jcim.0c01193.
Singh M, Schiavone N, Papucci L, Maan P, Kaur J, Singh G, Nandi U, Nosi D, Tani A, Khuller GK, Priya M, Singh R, Kaur IP. Streptomycin sulphate loaded solid lipid nanoparticles show enhanced uptake in macrophage, lower MIC in Mycobacterium and improved oral bioavailability. Eur J Pharm Biopharm. 2021 Mar;160:100-124. doi: 10.1016/j.ejpb.2021.01.009.
Shukla R, Beesetti H, Brown JA, Ahuja R, Ramasamy V, Shanmugam RK, Poddar A, Batra G, Krammer F, Lim JK, Kale S, Lal AA, Swaminathan S, Khanna N. Dengue and Zika virus infections are enhanced by live attenuated dengue vaccine but not by recombinant DSV4 vaccine candidate in mouse models. EBioMedicine. 2020 Oct;60:102991. doi: 10.1016/j.ebiom.2020.102991.
Sehrawat S, Khasa R, Deb A, Prajapat SK, Mallick S, Basu A, Surjit M, Kalia M, Vrati S. Valosin-containing protein/p97 plays critical roles in the Japanese encephalitis virus life cycle. J Virol. 2021 Mar 17;95(11):e02336-20. doi: 10.1128/JVI.02336-20.
Sharma A, Sanduja P, Anand A, Mahajan P, Guzman CA, Yadav P, Awasthi A, Hanski E, Dua M, Johri AK. Advanced strategies for development of vaccines against human bacterial pathogens. World J Microbiol Biotechnol. 2021 Mar 22;37(4):67. doi: 10.1007/s11274-021-03021-6.
Sharma A, Chattopadhyay G, Chopra P, Bhasin M, Thakur C, Agarwal S, Ahmed S, Chandra N, Varadarajan R, Singh R. VapC21 toxin contributes to drug-tolerance and interacts with non-cognate VapB32 antitoxin in Mycobacterium tuberculosis. Front Microbiol. 2020 Sep 11;11:2037. doi: 10.3389/fmicb.2020.02037.
Shankar U, Jain N, Mishra SK, Sharma TK, Kumar A. Conserved G-quadruplex motifs in gene promoter region reveals a novel therapeutic approach to target multi-drug resistance Klebsiella pneumoniae. Front Microbiol. 2020 Jun 26;11:1269. doi: 10.3389/fmicb.2020.01269.
Sarkar R, Sharma KB, Kumari A, Asthana S, Kalia M. Japanese encephalitis virus capsid protein interacts with non-lipidated MAP1LC3 on replication membranes and lipid droplets. J Gen Virol. 2021 Jan;102(1). doi: 10.1099/jgv.0.001508.
Sankhyan A, Sharma T, Kaur T, Khan Z, Bhatnagar S, Tiwari A, Sharma C. Heterologous expression of Salmonella typhi - Cytolethal distending toxin subunit B in E. coli and comparative viable bioactivity characterization. J Appl. Biochem. Lab. Med. 2020; 01:28-33
Salminen T, Mehdi F, Rohila D, Kumar M, Talha SM, Prakash JAJ, Khanna N, Pettersson K, Batra G. Ultrasensitive and robust Point-of-Care immunoassay for the detection of Plasmodium falciparum malaria. Anal Chem. 2020 Dec 15;92(24):15766-15772. doi: 10.1021/acs.analchem.0c02748.
Sadhu S, Rizvi ZA, Pandey RP, Dalal R, Rathore DK, Kumar B, Pandey M, Kumar Y, Goel R, Maiti TK, Johri AK, Tiwari A, Pandey AK, Awasthi A. Gefitinib results in robust host-directed immunity against Salmonella infection through proteo-metabolomic reprogramming. Front Immunol. 2021 Mar 31;12:648710. doi: 10.3389/fimmu.2021.648710.
Sadaf S, Nagarkoti S, Awasthi D, Singh AK, Srivastava RN, Kumar S, Barthwal MK, Dikshit M. nNOS induction and NOSIP interaction impact granulopoiesis and neutrophil differentiation by modulating nitric oxide generation. Biochim Biophys Acta Mol Cell Res. 2021 Jun;1868(7):119018. doi: 10.1016/j.bbamcr.2021.119018.
Roy S, Goel R, Aggarwal S, Asthana S, Yadav AK, Awasthi A. Proteome analysis revealed the essential functions of protein phosphatase PP2A in the induction of Th9 cells. Sci Rep. 2020 Jul 3;10(1):10992. doi: 10.1038/s41598-020-67845-2.
Rizvi ZA, Dalal R, Sadhu S, Kumar Y, Srivastava T, Gupta SK, Agarwal S, Tripathy MR, Yadav AK, Medigeshi GR, Pandey AK, Samal S, Asthana S, Awasthi A. Immunological and cardio-vascular pathologies associated with SARS-CoV-2 infection in golden Syrian hamster. bioRxiv (2021). doi: https://doi.org/10.1101/2021.01.11.426080
Reid R, Chatterjee B, Das SJ, Ghosh S, Sharma TK. Application of aptamers as molecular recognition elements in lateral flow assays. Anal Biochem. 2020 Mar 15;593:113574. doi: 10.1016/j.ab.2020.113574.
Raj S, Chandel V, Kumar A, Kesari KK, Asthana S, Ruokolainen J, Kamal MA, Kumar D. Molecular mechanisms of interplay between autophagy and metabolism in cancer. Life Sci. 2020 Oct 15;259:118184. doi: 10.1016/j.lfs.2020.118184.
Prakash C, Pandey M, Talwar S, Singh Y, Kanojiya S, Pandey AK, Kumar N. Extra-ribosomal functions of Mtb RpsB in imparting stress resilience and drug tolerance to mycobacteria. Biochimie. 2020 Oct;177:87-97. doi: 10.1016/j.biochi.2020.08.007.
Perween R, Ahmed S, Shrivastava T, Parray HA, Singh B, Pindari KS, Sharma C, Shukla S, Sinha S, Panchal AK, Kumar R. A rapid novel strategy for screening of antibody phage libraries for production, purification, and functional characterization of amber stop codons containing single-chain antibody fragments. Biotechnol Prog. 2021 Feb 23:e3136. doi: 10.1002/btpr.3136.
Paul, A., Chatterjee, S., & Bairagi, N. Prediction on COVID-19 epidemic for different countries: Focusing on South Asia under various precautionary measures. medRxiv. (2020). doi: https://doi.org/10.1101/2020.04.08.20055095
Paul A, Anand R, Karmakar SP, Rawat S, Bairagi N, Chatterjee S. Exploring gene knockout strategies to identify potential drug targets using genome-scale metabolic models. Sci Rep. 2021 Jan 8;11(1):213. doi: 10.1038/s41598-020-80561-1.
Parray HA, Chiranjivi AK, Asthana S, Yadav N, Shrivastava T, Mani S, Sharma C, Vishwakarma P, Das S, Pindari K, Sinha S, Samal S, Ahmed S, Kumar R. Identification of an anti-SARS-CoV-2 receptor-binding domain-directed human monoclonal antibody from a naïve semisynthetic library. J Biol Chem. 2020 Sep 4;295(36):12814-12821. doi: 10.1074/jbc.AC120.014918.
Meena CL, Singh P, Shaliwal RP, Kumar V, Kumar A, Tiwari AK, Asthana S, Singh R, Mahajan D. Synthesis and evaluation of thiophene based small molecules as potent inhibitors of Mycobacterium tuberculosis. Eur J Med Chem. 2020 Dec 15;208:112772. doi: 10.1016/j.ejmech.2020.112772.
Mishra A, Behura A, Kumar A, Ghosh A, Naik L, Mawatwal S, Mohanty SS, Mishra A, Saha S, Bhutia SK, Singh R, Dhiman R. Soybean lectin induces autophagy through P2RX7 dependent activation of NF-κB-ROS pathway to kill intracellular mycobacteria. Biochim Biophys Acta Gen Subj. 2021 Feb;1865(2):129806. doi: 10.1016/j.bbagen.2020.129806.
Mittal L, Kumari A, Suri C, Bhattacharya S, Asthana S. Insights into structural dynamics of allosteric binding sites in HCV RNA-dependent RNA polymerase. J Biomol Struct Dyn. 2020 Apr;38(6):1612-1625. doi: 10.1080/07391102.2019.1614480.
Mittal A, Gupta A, Kumar S, Surjit M, Singh B, Soneja M, Soni KD, Khan AR, Singh K, Naik S, Kumar A, Aggarwal R, Nischal N, Sinha S, Trikha A, Wig N. Gargle lavage as a viable alternative to swab for detection of SARS-CoV-2. Indian J Med Res. 2020 Jul & Aug;152(1 & 2):77-81. doi: 10.4103/ijmr.IJMR_2987_20.
Mehdi F, Chattopadhyay S, Thiruvengadam R, Yadav S, Kumar M, Sinha SK, Goswami S, Kshetrapal P, Wadhwa N, Chandramouli Natchu U, Sopory S, Koundinya Desiraju B, Pandey AK, Das A, Verma N, Sharma N, Sharma P, Bhartia V, Gosain M, Lodha R, Lamminmäki U, Shrivastava T, Bhatnagar S, Batra G. Development of a fast SARS-CoV-2 IgG ELISA, based on receptor-binding domain, and its comparative evaluation using temporally segregated samples from RT-PCR positive individuals. Front Microbiol. 2021 Jan 20;11:618097. doi: 10.3389/fmicb.2020.618097.
Martiskainen I, Talha SM, Vuorenpää K, Salminen T, Juntunen E, Chattopadhyay S, Kumar D, Vuorinen T, Pettersson K, Khanna N, Batra G. Upconverting nanoparticle reporter-based highly sensitive rapid lateral flow immunoassay for hepatitis B virus surface antigen. Anal Bioanal Chem. 2021 Feb;413(4):967-978. doi: 10.1007/s00216-020-03055-z.
Martiskainen I, Juntunen E, Salminen T, Vuorenpää K, Bayoumy S, Vuorinen T, Khanna N, Pettersson K, Batra G, Talha SM. Double-antigen lateral flow immunoassay for the detection of anti-HIV-1 and -2 antibodies using upconverting nanoparticle reporters. Sensors (Basel). 2021 Jan 6;21(2):330. doi: 10.3390/s21020330.
Majumdar S, Verma R, Saha A, Bhattacharyya P, Maji P, Surjit M, Kundu M, Basu J, Saha S. Perspectives about modulating host immune system in targeting SARS-CoV-2 in India. Front Genet. 2021 Feb 16;12:637362. doi: 10.3389/fgene.2021.637362.
Malladi SK, Singh R, Pandey S, Gayathri S, Kanjo K, Ahmed S, Khan MS, Kalita P, Girish N, Upadhyaya A, Reddy P, Pramanick I, Bhasin M, Mani S, Bhattacharyya S, Joseph J, Thankamani K, Raj VS, Dutta S, Singh R, Nadig G, Varadarajan R. Design of a highly thermotolerant, immunogenic SARS-CoV-2 spike fragment. J Biol Chem. 2020 Nov 5;296:100025. doi: 10.1074/jbc.RA120.016284.
Mahla RS, Kumar A, Tutil H, Krishnaji ST, Sathyamoorthy B, Noursadeghi M, Breuer J, Pandey AK, Kumar H. Essential role of NIX in metabolic reprogramming for macrophage plasticity during mycobacterial species infection. Tuberculosis (2021), Vol 126, https://doi.org/10.1016/j.tube.2020.102046.
Maddipati VC, Mittal L, Mantipally M, Asthana S, Bhattacharyya S, Gundla R. A review on the progress and prospects of Dengue drug discovery targeting NS5 RNA- Dependent RNA Polymerase. Curr Pharm Des. 2020;26(35):4386-4409. doi: 10.2174/1381612826666200523174753.
Lunge A, Gupta R, Choudhary E, Agarwal N. The unfoldase ClpC1 of Mycobacterium tuberculosis regulates the expression of a distinct subset of proteins having intrinsically disordered termini. J Biol Chem. 2020 Jul 10;295(28):9455-9473. doi: 10.1074/jbc.RA120.013456.
Kumari S, Katare PB, Elancheran R, Nizami HL, Paramesha B, Arava S, Sarma PP, Kumar R, Mahajan D, Kumar Y, Devi R, Banerjee SK. Musa balbisiana fruit rich in polyphenols attenuates isoproterenol-induced cardiac hypertrophy in rats via inhibition of inflammation and oxidative stress. Oxid Med Cell Longev. 2020 Jan 27;2020:7147498. doi: 10.1155/2020/7147498.
Kumari A, Mittal L, Srivastava M, Asthana S. Binding mode characterization of 13b in the monomeric and dimeric states of SARS-CoV-2 main protease using molecular dynamics simulations. J Biomol Struct Dyn. 2021 May 24:1-19. doi: 10.1080/07391102.2021.1927844.
Kumari A, Pal Pathak D, Asthana S. Bile acids mediated potential functional interaction between FXR and FATP5 in the regulation of Lipid Metabolism. Int J Biol Sci. 2020 Jun 14;16(13):2308-2322. doi: 10.7150/ijbs.44774.
Kumar R, Shrivastava T, Samal S, Ahmed S, Parray HA. Antibody-based therapeutic interventions: possible strategy to counter chikungunya viral infection. Appl Microbiol Biotechnol. 2020 Apr;104(8):3209-3228. doi: 10.1007/s00253-020-10437-x.
Kumar P, Mukherjee A, Randev S, Medigeshi GR, Jat KR, Kapil A, Lodha R, Kabra SK. Epidemiology of coronavirus infection in children and their impact on lung health: Finding from a birth cohort study. Pediatr Infect Dis J. 2020 Dec;39(12):e452-e454. doi: 10.1097/INF.0000000000002884.
Kumar B, Dey AK, Saha S, Singh AK, Kshetrapal P, Wadhwa N, Thiruvengadam R, Desiraju BK, Bhatnagar S, Salunke DM, Rashid F, Malakar D, Maiti TK; GARBH-Ini Study Group. Dynamic alteration in the vaginal secretory proteome across the early and mid-trimesters of pregnancy. J Proteome Res. 2021 Feb 5;20(2):1190-1205. doi: 10.1021/acs.jproteome.0c00433.
Kumar A, Singh R, Kaur J, Pandey S, Sharma V, Thakur L, Sati S, Mani S, Asthana S, Sharma TK, Chaudhuri S, Bhattacharyya S, Kumar N. Wuhan to world: The COVID-19 pandemic. Front Cell Infect Microbiol. 2021 Mar 30;11:596201. doi: 10.3389/fcimb.2021.596201.
Kumar A, Midha MK, Rao KV. THP1 proteomics in response to mycobacterium tuberculosis infection. Data Brief. 2021 Jan 30;35:106803. doi: 10.1016/j.dib.2021.106803.
Kumar A, Kumar Y, Sevak JK, Kumar S, Kumar N, Gopinath SD. Metabolomic analysis of primary human skeletal muscle cells during myogenic progression. Sci Rep. 2020 Jul 16;10(1):11824. doi: 10.1038/s41598-020-68796-4.
Kumar A, Das B., Kumar N. Vibrio Pathogenicity Island-1: The master determinant of cholera pathogenesis. Front Cell Infect Microbiol. 2020 Oct 6;10:561296. doi: 10.3389/fcimb.2020.561296.
Kuila B, Sharma P, Mahajan D, Singh P, Bhargava G. Rhodium-catalysed chemo-and regio-selective [3+ 2+ 2] cycloadditions of bis (methylenecyclopropanes) and alkynes: Synthesis of spirocyclic 5–7 condensed cycloheptenes. Synthetic Communication. 2020, 50 (6), 840. doi: https://doi.org/10.1080/00397911.2020.1720738
Khan ZA, Mondal G, Sharma C, Falak S, Ansari A, Chattoraj A. Role of melatonin in preterm birth. Chronobiol Med. 2020;2(4):148-154. doi: https://doi.org/10.33069/cim.2020.0024
Khan ZA, Falak S, Raghav A, Sharma C, Chattoraj A. Risk of COVID-19 among the LGBTQ population. KJPH. 2020; 57(1):20-23
Khan Z, Kaur T, Sharma C. Expression and purification of Histidine-tagged Salmonella typhi Cell invasion protein (SipC) and its diagnostic utility. J Appl. Biochem. Lab. Med. 2020; 01:21-27.
Kedia S, Ghosh TS, Jain S, Desigamani A, Kumar A, Gupta V, Bopanna S, Yadav DP, Goyal S, Makharia G, Travis SPL, Das B, Ahuja V. Gut microbiome diversity in acute severe colitis is distinct from mild to moderate ulcerative colitis. J Gastroenterol Hepatol. 2021 Mar;36(3):731-739. doi: 10.1111/jgh.15232.
Kaushik N, Lamminmäki U, Khanna N, Batra G. Enhanced cell density cultivation and rapid expression-screening of recombinant Pichia pastoris clones in microscale. Sci Rep. 2020 May 4;10(1):7458. doi: 10.1038/s41598-020-63995-5.
Kaur T, Kapila S, Kapila R, Kumar S, Upadhyay D, Kaur M, Sharma C. Tmprss2 specific miRNAs as promising regulators for SARS-CoV-2 entry checkpoint. Virus Res. 2021 Mar;294:198275. doi: 10.1016/j.virusres.2020.198275.
Kaur T, John AA, Sharma C, Vashisht NK, Singh D, Kapila R, Kapila S. miR300 intervenes Smad3/β-catenin/RunX2 crosstalk for therapy with an alternate function as indicative biomarker in osteoporosis. Bone. 2021 Feb;143:115603. doi: 10.1016/j.bone.2020.115603.
Jain N, Mishra SK, Shankar U, Jaiswal A, Sharma TK, Kodgire P, Kumar A. G-quadruplex stabilization in the ions and maltose transporters gene inhibit Salmonella enterica growth and virulence. Genomics. 2020 Nov;112(6):4863-4874. doi: 10.1016/j.ygeno.2020.09.010.
Jadhav PV, Sinha VK, Chugh S, Kotyada C, Bachhav D, Singh R, Rothweiler U, Singh M. 2.09 A resolution structure of E. coli HigBA toxin-antitoxin complex reveals an ordered DNA-binding domain and intrinsic dynamics in antitoxin. Biochem J. 2020 Oct 30;477(20):4001-4019. doi: 10.1042/BCJ20200363.
Hingankar N, Mullick R, Sutar J, Deshpande S, Morris L, Sok D, Bhattacharya J. Variation in neutralization susceptibility of HIV-1 Indian Subtype C to potent and broadly neutralizing monoclonal antibodies (bnAbs) having distinct epitope specificities. Journal of the International AIDS Society. 2021. https://onlinelibrary.wiley.com/doi/epdf/10.1002/jia2.25659. Proceedings of the 4th HIV Research for Prevention Conference (HIVR4P)
Hingane S, Joshi N, Surjit M, Ranjith-Kumar CT. Hepatitis E virus ORF2 inhibits RIG-I mediated interferon response. Front Microbiol. 2020 Apr 15;11:656. doi: 10.3389/fmicb.2020.00656.
Harrison SP, Siller R, Tanaka Y, Xiang Y, Patterson B, Kempf H, Melum E, Åsrud KS, Chollet ME, Andersen E, Sandset PM, Baumgarten S, Bonanini F, Kurek D, Mathapati S, Almaas R, Sharma K, Wilson SR, Skottvoll FS, Boger IC, Bogen IL, Nyman TA, Wu JJ, Bezrouk A, Cizkova D, Mokry J, Zweigerdt R, Park I, Sullivan GJ. Scalable production of tissue-like vascularised liver organoids from human PSCs. bioRxiv; 2020. doi: 10.1101/2020.12.02.406835.
Gupta V, Mehta P, Kumar A, Chaudhary M, Diyundi SC, Sehajpal PK, Thangaraj K, Singh R. c.29C>T polymorphism in the TGF-β1 gene correlates with increased risk of End Stage Renal Disease: original study and meta-analysis. Meta Gene (2020), Vol. 25: 100703. doi: https://doi.org/10.1016/j.mgene.2020.100703
Ghose A, Bhattacharya S, Karthikeyan AS, Kudale AM, Monteiro JM, Joshi A, Medigeshi GR, Kang G, Bal V, Rath S, Shashidhara LS, John J, Chaudhuri S, Nagarkar A. Community prevalence of antibodies to SARS-CoV-2 and correlates of protective immunity in five localities in an Indian metropolitan city. medRxiv 2020 Pages 2020.11.17.20228155. doi: 10.1101/2020.11.17.20228155.
Dey AK, Kumar B, Singh AK, Ranjan P, Thiruvengadam R, Desiraju BK, Kshetrapal P, Wadhwa N, Bhatnagar S, Rashid F, Malakar D, Salunke DM, Maiti TK; GARBH-Ini Study Group*. Salivary proteome signatures in the early and middle stages of human pregnancy with term birth outcome. Sci Rep. 2020 May 15;10(1):8022. doi: 10.1038/s41598-020-64483-6.
Devi TB, Devadas K, George M, Gandhimathi A, Chouhan D, Retnakumar RJ, Alexander SM, Varghese J, Dharmaseelan S, Chandrika SK, Jissa VT, Das B, Nair GB, Chattopadhyay S. Low Bifidobacterium abundance in the lower gut microbiota is associated with Helicobacter pylori-related gastric ulcer and gastric cancer. Front Microbiol. 2021 Feb 26;12:631140. doi: 10.3389/fmicb.2021.631140.
Deshpande S, Mullick R, Sutar J, Patil S, Murugavel KG, Srikrishnan AK, Goyal R, Bhattacharya J. Subtle variations in HIV-1 subtype C env sequence features obtained from a slow progressing Indian donor and their association with sensitivity to neutralizing antibodies with distinct epitope specificities. Journal of the International AIDS Society. 2021. https://onlinelibrary.wiley.com/doi/epdf/10.1002/jia2.25659. Proceedings of the 4th HIV Research for Prevention Conference (HIVR4P).
Das S, Kumar R, Ahmed S, Parray HA, Samal S. Efficiently cleaved HIV-1 envelopes: can they be important for vaccine immunogen development? Ther Adv Vaccines Immunother. 2020 Oct 8;8:2515135520957763. doi: 10.1177/2515135520957763.
Das S. Taking a re-look at cap-binding signatures of the mRNA cap-binding protein eIF4E orthologues in trypanosomatids. Mol Cell Biochem. 2021 Feb;476(2):1037-1049. doi: 10.1007/s11010-020-03970-w.
Das PN, Kumar A, Bairagi N, Chatterjee S. Effect of delay in transportation of extracellular glucose into cardiomyocytes under diabetic condition: a study through mathematical model. J Biol Phys. 2020 Sep;46(3):253-281. doi: 10.1007/s10867-020-09551-8.
Choudhary E, Bullen CK, Goel R, Singh AK, Praharaj M, Thakur P, Dhiman R, Bishai WR, Agarwal N. Relative and quantitative phosphoproteome analysis of macrophages in response to infection by virulent and avirulent Mycobacteria reveals a distinct role of the cytosolic RNA sensor RIG-I in Mycobacterium tuberculosis pathogenesis. J Proteome Res. 2020 Jun 5;19(6):2316-2336. doi: 10.1021/acs.jproteome.9b00895.
Chaudhuri S, Thiruvengadam R, Chattopadhyay S, Mehdi F, Kshetrapal P, Shrivastava T, Desiraju BK, Batra G, Kang G, Bhatnagar S; DBT India consortium for COVID-19 research. Comparative evaluation of SARS-CoV-2 IgG assays in India. J Clin Virol. 2020 Oct;131:104609. doi: 10.1016/j.jcv.2020.104609
Chaudhary D, Marzuki M, Lee A, Bouzeyen R, Singh A, Gosain TP, Kidwai S, Grady C, Tsotetsi K, Chawla K, Shihui F, Lum J, Gupta SK, Agarwal N, Tsenova L, Kumar Y, Lee B, Kumar P, Thakur KG, Singh R, Singhal A. Disulfiram inhibits M. tuberculosis growth by altering methionine pool, redox status and host-immune response. bioRxiv 2020.09.01.277368; doi: https://doi.org/10.1101/2020.09.01.277368
Chatterjee B, Kalyani N, Anand A, Khan E, Das S, Bansal V, Kumar A, Sharma TK. GOLD SELEX: a novel SELEX approach for the development of high-affinity aptamers against small molecules without residual activity. Mikrochim Acta. 2020 Oct 19;187(11):618. doi: 10.1007/s00604-020-04577-0.
Chandel V, Srivastava M, Srivastava A, Asthana S, Kumar D. In-silico interactions of active phytochemicals with c-MYC EGFR and ERBB2 oncoproteins. Chem. Biol. Letters 2020; 7 (1), 47-54.
Bosch I, Reddy A, de Puig H, Ludert JE, Perdomo-Celis F, Narváez CF, Versiani A, Fandos D, Nogueira ML, Singla M, Lodha R, Medigeshi GR, Lorenzana I, Ralde HV, Gélvez-Ramírez M, Villar LA, Hiley M, Mendoza L, Salcedo N, Herrera BB, Gehrke L. Serotype-specific detection of dengue viruses in a nonstructural protein 1-based enzyme-linked immunosorbent assay validated with a multi-national cohort. PLoS Negl Trop Dis. 2020 Jun 24;14(6):e0008203. doi: 10.1371/journal.pntd.0008203.
Borkar RM, Gajji S, Mohammed SA, Srivastava M, Reddy VG, Jala A, Asthana S, Kamal A, Banerjee SK, Ragampeta S. Identification and characterization of in vitro and in vivo fidarestat metabolites: Toxicity and efficacy evaluation of metabolites. J Mass Spectrom. 2021 Feb;56(2):e4694. doi: 10.1002/jms.4694.
Bhattacharya J, Chandrawacar AS, Dhiman K, Ozorowski G, Sewall LM, Cottrell CA, Hingankar N, Kumar R, Deshpande S, Murugavel KG, Srikrishnan AK, Ashish, Ward AB. Structural features of a novel HIV-1 Indian clade C trimeric soluble Env SOSIP and the polyclonal neutralizing antibody responses developed in vaccinated rabbits. Journal of the International AIDS Society. 2021. https://onlinelibrary.wiley.com/doi/epdf/10.1002/jia2.25659. Proceedings of the 4th HIV Research for Prevention Conference (HIVR4P).
Anantharaj A, Gujjar S, Kumar S, Verma N, Wangchuk J, Khan NA, Panwar A, Kanakan A, Vasudevan AV, Das JS, Pandey A, Pandey AK, Pandey R, Medigeshi GR. Kinetics of viral load, immunological mediators and characterization of a SARS-CoV-2 isolate in mild COVID-19 patients during acute phase of infection. medRxiv 2020.11.05.20226621. doi: 10.1101/2020.11.05.20226621.
Anantharaj A, Das SJ, Sharanabasava P, Lodha R, Kabra SK, Sharma TK, Medigeshi GR. Visual detection of SARS-CoV-2 RNA by conventional PCR-induced generation of DNAzyme sensor. Front Mol Biosci. 2020 Dec 23;7:586254. doi: 10.3389/fmolb.2020.586254.
Ahmed S, Shrivastava T, Kumar R, Kumar M, Banerjee M, Kumar N, Bansal M, Das S, Samal S. Design and characterization of a germ-line targeting soluble, native-like, trimeric HIV-1 Env lacking key glycans from the V1V2-loop. Biochim Biophys Acta Gen Subj. 2021 Jan;1865(1):129733. doi: 10.1016/j.bbagen.2020.129733.
Aggarwal H, Pathak P, Singh P, Gayen JR, Jagavelu K, Dikshit M. Systemic insulin resistance and metabolic perturbations in chow fed inducible Nitric Oxide Synthase knockout male mice: Partial reversal by nitrite supplementation. Antioxidants (Basel). 2020 Aug 12;9(8):736. doi: 10.3390/antiox9080736.
Agarwal S, Sharma A, Bouzeyen R, Deep A, Sharma H, Mangalaparthi KK, Datta KK, Kidwai S, Gowda H, Varadarajan R, Sharma RD, Thakur KG, Singh R. VapBC22 toxin-antitoxin system from Mycobacterium tuberculosis is required for pathogenesis and modulation of host immune response. Sci Adv. 2020 Jun 3;6(23):eaba6944. doi: 10.1126/sciadv.aba6944.
Agarwal N. Construction of a novel CRISPRi-based tool for silencing of multiple genes in Mycobacterium tuberculosis. Plasmid. 2020 Jul;110:102515. doi: 10.1016/j.plasmid.2020.102515.
Alvarez-Silva C. Kashani A. Hansen T.H. Pinna N.K. Anjana R.M. Dutta A. Saxena S. Stoy J. Kampmann U. Nielsen T. Jorgensen T. Gnanaprakash V. Gnanavadivel R. Sukumaran A. Rani C.S.S. Frch K. Radha V. Balasubramanyam M. Nair G.B. Das B. Vestergaard H. Hansen T. Mande S.S. Mohan V. Arumugam M. Pedersen O Jan 2020 Transethnic gut microbiota signatures of type 2 diabetes in Denmark and India Genome Medicine 10.1186/s13073-021-00856-4
Will R.C. Ramamurthy T. Sharma N.C. Balaji V. Pragasam A. Vasudevan K. Kumar D. Das D. Heinz E. Melnikov V. Sangal V. Dougan G. Mutreja A Jan 2020 Spatiotemporal persistence of multiple diverse clones and toxins of Corynebacterium diphtheria. Nature communication Nature communication 10.1038/s41467-021-21870-5
Pinna N.K. Anjana R. M. Saxena S. Dutta A. Gnanaprakash V. Gnanavadivel R. Sukumaran A. Raghavan S. Subramanian C. Rani S. Radha V. Balasubramanyam M. Pant A. Nielsen T. Jorgensen T. Frch K. Kashani A. Camila M. Silva A. Vestergaard H. Haldor T.H. Hansen T. Arumugam T. Nair G.B. Das B. Pedersen O. Mohan V. Mande S. Jan 2020 Trans-ethnic gut microbial signatures of prediabetic subjects from India and Denmark Genome Medicine 10.1186/s13073-021-00851-9
Rampal R Wari N Singh AK Das U Bopanna S Gupta V Nayak B Velapandian T Kedia S Kumar D Awasthi A Ahuja V. March 2021 Retinoic Acid Is Elevated in the Mucosa of Patients With Active Ulcerative Colitis and Displays a Proinflammatory Role by Augmenting IL-17 and IFN Production. Epub 10.1093/ibd/izaa121
Mittal L Srivastava M Kumari A Tonk RK Awasthi A Asthana S. Jan 2021 Interplay among Structural Stability Plasticity and Energetics Determined by Conformational Attuning of Flexible Loops in PD-1. Epub 10.1021/acs.jcim.0c01080
Sakshi Talwar Manitosh Pandey Chandresh Sharma Rintu Kutum Josephine Lum Daniel Carbajo Renu Goel Michael Poidinger Debasis Dash Amit Singhal and Amit Kumar Pandey 2020 Role of VapBC12 Toxin-antitoxin locus in cholesterol induced mycobacterial persistence mSystems 10.1128/mSystems.00855-20
Dipanka Tanu Sarmah Nandadulal Bairagi and Samrat Chatterjee Dec 2020 Tracing the footsteps of autophagy in computational biology Briefings in Bioinformatics 10.1093/bib/bbaa286
Shivangi Mishra Jayesh Kumar Sevak G Aneeshkumar Arimbasseri Anamica Das Shinjini Bhatnagar and Suchitra D. Gopinath Nov 2020 Umbilical cord tissue is a robust source for mesenchymal stem cells with enhanced myogenic differentiation potential compared to cord blood Scientific Reports
Archana Pant Satyabrata Bag Bipasa Saha Jyoti Verma Pawan Kumar Sayantan Banerjee Bhoj Kumar Yashwant Kumar Anbumani Desigamani Suhrid Maiti Tushar K Maiti Sanjay K Banerjee Rupak K Bhadra Hemanta Koley Shanta Dutta G. Balakrish Nair Thandavarayan Ramamurthy Bhabatosh Das Molecular Insights into the genome dynamics and interactions between core and acquired genome of Vibrio cholerae Proc Natl Acad Sci USA
Bhabatosh Das and Rupak K. Bhadra pppGpp Metabolism and Antimicrobial Resistance in Bacterial Pathogens Frontiers in Microbiology
Dipayan Rakshit Shreya Dasgupta Bhabatosh Das Rupak K. Bhadra Functional insights into the role of gppA in pppGpp metabolism of Vibrio cholerae Frontiers in Microbiology
Samal 2020 Tetramerizing tGCN4 Domain Facilitates Production of Influenza A H1N1 M2e Higher Order Soluble Oligomers that Show Enhanced Immunogenicity In vivo J. Biol. Chem.jbc 10.1074/jbc.RA120.013233
Kumar A Kumar Y Kumar J Kumar S Kumar N and Gopinath S.D Jul 2020 Metabolomic analysis of primary human skeletal muscle cellsduring myogenic progression Scientific Reports 10.1038/s41598-020-68796-4
Hilal Ahmed Parray1 Shivangi Shukla1 Sweety Samal Tripti Shrivastava Shubbir AhmedChandresh Sharma Rajesh Kumar may 2020 Hybridoma technology a versatile method for isolation of monoclonalantibodies its applicability across species limitations advancement andfuture perspectives ELSEVIER 10.1016/j.intimp.2020.106639
Naseem Ahmed Khan Mohit Singla Sweety Samal Rakesh Lodha and Guruprasad R. Medigeshi may 2020 Respiratory Syncytial Virus-Induced Oxidative Stress Leads to an Increase in Labile Zinc Pools in Lung Epithelial Cells mSphere 10.1128/mSphere.00447-20
Mittal L Kumari A Srivastava M Singh M Asthana S may 2020 Identification of potential molecules against COVID-19 main protease through structure-guided virtual screening approach. Journal of Biomolecular Structure and Dynamics 10.1080/07391102.2020.1768151
Aggarwal Suruchi Sanjay K. Banerjee Narayan Chandra Talukdar and Amit Kumar Yadav May 2020 Post-translational modification crosstalk and hotspots in sirtuin interactors implicated in cardiovascular diseases Frontiers in Genetics 11 10.3389/fgene.2020.00356/full
Aggarwal Suruchi Ajay Kumar Shilpa Jamwal Mukul Kumar Midha Narayan Chandra Talukdar and Amit Kumar Yadav May 2020 HyperQuantA Computational Pipeline for Higher Order Multiplexed Quantitative Proteomics. Proteomics 10.1021/acsomega.0c00515
Kumar A, Bag S, Das B., Novel genetic tool to study the stability of genomic islands., Recent Patents Biotechnology, 0.239, 12, 3, 200-207, 10.2174/1872208312666180223113618.
Dutta, A.K., Choudhary, E., Wang, X., Záhorszka, M., Forbak, M., Lohner, P., Jessen, H.J., Agarwal, N., Korduláková, J., and JessenTrefzer, C., Trehalose conjugation enhances toxicity of photosensitizers against mycobacteria., ACS Central Science, 12.685, 5, 4, 644-650, 10.1021/acscentsci.8b00962
Choudhary, E., Sharma, R., Kumar, Y., Agarwal, N., Conditional Silencing by CRISPRi Reveals the Role of DNA Gyrase in Formation of Drug-Tolerant Persister Population in Mycobacterium tuberculosis, Front Cell Infect Microbiol., 5.79, 9, , 70, 10.3389/fcimb.2019.00070
Das R, Dhiman A, Mishra SK, Haldar S, Sharma N, Bansal A, Ahmad Y, Kumar A, Tyagi JS, Sharma TK. , Structural switching electrochemical DNA aptasensor for the rapid diagnosis of tuberculous meningitis., Int J Nanomedicine., 5.115, 14, , 2103-2113, 10.2147/IJN.S189127.
Pergu, R., Dagar, S., Kumar, H., Kumar, R.,Bhattacharya, J., and Mylavarapu, S.V.S. , The chaperone ERp29 is required for tunneling nanotube formation by stabilizing MSec., Journal of Biological Chemistry, 4.238, 294, 18, 7177-7193, 10.1074/jbc.RA118.005659
Negi, B., Poonam, P., Ansari, M.F., Kumar, D., Aggarwal, S., Singh, R., Azam, R., Rawat, D.S., Synthesis, antiamoebic activity and docking studies of metronidazole-triazole-styryl hybrids., European Journal of Medicinal Chemistry, 5.573, 150, , 633-641, 10.1016/j.ejmech.2018.03.033
Sadaf, S., Singh, A., Awasthi, D., Nagarkoti, S., Agrahari, A., Srivastava, R., Jagavelu, K., Kumar, S., Barthwal, M.K., and Dikshit, M., Augmentation of iNOS expression in myeloid progenitor cells expedites neutrophil differentiation, Journal of Leukocyte Biology, 3.757, 106, 2, 397-412, 10.1002/JLB.1A0918-349RR
Srivastava, M., Suri, C., Asthana, S., What modulates the Usp7 function: A dynamic pocket or inter-regulatory domains? , Biophysical Journal, 3.854, 116, 3, 340a-341a,
Tripathi, P., Sedimbi, S. K., Singh, A. K., Löfbom, L., Issazadeh-Navikas, S., Weiss, S., Förster, I., Karlsson, M., Yrlid, U., Kadri, N., & Cardell, S. L., Innate and adaptive stimulation of murine diverse NKT cells result in distinct cellular responses, European Journal of immunology, 4.404, 49, 3, 443-453, 10.1002/eji.201847647
Nagarkoti S, Sadaf S, Awasthi D, Chandra T, Jagavelu K, Kumar S, Dikshit M., L-Arginine and tetrahydrobiopterin supported nitric oxide production is crucial for the microbicidal activity of neutrophils. , Free Radic Res. , 4.1, 53, 3, 281-292, 10.1080/10715762.2019.1566605.
Hoh JK, Lappas M, Liu C, Qiao C, Pallavi K, Takeda J, Kim YJ., Preterm birth rate and dilemma of preterm labor treatment in Asia., Placenta, 3.177, 79, , 68-71, 10.1016/j.placenta.2019.01.005.
Mishra, S.K., Jain, N., Shankar, U., Tawani, A., Sharma, T.K., Kumar, A, Characterization of highly conserved G-quadruplex motifs as potential drug targets inStreptococcus pneumonia. , Scientific Reports, 3.998, 9, , 1791, https://doi.org/10.1038/s41598-018-38400-x
Tandon, H., Sharma, A., Sandhya, S., Srinivasan, N., Singh R, Mycobacterium tuberculosis Rv0366c-Rv0367c encodes a non-canonical PezAT-like toxin-antitoxin pair., Scientific Reports, 3.998, 9, 1163, , https://doi.org/10.1038/s41598-018-37473-y
Menon R, Debnath C, Lai A, Guanzon D, Bhatnagar S, Kshetrapal PK, Sheller-Miller S, Salomon C; Garbhini Study Team., Circulating Exosomal miRNA Profile During Term and Preterm Birth Pregnancies: A Longitudinal Study., Endocrinology, 5.399, 160, 2, 249-275, 10.1210/en.2018-00836.
Thakur, S.K., Srivastava, M., Kumar, A., Goel, R., Asthana, S., Eswaran, S.K., A Multidimensional Approach to Explore the Use of a Small Heterobifunctional Crosslinker based on a Metabolite of the Kynurenine Pathway, Journal of Proteomics and Bioinformation,, 0.41, 12, 1, 0010-0017, 10.4172/0974-276X.1000491
Roy, S., Rizvi, Z. A., Awasthi, A., Metabolic Checkpoints in Differentiation of Helper T Cells in Tissue Inflammation, Front Immunol, 4.716, 14, 9, 3036, https://doi.org/10.3389/fimmu.2018.03036.
Lavania S, Das R, Dhiman A, Myneedu VP, Verma A, Singh N, Sharma TK, Tyagi JS., Aptamer-Based TB Antigen Tests for the Rapid Diagnosis of Pulmonary Tuberculosis: Potential Utility in Screening for Tuberculosis., ACS Infect Dis, 4.614, 4, 12, 1718-1726, 10.1021/acsinfecdis.8b00201
Dhiman, A., Anand, A., Malhotra, A., Khan, E., Santra, V., Kumar, A., Sharma, T.K, Rational truncation of aptamer for cross-species application to detect krait envenomation, Scientific Reports, 3.998, , 12, 17795, 10.1038/s41598-018-35985-1.
Ojha, A., Bhasym, A., Mukherjee, S., Annarapu, G. K., Bhakuni, T., Akbar, I., Seth, T., Vikram, N. K., Vrati, S., Basu, A., Bhattacharyya, S., & Guchhait, P. , Platelet factor 4 promotes rapid replication and propagation of Dengue and Japanese encephalitis viruses, EBioMedicine, 2.617, 39, 332-347, , https://doi.org/10.1016/j.ebiom.2018.11.049.
Kaur, H., Kumar, A.,, Sharma, T.K, Analytical techniques for characterization of biological molecules – proteins and aptamers/oligonucleotides, Bioanalysis, 2.371, 11, 2, 103-117, https://doi.org/10.4155/bio-2018-0225.
Pandey, M., Talwar, S., Bose, S., Pandey, A.K., Iron homeostasis in Mycobacterium tuberculosis is essential for persistence., Scientific Reports,, 4.122, , 8, 17359, 10.1038/s41598-018-35012-3.
Rathore, D.K., Holmes, T.H., Nadeau, K.C., Mittal, P., Batra, A., Rosenberg-Hasson, Y., Sopory, S., Gupta, R., Chellani, H.K., Aggarwal, K.C., Bal, V., Natchu, U.C.M., Bhatnagar, S., Tavassoli, M., Lyell, D.J., Rath, S., Wadhwa, N., Maecker, H.T., Differences in multiple immune parameters between Indian and U.S. infants., PLoS One,, 2.776, 13, 11, e0207297, 10.1371/journal.pone.0207297.
Vinothkumar, K., Bhalara, S.R., Shah, A., Ramamurthy, T., Niyogi, S.K., Kumar, G.N., Bhardwaj, A.K., nvolvement of topoisomerase mutations and qnr and aac(6') Ib-cr genes in conferring quinolone resistance to THSTI ANNUAL REPORT 2018-2019 | 119 clinical isolates of Vibrio and Shigella spp. from Kolkata, India (1998-2009), Journal of Global Antimicrobial Resistance, 0.826, , 13, 85-90, 10.1016/j.jgar.2017.10.013.
Kumari, P., Lavania, S., Tyagi, S., Dhiman, A., Rath, D., Anthwal, D., Gupta, R.K., Sharma, N., Gadpayle, A.K., Taneja, R.S., Sharma, N., Sharma, T. K, Haldar, H., and Tyagi, J.S., A novel aptamer-based test for the rapid and accurate diagnosis of pleural tuberculosis., Analytical Biochemistry, 2.45, 1, , 564-565, 10.1016/j.ab.2018.10.019.
Sharma, S., Tripathi, P., Gut microbiome and type 2 diabetes: where we are and where to go?, J Nutr Biochem. , 4.49, 63, , 101-108, 10.1016/j.jnutbio.2018.10.003.
Chowdhury, K., Kumar, S., Sharma, T., Sharma, A., Bhagat, M., Kamai, A., Asthana, S., Mondal, M., Presence of a consensus DNA motif at nearby DNA sequence of the mutation susceptible CG nucleotides, Gene, 0.53, , 639, 85-95, 10.1016/j.gene.2017.10.001.
Fais, A., Era, B., Asthana, S., Sogos, V., Medda, R., Santana, L., Uriarte, E, Coumarin derivatives as promising xanthine oxidase inhibitors., International Journal of Biological Macromolecules, 4.784, , 120, 1286-1293, 10.1016/j.ijbiomac.2018.09.001.
Singh, A.K., Tripathi, P., Cardell, S.L., Type II NKT cells: an elusive population with immunoregulatory properties, Frontiers in Immunology, 4.716, , 9, 1969, 10.3389/fimmu.2018.01969.
Atmakuri, K., Penn-Nicholson, A., Tanner, R., Dockrell, H.M, Meeting report: 5th Global Forum on TB Vaccines,, Tuberculosis,, 1.26, , 113, 55-64, 10.1016/j.tube.2018.08.013.
Kalra, P., Mishra, S.K., Kaur, S., Prasad, H.P., Kumar, A., Sharma, T.K., Tyagi, J.S., G-quadruplex forming DNA aptamers inhibit DNA-binding function of HupB (Rv2986c) and Mycobacterium tuberculosis entry into host cells., Molecular Therapy Nucleic Acids, 2.77, 13, 99-109, 10.1016/j.omtn.2018.08.011.
Mawatwal, S., Behura, A., Mishra, A., Singh, R., Dhiman, R., Calcimycin induced IL-12 production inhibits intracellular mycobacterial growth by enhancing autophagy., Cytokine,, 3.078, , 111, 1 to 12, 10.1016/j.cyto.2018.07.033.
Kumar, R., Qureshi, H., Deshpande, S., Bhattacharya J, Broadly neutralizing antibodies in HIV-1 treatment and prevention., Therapeutic Adv Vaccines and Immunotherapy,, _, 4, 6, 61-68, 10.1177/2515135518800689.
Sharma, T., Sharma, C., Sankhyan, A., Bedi, S.P., Bhatnagar, S., Khanna, N., Gautam, V., Sethi, S., Vrati, S., Tiwari, A., Serodiagnostic evaluation of recombinant CdtB of S. Typhi as a potential candidate for acute typhoid. I, Immunology Research, 2.88, 4, 66, 503-512, 10.1007/s12026-018-9009-4.
Dhiman, A., Haldar, S., Mishra, S.K., Sharma, N., Bansal, A., Ahmad, Y., Kumar, A., Sharma, T.K., Tyagi, J.S., Generation and application of DNA aptamers against HspX for accurate diagnosis of tuberculous meningitis, Tuberculosis, 0.38, , 112, 27-36, 10.1016/j.tube.2018.07.004
Chawla, A.S., Kanodia, P., Mukherjee, A., Jain, V., Kaur, G., Coshic, P., Chatterjee, K., Wadhwa, N., Natchu, U.C.M., Sopory, S., Bhatnagar, S., Majumder, P.P., George, A., Bal, V., Rath, S., Prabhu, S.B, Cell-intrinsic regulation of peripheral memory-phenotype T cell frequencies., PLoS One, 2.74, 12, 13, e0200227,
Kaur, H., Bruno, J.G., Sharma, T.K, Aptamers in the Therapeutics and Diagnostics Pipelines., Theranostics, 8.063, , 8, 4016-4032, 10.7150/thno.25958.
Anang, S., Kaushik, N., Surjit, M. , Recent advances towards the development of a potent antiviral against the Hepatitis E virus, Journal of Clinical and Translational Hepatology, 4.18, , 6, 44013, 10.14218/JCTH.2018.00005.
Kaushik, N., Anang, S., Ganti, K.P., Surjit, M., Zinc: A potential antiviral against hepatitis E virus infection?, DNA and Cell Biology,, 2.918, , 37, 593-599, 10.1089/dna.2018.4175.
Wilhelmson, A.S., Stubelius Fogelstrand, A.P., Rodriguez, M.L., Johansson, M.E., Fagman, J.B., Duhlin, A., Tripathi, P., Camponeschi, A., Rolink, A.G., Giwercman, A., Nissbrandt, H., Carlsten, H., Mårtensson, I.L., Karlsson, M.C.I., Tivesten, Å., Testosterone is an endogenous regulator of BAFF and splenic B-cell number., Nature Communication, 11.878, 1, 9, 2067, 10.1038/s41467-018-04408-0
Galhotra, P., Prabhakar, P., Meghwani, H., Mohammed, S.A., Banerjee, S.K., Seth, S., Hote, M.P., Reeta, K.H., Ray, R., Maulik, S.K., Beneficial effects of fenofibrate in pulmonary hypertension in rats, Molecular and Cellular Biochemistry,, 1.59, , 120, 1286-1293, 10.1007/s11010-018-3355-3.
Dhiman, R., Singh, R, Recent advances for identification of new scaffolds and drug targets for Mycobacterium tuberculosis., IUBMB Life,, 3.051, , 70, 905-916, 10.1002/iub.1863.
Kalra P, Dhiman A, Cho WC, Bruno JG, Sharma TK., Simple methods and rational design for enhancing aptamer sensitivity and specificity., Frontiers in Molecular Biosciences, 3..565, , 5, 41, 10.3389/fmolb.2018.00041.
Jha, B., Kumar, D., Sharma, A., Dwivedy, A., Singh, R., Biswal, B. K, . Identification and structural characterization of a histidinol phosphate phosphatase from Mycobacterium tuberculosis, Journal of Biological Chemistry, 4.106, 26, 293, 10102-10118, 10.1074/jbc.RA118.002299.
Boliar, S., Patil, S., Shukla, B.N., Ghobbeh, A.,Deshpande, S., Chen, W., Guenaga, J., Dimitrov, D.S., Wyatt, R.T., Chakrabarti, B.K. , Ligand accessibility to the HIV-1 Env co-receptor binding site can occur prior to CD4 engagement and is independent of viral tier category, Virology, 519, 99-105, 10.1016/j.virol.2018.04.002.
Malik, S., Awasthi, A., Transcriptional Control of Th9 Cells: Role of Foxo1 in Interleukin-9 Induction., Frontiers in Immunology, 4.716, 9, , 995, 10.3389/fimmu.2018.00995.
Agarwal S, Tiwari P, Deep A, Kidwai S, Gupta S, Thakur KG, Singh R., System-Wide Analysis Unravels the Differential Regulation and In Vivo Essentiality of Virulence-Associated Proteins B and C Toxin-Antitoxin Systems of Mycobacterium tuberculosis. , The Journal of infectious diseases, 5, 217, 11, 1809-1820, 10.1093/infdis/jiy109.
Mandal H, Katiyar SS, Swami R, Kushwah V, Katare PB, Kumar Meka A, Banerjee SK, Popat A, Jain S., ε-Poly-l-Lysine/plasmid DNA nanoplexes for efficient gene delivery in vivo., Int J Pharm, 5.827, 542, 1-2, 142-152, 10.1016/j.ijpharm.2018.03.021
Sarkar S, Das B, Banerjee SK, Insights into the human gut microbiome and cardiovascular diseases., Journal of Practice in Cardiology Science, 4.039, 4, 1, 41913, 10.4103/jpcs.jpcs_18_18.
Gupta N, Duggal S, Kumar A, Saquib NM, Rao KVS., Concurrent interactome and metabolome analysis reveals role of AKT1 in central carbon metabolism., BMC Research Notes, 1.09, , 11, 270, 10.1186/s13104-018-3364-z.
Meghwani, H., Prabhakar, P., Mohammed, S.A., Dua, P., Seth, S., Hote, M.P., Banerjee, S.K., Arava, S., Ray, R., Maulik, S.K., Beneficial Effect of Ocimum sanctum (Linn) against Monocrotalin Induced Pulmonary Hypertension in Rats., Medicines (Basel), 2, 5, , 10.3390/medicines5020034.
Bagri NK, Bagri N, Jana M, Gupta AK, Wadhwa N, Lodha R, Kabra SK, Chandran A, Aneja S, Chaturvedi MK, Sodhi J, Fitzwater SP, Chandra J, Rath B, Kainth US, Saini S, Black RE, Santosham M, Bhatnagar S, Efficacy of oral zinc supplementation in radiologically confirmed pneumonia: secondary analysis of a randomized controlled trial, Journal of Tropical Pediatrics, 0.7, 64, 2, 110-117, 10.1093/tropej/fmx036.
Bhattacharya J December 2018 HIV prevention treatment strategies - Current challenges future prospects Indian J Med Res. 10.4103/0971-5916.252150
Ramani S; Stewart J C; Laucirica R D; Ajami J N; Robertson B; Autran A C; Shinge D; Rani S Anandan S; Hu l; Ferreon C J; Kuruvilla A K; Petrosino F J; Prasad V V B; Bode L; Kang G; Estes K M November 2018 Human milk oligosaccharides milk microbiome and infant gut microbiome modulate neonatal rotavirus infection Nature Communication 10.1038/s41467-018-07476-4
Singhal R; Rathore D K; Bhakuni T; Seth T; Guchhait P March 2019 Absence of Nonclassical Monocytes in Hemolytic Patients Free Hb and NO-Mediated Mechanism Journal of Immunology Research 10.1155/2019/1409383
Shet A; Kang G March 2019 Dengue in India towards a better understanding of priorities and progress International Journal of Infectious Diseases 10.1016/j.ijid.2019.03.008
Verma J; Bag S; Saha B; Kumar P; Ghosh T S; Dayal M; Dey P; Anbumani D; Kumar D; Rana P; Kumar B; Maiti T; Sharma N C; Bhadra R K; Mutreja A; Nair G B; Ramamurthy T; Das B March 2019 Genomic plasticity associated with antimicrobial resistance in Vibrio cholerae Proc. Natl. Acad. Sci USA 10.1073/pnas.1900141116
Ghosh P; Sinha R; Samanta P; Saha DR; Koley H; Dutta S; Okamoto K; Ghosh A; Ramamurthy T; Mukhopadhyay AK February 2019 Haitian Variant Vibrio cholerae O1 Strains Manifest Higher Virulence in Animal Models Front Microbiol 10.3389/fmicb.2019.00111
Bhatnagar S Majumder PP Salunke DM February 2019 A Pregnancy Cohort to Study Multidimensional Correlates of Preterm Birth in India Study Design Implementation and Baseline Characteristics of the Participants American Journal of Epidemiology 10.1093/aje/kwy284
Das R; Dhiman A; Kapil A; Bansal V; Sharma TK January 2019 Aptamer-mediated colorimetric and electrochemical detection of Pseudomonas aeruginosa utilizing peroxidase-mimic activity of gold NanoZyme Analytical and Bioanalytical Chemistry 10.1007/s00216-018-1555-z
Weill F; Domman D; Njamkepo E; Almesbahi AA; Naji M; Nasher SS; Rakesh A; Assiri AM; Sharma NC; Kariuki S; Pourshafie MR; Rauzier J; Abubakar A; Carter JY; Wamala JF; Seguin C; Bouchier C; Malliavin T; Bakhshi B; Abulmaali HHN; Kumar D; Njoroge SM; Malik MR; Kiiru J; Luquero FJ; Azman AS; Ramamurthy T; Thomson NR; Quilici ML January 2019 Genomic insights into the 2016-2017 cholera epidemic in Yemen Nature 10.1038/s41586-018-0818-3
Awasthi SP; Chowdhury N; Neogi SB; Hinenoya A; Hatanaka N; Chowdhury G; Ramamurthy T; Yamasaki S December 2018 Development of a multiplex PCR assay for the detection of major virulence genes in Vibrio cholerae including non-O1 and non-O139 serogroups Microbiol Methods 10.1016/j.mimet.2018.12.012
Kar M; Nisheetha A; Kumar A; Jagtap S; Shinde J; Singla M; M S; Pandit A; Chandele A; Kabra SK; Krishna S; Roy R; Lodha R; Pattabiraman C; Medigeshi GR December 2018 Isolation and molecular characterization of Dengue virus clinical isolates from pediatric patients in New Delhi Isolation and molecular characterization of dengue virus clinical isolates from pediatric patients in New Delhi 10.1016/j.ijid.2018.12.003
Adela R; Reddy PNC; Ghosh TS; Aggarwal S; Yadav AK; Das B; Banerjee SK January 2019 Serum Protein Signature of Coronary Artery Disease in Type 2 Diabetes Mellitus Journal of Translational Medicine 10.1186/s12967-018-1755-5
Giri S; Nair NP; Mathew A; Manohar B; Simon A; Singh T; Suresh Kumar S; Mathew MA; Babji S; Arora R; Girish Kumar CP; Venkatasubramanian S; Mehendale S; Gupte MD; Kang G January 2019 Rotavirus gastroenteritis in Indian children 5 years hospitalized for diarrhoea 2012 to 2016 BMC Public Health 10.1186/s12889-019-6406-0
Bagul P; Katare P; Bugga P; Dinda AK; Banerjee SK November 2018 SIRT-3 Modulation by Resveratrol Improves Mitochondrial Oxidative Phosphorylation in Diabetic Heart through Deacetylation of TFAM Cells 10.3390/cells7120235
Anang S; Kaushik N; Hingane S; Kumari A; Gupta J; Asthana S; Shalimar; Nayak B; Ranjith-Kumar CT; Surjit M October 2018 Potent Inhibition of Hepatitis E Virus Release by a Cyclic Peptide Inhibitor of the Interaction between Viral Open Reading Frame 3 Protein and Host Tumor Susceptibility Gene 101 Journal of Virology 10.1128/JVI.00684-18
Srivastava M; Suri C; Singh M; Mathur R; Asthana S September 2018 Molecular dynamics simulation reveals the possible druggable hot-spots of USP7 Oncotarget 10.18632/oncotarget.26136
Chowdhury G; Stine OC; Rajendran K; Mukhopadhyay AK; Okamoto K; Ramamurthy T October 2018 Detection of Uncommon Enteric Bacterial Pathogens from Acute Diarrheal Specimens using SYBR-Green Real Time PCR Jpn J Infect Disease 10.7883/yoken.JJID.2018.142
Arora G; Chaudhary D; Kidwai S; Sharma D; Singh R November 2018 CitE Enzymes Are Essential for Mycobacterium tuberculosis to Establish Infection in Macrophages and Guinea Pigs Frontiers in Cellular and Infection Microbiology 10.3389/fcimb.2018.00385
Thakur P; Choudhary E; Pareek M; Agarwal N November 2018 Regulation and overexpression studies of YidC in Mycobacterium tuberculosis Scientific Reports 10.1038/s41598-018-35475-4
Deep A; Tiwari P; Agarwal S; Kaundal S; Kidwai S; Singh R; Thakur KG October 2018 Structural functional and biological insights into the role of Mycobacterium tuberculosis VapBC11 toxinantitoxin system targeting a tRNase to tackle mycobacterial adaptation Nucleic Acids Research 10.1093/nar/gky924
Anand R; Sarmah D T; Chatterjee S July 2018 Extracting proteins involved in disease progression using temporally connected networks BMC Systems Biology 10.1186/s12918-018-0600-z
Das S; Bansal M; Bhattacharya J August 2018 Characterization of the membrane-bound form of the chimeric B/C recombinant HIV-1 Env LT5.J4b12C Journal of General Virology 10.1099/jgv.0.001141
Gupta I;Varshney NK; Khan S August 2018 Emergence of Members of TRAF and DUB of Ubiquitin Proteasome System in the Regulation of Hypertrophic Cardiomyopathy Frontiers in Genetics 10.3389/fgene.2018.00336
Das B; Ghosh T S; Kedia S; Rampal R; Saxena S; Bag S; Mitra R; Dayal M; Mehta O; Surendranath A Travis S P L ; Tripathi P; Nair G B; Ahuja V July 2018 Analysis of the Gut Microbiome of Rural and Urban Healthy Indians Living in Sea Level and High Altitude Areas Scientific Reports 10.1038/s41598-018-28550-3
Rana A; Kumar V; Tiwari L; Thakur A; Meena CL; Mahajan D June 2018 Triflic Anhydride Promoted Synthesis of Primary Amides and their Conversion into Nitriles Synopen 10.1055/s-0037-1610154
Kumar V; Rana A; Meena CL; Sharma N; Kumar Y; Mahajan D August 2018 Electrophilic Activation of Carboxylic Anhydrides for Nucleophilic Acylation Reactions Synthesis 10.1055/s-0037-1609564
Tiwari L; Kumar V; Kumar B; Mahajan D June 2018 A practically simple catalyst free and scalable synthesis of N-substituted ureas in water RSC Advances 10.1039/C8RA03761B
Bhatia D; Sinha A; Hari P; Sopory S; Saini S; Puraswani M; Saini H; Mitra DK; Bagga A JULY 2018 Rituximab modulates T- and B-lymphocyte subsets and urinary CD80 excretion in patients with steroid-dependent nephrotic syndrome Pediatric Research 10.1038/s41390-018-0088-7
Bag S; Ghosh TS; Banerjee S; Mehta O; Verma J; Dayal M; Desigamani A; Kumar P; Saha B; Kedia S; Ahuja V; Ramamurthy T; Das B July 2018 Molecular Insights into Antimicrobial Resistance Traits of Commensal Human Gut Microbiota Microbial Ecology 10.1007/s00248-018-1228-7
Samal S; Das S; Boliar S; Qureshi H; Shrivastava T; Kumar N; Goswami S; Bansal M; Chakrabarti B July 2018 Cell surface ectodomain integrity of a subset of functional HIV-1 envelopes is dependent on a conserved hydrophilic domain containing region in their C-terminal tail Retrovirology 2018 10.1186/s12977-018-0431-4
Guruprasad R Medigeshi; Katja Fink; Nagendra R Hegde July 2018 Position Paper on Road Map for RNA Virus Research in India Frontiers in Microbiology 10.3389/fmicb.2018.01753
Lekshmi N; Joseph I; Ramamurthy T; Thomas S May 2018 Changing facades of Vibrio cholerae An enigma in the epidemiology of cholera Indian Journal of Medical Research 10.4103/ijmr.IJMR28017
Tripathi N; Singh P; Luxami V; Mahajan D; Kumar S May 2018 Spermine detection from urine and blood serum using ionic self-assembly of benzimidazolium based dipod and dodecylsulfate Sensors and Actuators B Chemical 10.1016/j.snb.2018.05.050
Gupta I; Aggarwal S; Singh K; Yadav A; Khan S May 2018 Ubiquitin Proteasome pathway proteins as potential drug targets in parasite Trypanosoma cruzi Scientific Reports 10.1038/s41598-018-26532-z
Mattapally S; Singh M; Murthy KS; Asthana S; Banerjee SK February 2018 Computational modeling suggests impaired interactions between NKX2.5 and GATA4 in individuals carrying a novel pathogenic D16N NKX2.5 mutation Oncotarget 10.18632/oncotarget.24459
Kuila B; Kumar K; Mahajan D; Singh P; Bhargava G November 2017 Acetylenic Ester Promoted Tandem Ring Opening of Dienyl Thiazolidin-4-ones and Cyclizations A Facile and Chemoselective Synthesis of Functionalized Pyridine-2-carboxylates Thieme 10.1055/s-0036-1591721
Singh N; Goel R; Jain E February 2018 Differential Metabolic Pathway Analysis of the Proteomes of Leishmania donovani and Leptomonas seymouri Proteomics Clinical Application 10.1002/prca.201600087
Gupta I; Singh K; Varshney NK; Khan S February 2018 Delineating Crosstalk Mechanisms of the Ubiquitin Proteasome System that Regulate Apoptosis Frontiers in Cell and Developmental Biology 2018 10.3389/fcell.2018.00011
Chandru S; Nair V; Anang S; Mandal SD; Pareek M; Kaushik N; Srivastava A; Saha S Shalimar; Nayak B; Ranjith-Kumar CT; Surjit M January 2018 Host-virus protein interaction network reveals the involvement of multiple host processes in the life cycle of hepatitis E virus mSystems 10.1128/mSystems.00135-17
Rinki Kumari; Nirpendra Singh; Malik Z. Abdin; Arvind H. Patel; Guruprasad R. Medigeshi January 2018 Dengue Virus Capsid Interacts with DDX3XA Potential Mechanism for Suppression of Antiviral Functions in Dengue Infection Front. Cell. Infect. Microbiol 10.3389/fcimb.2017.00542
Shweta Duggal; Noor Jailkhani; Mukul Kumar Midha; Kanury VS Rao; Ajay Kumar January 2018 Rb interactome data and its modulations during cell cycle progression in HEK 293 cells Data in Brief DIB-D-17-00939R1
Shweta Duggal Noor Jailkhani Mukul Kumar Midha Namita Agrawal Kanury VS Rao Ajay Kumar January 2018 Defining the Akt1 interactome and its role in regulating the cell cycle Scientific Reports 10.1038/s41598-018-19689-0
Singh P; Arora A; Strand TA; Sommerfelt H; Lodha R; Kabra SK; Aneja S; Natchu UCM; Chandra J; Rath B; Kumar Sharma V; Kumari M; Saini S; Bhatnagar S; Wadhwa N. December 2017 Predictors of death in infants with probable serious bacterial infection Pediatr Res 10.1038/pr.2017.299
Kumar P Bag S Ghosh TS Dey P Dayal M Saha B Verma J Pant A Saxena S Desigamani A Rana P Kumar D Sharma NC Hanpude P Maiti TK Mukhopadhyay AK Bhadra RK Nair GB Ramamurthy T Das B. October 2017 Molecular Insights into Antimicrobial Resistance Traits of Multidrug Resistant Enteric Pathogens isolated from India Scientific Reports 10.1038/s41598-017-14791-1
Weill FX Domman D Njamkepo E Tarr C Rauzier J Fawal N Keddy KH Salje H Moore S Mukhopadhyay AK Bercion R Luquero FJ Ngandjio A Dosso M Monakhova E Garin B Bouchier C Pazzani C Mutreja A Grunow R Sidikou F Bonte L Breurec S Damian M Njanpop-Lafourcade BM Sapriel G Page AL Hamze M Henkens M Chowdhury G Mengel M Koeck JL Fournier JM Dougan G Grimont PAD Parkhill J Holt KE Piarroux R Ramamurthy T Quilici ML Thomson NR. November 2017 Genomic history of the seventh pandemic of cholera in Africa Science 10.1126/science.aad5901
Banerjee SK Seth S. November 2017 An update on mid-term international society of heart research Indian section meeting Cardiovascular research convergence 2017 J Pract Cardiovasc Sc 10.4103/jpcs.jpcs4417
Pandey AD Goswami S Shukla S Das S Ghosal S Pal M Bandyopadhyay B Ramachandran V Basu N Sood V Pandey P Chakrabarti J Vrati S Banerjee A. October 2017 Correlation of altered expression of a long non-coding RNA NEAT1 in peripheral blood mononuclear cells with dengue disease progression Journal of Infection 10.1016/j.jinf.2017.09.016
Bhavya Khullar Renu Balyan Neelam Oswal Nidhi Jain Amita Sharma Malik Z. Abdin Arvind Bagga Shinjini Bhatnagar Nitya Wadhwa Uma Chandra Mouli Natchu Anna George Satyajit Rath Vineeta Bal Shailaja Sopory October 2017 Interaction of CD80 with Neph1 A potential mechanism of podocyte injury Clinical and Experimental Nephrology 10.1007/s10157-017-1489-3
Kaushik N; Subramani C; Anang S; Muthumohan R; Shalimar Nayak B October 2017 Zinc Salts Block Hepatitis E Virus Replication by Inhibiting the Activity of Viral RNA-Dependent RNA Polymerase Journal of Virology 10.1128/JVI.00754-17
Saqib Kidwai Chan-Yong Park Shradha Mawatwal Prabhakar Tiwari Myung Geun Jung Tannu Priya Gosaina Pradeep Kumar David Allande Sandeep Kumar Avinash Bajaj Yun-Kyung Hwang Chang Sik Song Rohan Dhiman Ill Young Lee Ramandeep Singh September 2017 Dual Mechanism of Action of 5-Nitro-110-Phenanthroline against Mycobacterium tuberculosis FEBS Journal 10.1128/AAC.00969-17
Deep A Kaundal S Agarwal S Singh R and Thakur KG October 2017 Crystal structure of Mycobacterium tuberculosis VapC20 toxin and its interaction with cognate antitoxin VapB20 suggests a model for toxin-antitoxin assembly FEBS Journal 10.1111/febs.14289
Irene Bosch, Helena de Puig, Megan Hiley, Marc Carré-Camps, Federico Perdomo-Celis, Carlos F. Narváez, Doris M. Salgado, Dewahar Senthoor, Madeline O’Grady, Elizabeth Phillips, Ann Durbin, Diana Fandos, Hikaru Miyazaki, Chun-Wan Yen, Margarita Gélvez-Ramírez, Rajas V. Warke, Lucas S. Ribeiro, Mauro M. Teixeira, Roque P. Almeida, José E. Muñóz-Medina, Juan E. Ludert, Mauricio L. Nogueira, Tatiana E. Colombo, Ana C. B. Terzian, Patricia T. Bozza, Andrea S. Calheiros, Yasmine R. Vieira, Giselle Barbosa-Lima, Alexandre Vizzoni, José Cerbino-Neto, Fernando A. Bozza, Thiago M. L. Souza, Monique R. O. Trugilho, Ana M. B. de Filippis, Patricia C. de Sequeira, Ernesto T. A. Marques, Tereza Magalhaes, Francisco J. Díaz, Berta N. Restrepo, Katerine Marín, Salim Mattar, Daniel Olson, Edwin J. Asturias, Mark Lucera, Mohit Singla, Guruprasad R. Medigeshi, Norma de Bosch, Justina Tam, Jose Gómez-Márquez, Charles Clavet, Luis Villar, Kimberly Hamad-Schifferli, Lee Gehrke September, 2017 Rapid antigen tests for dengue virus serotypes and Zika virus in patient serum Science Translational Medicine 10.1126/scitranslmed.aan1589
Sakshi Malik, Srikanth Sadhu, Srikanth Elesela, Ramendra Pati Pandey, Amanpreet Singh Chawla, Deepak Sharma, Lipsa Panda, Deepak Rathore, Balram Ghosh, Vineet Ahuja & Amit Awasthi July, 2017 Transcription factor Foxo1 is essential for IL-9 induction in T helper cells Nature Communications 10.1038/s41467-017-00674-6
Bhabatosh Das; Susmita Chaudhuri; Rahul Srivastava; G Balakrish Nair;Thandavarayan Ramamurthy September, 2017 Fostering research into antimicrobial resistance in India BMJ 10.1136/bmj.j3535
Bag S., Ghosh T., Das B. September, 2017 Draft Genome Sequence of Prevotella copri isolated from the gut of healthy adult Indian Genome Announcement 10.1128/genomeA.00834-17
Saqib Kidwai; Chan-Yong Park; Shradha Mawatwal; Prabhakar Tiwari; Myung Geun Jung; Tannu Priya Gosain; Pradeep Kumar; David Alland; Sandeep Kumar; Avinash Bajaj; Yun-Kyung Hwang; Chang Sik Song; Rohan Dhiman; Ill Young Lee; Ramandeep Singh September 2017 The dual mechanism of action of 5-Nitro-110-Phenanthroline against Mycobacterium tuberculosis Antimicrobial Agents and Chemotherapy 10.1128/AAC.00969-17
Shradha Mawatwal; Assirbad Behura; Abhirupa Ghosh; Saqib Kidwai; Abtar Mishra; Amar Deep; Sakshi Agarwal; Sudipto Saha; Ramandeep Singh; Rohan Dhiman September, 2017 Calcimycin mediates mycobacterial killing by inducing intracellular calcium-regulated autophagy in a P2RX7 dependent manner Biochimica et Biophysica Acta (BBA) - General Subjects 10.1016/j.bbagen.2017.09.010
Banerjee A, Shukla S, Pandey AD, Goswami S, Bandyopadhyay B, Ramachandran V, Das S, Malhotra A, Agarwal A, Adhikari S, Rahman M, Chatterjee S, Bhattacharya N, Basu N, Pandey P, Sood V, Vrati S July, 2017 RNA-Seq analysis of peripheral blood mononuclear cells reveals unique transcriptional signatures associated with disease progression in dengue patients Translational Research 10.1016/j.trsl.2017.06.007
Kumar R, Ozorowski G, Kumar V, Holden LG, Shrivastava T, Patil S, Deshpande S, Ward AB, Bhattacharya J July, 2017 Characterization of a stable HIV-1 B/C recombinant, soluble and trimeric envelope glycoprotein (Env) highly resistant to CD4-induced conformational changes J Biol Chem 10.1074/jbc.M117.803056
Das S, Boliar S, Samal S, Ahmed S, Shrivastava T, Shukla BN, Goswami S, Bansal M, Chakrabarti BK. July, 2017 Identification and characterization of a naturally occurring, efficiently cleaved, membrane-bound, clade A HIV-1 ENV, suitable for immunogen design, with properties comparable to membrane-bound BG505 Virology 10.1016/j.virol.2017.07.001
Das, P., Kumar, A., Bairagi, N., and Chatterjee, S. July, 2017 Restoring calcium homeostasis in diabetic cardiomyocytes: An investigation through mathematical modeling Biosystems 10.1039/C7MB00264E
Kant S, Asthana S, Missiakas D, Pancholi V. July, 2017 A novel STK1-targeted small-molecule as an "antibiotic resistance breaker" against multidrug-resistant Staphylococcus aureus Scientific Reports 10.1038/s41598-017-05314-z
Parul Mehrotra; Kanury V.S. Rao; Samrat Chatterjee May, 2017 A mathematical model predicting host mitochondrial pyruvate transporter activity to be critical regulator ofMycobacterium tuberculosis pathogenicity Biosystems 10.1016/j.biosystems.2017.02.003
Anand, R.; Chatterjee, S. May, 2017 Extracting genes involved in disease from a connected network of perturbed biological processes Journal of Computational Biology PreMedline Identifier: 28294634
Anand, R.; Chatterjee, S. April, 2017 Tracking disease progression by searching paths in a temporal network of biological processes Plos One 10.1371/journal.pone.0176172
Phonindra Nath Das; Parul Mehrotra; Aseem Mishra; Nandadulal Bairagi; Samrat chatterjee April, 2017 Calcium dynamics in cardiac excitatory and non-excitatory cells and the role of gap junction Mathematical Biosciences 10.1016/j.mbs.2017.04.007
Nair VP, Anang S, Srivastava A, Surjit M. May, 2017 RNA-dependent RNA Polymerase Assay for Hepatitis E Virus Bio-protocol doi.org/10.21769/BioProtoc.2199
Nair VP and Surjit M. May, 2017 RNA Strand Displacement Assay for Hepatitis E Virus Helicase Bio-protocol doi.org/10.21769/BioProtoc.2198
Mona K Chaturvedi; Jitender Sodhi; Sean Patrick Fitzwater; Jagdish Chandra; Bimbadhar Rath; Udaypal S Kainth; Savita Saini; Robert E Black; Mathuram Santosham; Shinjini Bhatnagar May, 2017 Efficacy of oral zinc supplementation in radiologically proven pneumonia: Secondary analysis of a Randomized controlled trial Bulletin of WHO 10.1093/tropej/fmx036
Das S, Boliar S, Mitra N, Samal S, Bansal M, Koff WC, Chakrabarti BK, Membrane bound modified form of clade B Env, JRCSF is suitable for immunogen design as it is efficiently cleaved and displays all the broadly neutralizing epitopes including V2 and C2 domain-dependent conformational epitopes. Retrovirology. 2016 Nov 21;13(1):81.
Tarun Kumar Sharma; John G. Bruno; William C. Cho 2016 The Point behind Translation of Aptamers for Point of Care Diagnostics Aptamers and Synthetic Antibodies: Smithandfranklin.com NA
S Aggarwal; AK Yadav 2016 Dissecting the iTRAQ Data Analysis.Statistical Analysis in Proteomics Methods in Molecular Biology 10.1007/978-1-4939-3106-4_18
Meenakshi Kar; Mohit Singla; Anmol Chandele; Sushil K. Kabra; Rakesh Lodha; Guruprasad R. Medigeshi March, 2017 Dengue Virus Entry and Replication Does Not Lead to Productive Infection in Platelets Open Forum Infectious Diseases Journal 10.1093/ofid/ofx051
Dhiman A.; Kalra P.; Bruno J.G.; Sharma, T. K March, 2017 Aptamer based point-of- care diagnostic platforms Sensors and Actuators B 246 (2017) 535?553 IF-4.75 10.1016/j.snb.2017.02.060
Sharma, T. K.; Bruno J.G.; Dhiman, A March, 2017 ABC of DNA aptamers and related assay developments Biotechnology Advances 10.1016/j.biotechadv.2017.01.003
Amit Kumar Yadav March, 2017 Commentary: Deep Phosphoproteomic Measurements Pinpointing Drug Induced Protective Mechanisms in Neuronal Cells Frontiers in Physiology 10.3389/fphys.2017.00174
Katarzyna Karwacz, Emily R Miraldi, Maria Pokrovskii, Asaf Madi, Nir Yosef, Ivo Wortman, Xi Chen, Aaron Watters, Nicholas Carriero, Amit Awasthi, Aviv Regev, Richard Bonneau, Dan Littman, Vijay K Kuchroo Feb, 2017 Critical role of IRF1 and BATF in forming chromatin landscape during type 1 regulatory cell differentiation Nature Immunology 10.1038/ni.3683
Shweta Duggal, Noor Jailkhani, Mukul Kumar Midha, Kanury V.S. Rao, Ajay Kumar Feb, 2017 Defining the Akt1 interactome data and delineating alterations in its composition as a function of cell cycle progression Data in Brief 10.1016/j.dib.2017.02.018
Abhijeet Dhiman; Priya Kalra; Vipul Bansal; John. G. Brunod; Tarun Kumar Sharma Feb, 2017 Aptamer-based point-of-care diagnostic platforms Sensors and Actuators B: Chemical 10.1016/j.snb.2017.02.060
Daisuke Imamura , Masatomo Morita , Tsuyoshi Sekizuka, Tamaki Mizuno, Taichiro Takemura, Tetsu Yamashiro, Goutam Chowdhury, Gururaja P. Pazhani, Asish K. Mukhopadhyay, Thandavarayan Ramamurthy, Shin-ichi Miyoshi, Makoto Kuroda, Sumio Shinoda, Makoto Ohn Feb, 2017 Comparative genome analysis of VSP-II and SNPs reveals heterogenic variation in contemporary strains of Vibrio cholerae O1 isolated from cholera patients in Kolkata, India PLoS Neglected Tropical Diseases 10.1371/journal.pntd.0005386
Nidhi Jain, Neelam Oswal , Amanpreet Singh Chawla, Tanvi Agrawal, Moanaro Biswas, Sudhanshu Vrati, Satyajit Rath, Anna George, Vineeta Bal, Guruprasad, R. Medigeshi Feb, 2017 CD8 T cells protect adult naive mice from JEV-induced morbidity via lytic function PLoS Neglected Tropical Diseases 10.1371/journal.pntd.0005329
Amrita Ojha; Dipika Nandi; Harish Batra; Rashi Singhal; Gowtham K. Annarapu; Sankar Bhattacharyya; Tulika Seth; Lalit Dar; Guruprasad R. Medigeshi; Sudhanshu Vrati; Naval K. Vikram; Prasenjit Guchhait Jan, 2017 Platelet activation determines the severity of thrombocytopenia in dengue infection Scientific Reports 10.1038/srep41697
Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, Agnello M, Agostinis P, Aguilar PV, Aguirre-Ghiso J, Airoldi EM, Ait-Si-Ali S, Akemat Jan, 2017 Guidelines for the use and interpretation of assays for monitoring autophagy Autophagy 10.1080/15548627.2015.1100356
Kumar P; Medigeshi GR; Mishra VS; Islam M; Randev S; Mukherjee A; Chaudhry R; Kapil A; Ram Jat K; Lodha R; Kabra SK Jan, 2017 Etiology of acute respiratory infections in infants: A prospective birth cohort study Pediatric Infectious Disease Journal 10.1097/INF.0000000000001359
Anthwal D; Gupta RK; Bhatnagar S; Tyagi JS; Haldar S; Bhalla M March, 2017 Direct detection of Rifampicin and Isoniazid resistance in sputum samples from tuberculosis patients by High Resolution Melt curve analysis Journal of Clinical Microbiology 10.1128/JCM.02104-16
Minu Nain; Sriparna Mukherjee; Sonali Karmakar; JC Paton; AC Paton; MZ Abdin; Anirban Basu; Manjula Kalia; Sudhanshu Vrati Jan, 2017 GRP78 is an important host factor for Japanese encephalitis virus entry and replication in mammalian cells Journal of Virology 10.1128/JVI.02274-16
Gu G; Huang Y; Wu C; Guo Z; Awasthi A; He X Jan, 2017 Differential expression of long noncoding RNAs during cardiac allograft rejection Transplantation 10.1097/TP.0000000000001463
Gupta SS; Bharati K; Sur D; Khera A; Ganguly NK; Nair GB May, 2016 Why is the oral cholera vaccine not considered an option for prevention of cholera in India? Analysis of possible reasons. Indian J Med Res 10.4103/0971-5916.187102
Adewale AK; Pazhani GP; Abiodun IB; Afolabi O; Kolawole OD; Mukhopadhyay AK; Ramamurthy T August, 2016 Unique clones of Vibrio cholerae O1 El Tor with Haitian type ctxB allele implicated in the recent cholera epidemics from Nigeria, Africa PLoS One 10.1371/journal.pone.0159794
Jain N; Khullar B; Oswal N; Banoth B; Joshi P; Ravindran B; Panda S; Basak S; George A; Rath S; Bal V; Sopory S. June, 2016 TLR-mediated albuminuria needs TNF_-mediated cooperativity between TLRs present in hematopoietic tissues and CD80 present on non-hematopoietic tissues in mice Disease Model and Mechanisms 10.1242/dmm.023440.
Preeti Thakur; Nagavara Prasad; Gantasala; Eira Choudhary; Nirpendra Singh; Malik Zainul Abdin; Nisheeth Agarwal May, 2016 The preprotein translocase YidC controls respiratory metabolism in Mycobacterium tuberculosis Scientific Reports 10.1038/srep24998
Rosemarie Mason; Hugh Welles; Cameron Adams; Bimal K Chakrabarti; Jason Gorman; Tongqing Zhou; Richard Nguyen; Sijy O?Dell; Sabrina Lusvarghi; Carole Bewley; Peter Kwong; John Mascola; Mario Roederer April, 2016 Targeted isolation of antibodies directed against major sites of SIV Env vulnerability PLOS Pathogens 10.1371/journal.ppat.1005537
Eira Choudhary; Ajitesh Lunge; Nisheeth Agarwal May, 2016 Strategies of gene inactivation in mycobacteria: achievements and challenges. Tuberculosis 10.1016/j.tube.2016.03.005
Reddy BR; Maitra S; Jhelum P; Kumar KP; Bagul PK; Kaur G; Banerjee SK; Kumar A; Chakravarty S Sep, 2016 Sirtuin 1 and 7 mediate resveratrol-induced recovery from hyper-anxiety in high-fructose-fed prediabetic rats. Journal of Biosciences 10.1007/s12038-016-9627-8
Chowdhury G; Bhadra RK; Bag S; Pazhani GP; Das B; Basu P; Nagamani K; Nandy RK; Mukhopadhyay AK; Ramamurthy T Oct, 2016 Rugose atypical Vibrio cholerae O1 El Tor responsible for 2009 cholera outbreak in India Journal of Medical Microbiology 10.1099/jmm.0.000344
Dr. Sameena Khan April, 2016 Recent advances in the biology and drug targeting of malaria parasite aminoacyl-tRNA synthetases. Malaria Journal 10.1186/s12936-016-1247-0
Kanwal A; Kasetti S; Putcha UK; Asthana S; Banerjee SK Sep, 2016 Protein kinase C-mediated sodium glucose transporter 1 activation in precondition-induced cardioprotection. Drug Design, Development and Therapy 10.2147/DDDT.S105482
Raikamal Ghosh; Naresh C. Sharma; Kalpataru Halder; Rupak K. Bhadra; Goutam Chowdhury; Gururaja P. Pazhani; Sumio Shinoda; Asish K. Mukhopadhyay; G. Balakrish Nair; Thadavarayan Ramamurthy August, 2016 Phenotypic and genetic heterogeneity in Vibrio cholerae O139 isolated from cholera cases in Delhi, India during 2001-2006 Front Microbiol 10.3389/fmicb.2016.01250
Guruprasad R. Medigeshi; Rinki Kumar; Ekta Dhamija; Tanvi Agrawal; Meenakshi Kar Oct, 2016 N-Desmethylclozapine, Fluoxetine and Salmeterol inhibit post-entry stages of dengue virus life-cycle Antimicrobial Agents and Chemotherapy 10.1128/AAC.01367-16
Das B; Pazhani GP; Sarkar A; Mukhopadhyay AK; Nair GB; Ramamurthy T Oct, 2016 Molecular Evolution and Functional Divergence of Vibrio cholera Current Opinion on Infectious Diseases 10.1097/QCO.0000000000000306
Rosemarie Mason; Hugh Welles; Cameron Adams; Bimal K Chakrabarti; Jason Gorman; Tongqing Zhou; Richard Nguyen; Sijy O?Dell; Sabrina Lusvarghi; Carole Bewley; Peter Kwong; John Mascola; Mario Roederer Nov, 2016 Membrane bound modified form of clade B Env, JRCSF is suitable for immunogen design as it is efficiently cleaved and displays all the broadly neutralizing epitopes including V2 and C2 domain-dependent conformational epitopes. Retrovirology 10.1186/s12977-016-0312-7
Adela R; Borkar RM; Bhandi MM; Vishwakarma G; Srinivas R; Banerjee SK Nov, 2016 Lower vitamin D metabolites levels were associated with increased coronary artery diseases in Indian type 2 diabetes patients. Scientific Reports 10.1038/srep37593
Kanwal A; Nizami HL; Mallapudi S; Putcha UK; Mohan GK; Banerjee SK April, 2016 Inhibition of SGLT1 abrogates preconditioning-induced cardioprotection against ischemia-reperfusion injury Biochemical and Biophysical Research Communications 10.1016/j.bbrc.2016.02.016
Saumya Anang; Chandru Subramani; Vidya P. Nair; Sheetal Kaul; Nidhi Kaushik; Chandresh Sharma; Ashutosh Tiwari; CT Ranjith-Kumar; Milan Surjit April, 2016 Identification of critical residues in Hepatitis E virus macro domain involved in its interaction with viral methyltransferase and ORF3 proteins Scientific Reports 10.1038/srep25133
Rinki Kumar; Tanvi Agrawal; Naseem Ahmed Khan; Yuji Nakayama; Guruprasad R. Medigeshi July, 2016 Identification and characterization of the role of c-terminal Src kinase in dengue virus replication Scientific Reports 10.1038/srep30490
Despande S; Patil S; Kumar R; Hermanus T; Murugavel K.G; Solomon S; Morris L; Bhattacharya J August, 2016 HIV-1 clade C escapes broadly neutralizing autologous antibodies with N332 glycan specificity by distinct mechanisms. Retrovirology 10.1186/s12977-016-0297-2
Kaur G; R; Adela R; Putcha UK; Sweeya R; Reddy BR; Kumar PK; Chakravarty S; Banerjee SK Oct, 2016 Garlic and Resveratrol attenuate diabetic complications, loss of _-cells, pancreatic and hepatic oxidative stress in streptozotocin-induced diabetic rats. Front Pharmacol 10.3389/fphar.2016.00360
Sultana R; Bagul PK; Katare PB; Anwar S; Padiya R; Banerjee SK Nov, 2016 Garlic activates SIRT-3 to prevent cardiac oxidative stress and mitochondrial dysfunction in diabetes. Life Sciences 10.1016/j.lfs.2016.08.030
Rakonjac J; Das B; Derda R Dec, 2016 Filamentous Bacteriophage in Bio/Nano/Technology, Bacterial Pathogenesis and Ecology Front Microbiol 10.3389/fmicb.2016.02109
Niraj Kumar; Dixat Gopal Gupta; Srikant Kumar; Priyanka Maurya; Ashutosh Tiwari; Babu Mathew; Subham Banerjee; Sagarika Haldar; Jonathan Pillai; Shinjini Bhatnagar; Susmita Chaudhuri April, 2016 Exploring Packaged Microvesicle Proteome Composition of Chinese Hamster Ovary Secretome Journal of Biotechnology and Bioprocess Engineering 10.4172/2155-9821.1000274
Mamta Singh; Prabhakar Tiwari; Garima Arora; Sakshi Agarwal; Saqib Kidwai; Ramandeep Singh June, 2016 Establishing virulence associated Polyphosphate Kinase 2 as a drug target for Mycobacterium tuberculosis Scientific Reports 10.1038/srep26900
Vidya P. Nair; Saumya Anang; Chandru Subramani; Abhilasha Madhvi; Karishma Bakshi; Akriti Srivastava; Shalimar; Baibaswata Nayak; Ranjith Kumar CT; Milan Surjit April, 2016 Endoplasmic Reticulum Stress Induced Synthesis of a Novel Viral Factor Mediates Efficient Replication of Genotype-1 Hepatitis E Virus PLOS Pathogens 10.1371/journal.ppat.1005521
Adela R; Mohammed SA; Kanwal A; Vishwakarma G; Reddy PNC; Banerjee SK July, 2016 Elevated levels of GDF-15 is associated with increased angiotensin II in hypertensive patients with Type 2 diabetes. Personalized Medicine (Future Medicine) 10.2217/pme-2016-0030
Prabhakaran DM; Chowdhury G; Pazhani GP; Ramamurthy T; Thomas S April, 2016 Draft genome sequence of an environmental trh+ Vibrio parahaemolyticus K23 strain isolated from Kerala, India Genome Announcements 10.1128/genomeA.00282-16
Chihara N; Madi A; Karwacz K; Awasthi A; Kuchroo VK April, 2016 Differentiation and characterization of Tr1 cells Current Protocols in Immunology 10.1002/0471142735.im0327s113
Khalili H; Malik S; Ananthakrishnan A; Garber J; Higuchi L; Joshi A; Peloquin J; Richter J; Stewart K; Curhan G; Awasthi A; Yajnik V; Chan A Dec, 2016 Dietary Sodium and Potassium Intake, Immune Tolerance and Risk of Crohn's Disease and Ulcerative Colitis Front Immunol. 10.3389/fimmu.2016.00554
Ajay Kumar; Shilpa Jamwal; Mukul K Midha; Baseerat Hamza; Suruchi Aggarwal; Amit K Yadav; Kanury VS Rao Sep, 2016 Dataset generated using hyperplexing and click chemistry to monitor temporal dynamics of newly synthesized macrophage secretome post infection by mycobacterial strains Data in Brief
Prabhu SB; Rathore DK; Nair D; Chaudhary A; Raza S; Kanodia P; Sopory S; George A; Rath S; Bal V; Tripathi R; Ramji S; Batra A; Aggarwal KC; Chellani HK; Arya S; Agarwal N; Mehta U; Natchu UC; Wadhwa N; Bhatnagar S. Sep, 2016 Comparison of Human Neonatal and Adult Blood Leukocyte Subset Composition Phenotypes PLoS One 10.1371/journal.pone.0162242
Chandele A; Sewatanon J; Gunisetty S; Singla M; Onlamoon N; Akondy RS; Kissick HT; Nayak K; Reddy ES; Kalam H; Kumar D; Verma A; Panda H; Wang S; Angkasekwinai N; Pattanapanyasat K; Chokephaibulkit K; Medigeshi GR; Lodha R; Kabra S; Ahmed R; Murali-Krishn Nov, 2016 Characterization of human CD8 T Cell responses in dengue virus-infected patients from India Journal of Virology 10.1128/JVI.01424-16
Goutam Chowdhury; Gururaja Perumal Pazhani; Anirban Sarkar; Krishnan Rajendran; Asish K. Mukhopadhyay; Mihir K. Bhattacharya; Amit Ghosh; Thandavarayan Ramamurthy Oct, 2016 Carbapenem (NDM-1) resistance in clonally distinct cinical strains of Vibrio fluvialis isolated from diarrheal patients Emerging Infectious Diseases 10.3201/eid2210.151612
Meghwani H; Prabhakar P; Mohammed SA; Seth S; Hote MP; Banerjee SK; Arava S; Ray R; Maulik SK July, 2016 Beneficial effects of aqueous extract of stem bark of Terminalia arjuna (Roxb.), An ayurvedic drug in experimental pulmonary hypertension. Journal of Ethnopharmacology 10.1016/j.jep.2016.07.029
Deshpande S; Patil S; Kumar R; Shrivastava T; Srikrishnan AK; Murugavel KG; Koff WC; Chakrabarti BK; Bhattacharya J June, 2016 Association of mutations in V3/C3 domain with enhanced sensitivity of HIV-1 clade C primary envelopes to autologous broadly neutralizing plasma antibodies Retrovirology 10.1186/s12977-016-0273-x
Perez-Gamarra S; Hattara L; Batra G; Saviranta P; Lamminmaki U Dec, 2016 Array-in-well binding assay for multiparameter screening of phage displayed antibodies Methods 10.1016/j.ymeth.2016.12.004
Bag S; Saha B; Mehta O; Anbumani D; Kumar N; Dayal M; Pant A; Kumar P; Saxena S; Allin KH; Hansen T; Arumugam M; Vestergaard H; Pedersen O; Pereira V; Abraham P; Tripathi R; Wadhwa N; Bhatnagar S; Prakash VG; Radha V; Anjana RM; Mohan V; Takeda K; Kurakaw May, 2016 An Improved Method for High Quality Metagenomics DNA Extraction from Human and Environmental Samples Scientific Reports 10.1038/srep26775
Borkar RM; Bhandi MM; Dubey AP; Reddy VG; Komirishetty P; Nandekar PP; Sangamwar AT; Kamal A; Banerjee SK; Srinivas R Oct, 2016 An evaluation of the CYP2D6 and CYP3A4 inhibition potential of metoprolol metabolites and their contribution to drug?drug and drug?herb interaction by LC-ESI/MS/MS. Biomedical Chromatography 10.1002/bmc.3721
Anand R; Ravichandran S; Chatterjee S Nov, 2016 A new method of finding groups of coexpressed genes and condition of coexpression BMC Bioinformatics 10.1186/s12859-016-1356-3
Sachiyo Yoshida; Jos? Martines; Joy E. Lawn; Stephen Wall; Joao Paulo Souza; Igor Rudan; Simon Cousens; Peter Aaby; Ishag Adam; Ramesh Kant Adhikari; Namasivayam Ambalavanan; Shams E I Arifeen; Dhana Raj Aryal; S. K. Asiruddin; Abdullah Baqui; Aluisio J D June, 2016 Setting research priorities to improve global newborn health and prevent still births by 2025 J Glob Health 10.7189/jogh.06.010508
Negi B; Kumar D; Kumbukgolla W; Jayaweera S; Ponnan P; Singh R; Agarwal S; Rawat DS June, 2016 Antimethicillin resistant Staphylococcus aureus activity synergism with oxacillin and molecular docking studies of metronidazole-triazole derviatives European Journal Of Medicinal Chemistry 10.1016/j.ejmech.2016.03.041
Srijon Kaushik Banerjee; Manish Kumar; Reshma Alokam; Arun Kumar Sharma; Ayan Chatterjee; Ranjeet Kumar; Sanjaya Kumar Sahu; Kuladip Jana; Ramandeep Singh; Perumal Yogeeswari; Dharmarajan Sriram; Joyoti Basu; Manikuntala Kundu May, 2016 Targeting multiple response regulators of Mycobacterium tuberculosis auguments the host immune response to infection Scientific Reports 10.1038/srep25851
Tyagi R; Garg N; Dalai S; Awasthi A April, 2016 Transdermal immunization of P. falciparum surface antigen (MSP-119) via elastic liposomes confers robust immunogenicity Human Vaccine and Immunotherapeutics 10.1080/21645515.2015.1116656
D Kumar; AK Yadav; X Jia; J Mulvenna; D Dash Nov, 2016 D Dash - Integrated transcriptomic-proteomic analysis using a proteogenomic workflow refines rat genome annotation Molecular & Cellular Proteomics 10.1074/mcp.M114.047126
Das S, Integrase interactor 1 in health and disease. Curr Protein Pept Sci. 2015;16(6):478-90.
Rampal R; Awasthi A; Ahuja V March, 2016 Retinoic acid primed human dendritic cells promote gut-tropism, inhibit Th9 cells and induce Th1/Th17 cell differentiation Journal of Leukocyte Biology 10.1189/jlb.3VMA1015-476R
Minu Nain; M.Z. Abdin; Manjula Kalia; Sudhanshu Vrati March, 2016 Japanese encephalitis virus invasion of cell: allies and alleys Reviews in Medical Virology 10.1002/rmv.1868
Kumar Dhirendra; Amit Kumar Yadav; Xinying Jia; Jason Mulvenna; Debasis Dash Jan, 2016 Integrated Transcriptomic-Proteomic Analysis Using a Proteogenomic Workflow Refines Rat Genome Annotation Mol Cell Proteomics 10.1074/mcp.M114.047126
Tarak Nath Khatua; Amit K. Dinda; Uday K. Putchad; Sanjay K. Banerjee March, 2016 Diallyl disulfide ameliorates isoproterenol induced cardiac hypertrophy activating mitochondrial biogenesis via eNOS-Nrf2-Tfam pathway in rats. Biochemistry and Biophysics Reports 10.1016/j.bbrep.2015.11.008
N. K. Ganguly March, 2016 A vaccine Can Stop The Zika Virus Newspaper Article
Malik S; Muzamil Want; Awasthi A Jan, 2016 The Emerging Roles of Gamma-Delta T Cells in Tissue Inflammation in Experimental Autoimmune Encephalomyelitis. Front Immunol. 10.3389/fimmu.2016.00014
Synne Jenum; S. Dhanasekaran; Rakesh Lodha; Aparna Mukherjee; Deepak Kumar Saini; Sarman Singh; Varinder Singh; Guruprasad Medigeshi; Marielle C. Haks; Tom H. M. Ottenhoff; Timothy Mark Doherty; Sushil K. Kabra; Christian Ritz; Harleen M. S. Grewal Jan, 2016 Approaching a diagnostic point-of-care test for pediatric tuberculosis through evaluation of immune biomarkers across pediatric tuberculosis through evaluation of immune biomarkers across the clinical disease spectrum Scientific Reports 10.1038/srep18520
Sankhyan A; Sharma S; Dutta D; Chosdol K; Wakita T; Watashi K; Awasthi A; Acharya SK; Khanna N; Tiwari A; Sinha S Feb, 2016 Inhibition of preS1-hepatocyte interaction by an array of recombinant human antibodies from naturally recovered individuals Scientific Reports 10.1038/srep21240
Goutam Chowdhury; Sangeeta Joshi; Sanjay Bhattacharya; Uma Sekar; Balaji Birajdar; Arpita Bhattacharyya; Sumio Shinoda; Thandavarayan Ramamurthy Feb, 2016 Extraintestinal infections caused by non-toxigenic Vibrio cholerae non-O1/non-O139 Frontiers in Microbiology 10.3389/fmicb.2016.00144
Kaushik N; Rohila D; Arora U; Raut R; Lamminmaki U; Khanna N; Batra G Feb, 2016 Casamino acids facilitate the secretion of recombinant dengue virus serotype-3 envelope domain III in Pichia pastoris BMC Biotechnol 10.1186/s12896-016-0243-3
Pedruzzi G; Das PN; Rao K; Chatterjee S Jan, 2016 Understanding PGE2, LXA4 and LTB4 balance during Mycobacterium tuberculosis infection through mathematical model Journal of Theoretical Biology 10.1016/j.jtbi.2015.10.025
Patil S; Kumar R; Deshpande S; Samal S; Shrivastava T; Boliar S; Bansal M; Chaudhary NK; Srikrishnan AK; Murugavel KG; Solomon S; Simek M; Koff WC; Goyal R; Chakrabarti BK; Bhattacharya J Jan, 2016 Conformational Epitope-Specific Broadly Neutralizing Plasma Antibodies Obtained from an HIV-1 Clade C Infected Elite Neutralizer Mediate Autologous Virus Escape through Novel Mutations in V1 Loop Journal of Virology 10.1128/JVI.03090-15
Singla, M; Kar M; Sethi T; Kabra SK; Lodha R; Chandele A; Medigeshi GR March, 2016 Immune Response to Dengue Virus Infection in Pediatric Patients in New Delhi, India-Association of Viremia, Inflammatory Mediators and Monocytes with Disease Severity PLoS Neglected Tropical Diseases 10.1371/journal.pntd.0004497
Goswami S; Banerjee A; Kumari B; Bandopadhyay B; Bhattacharya N; Basu N; Vrati S; Arup Banerjee Feb, 2016 Differential expression and significance of circulating microRNAs in cerebrospinal fluid of acute encephalitis patients infected with Japanese Encephalitis Virus Molecular Neurobiology 10.1007/s12035-016-9764-y
Kumari B; Jain P; Das S; Ghosal S; Hazra B; Trivedi AC; Basu A; Chakrabarti J; Vrati S; Banerjee A Feb, 2016 Dynamic changes in global microRNAome and transcriptome reveal complex miRNA-mRNA regulated host response to Japanese Encephalitis Virus in microglial cells Scientific Reports 10.1038/srep20263
Pankaj K. Bagul; Sanjay K. Banerjee May, 2015 Application of resveratrol in diabetes: rationale, strategies and challenges Current Molecular Medicine 10.2174/1566524015666150505155702
Pankaj K. Bagul; Nancy Deepthi; Razia Sultana; Sanjay K. Banerjee Nov, 2015 Resveratrol ameliorates cardiac oxidative stress in diabetes through deacetylation of NFkB-p65 and histone 3 J Nutr Biochem 10.1016/j.jnutbio.2015.06.006
Dr. Pankaj K. Bagul; Amit Dinda; Dr. Sanjay Banerjee Dec, 2015 Effect of resveratrol on sirtuin expression and cardiac complications in diabetes Biochemical and Biophysical Research Communications 10.1016/j.bbrc.2015.10.126
N. K. Ganguly; Gautam Saha Nov, 2015 G-finder Survey Report 2015: Neglected Disease Research & development: The Ebola effect G-finder Survey Report 2015
Amrita Ojha; Dipika Nandi; Harish Batra; Rashi Singhal; Gowtham K. Annarapu; Sankar Bhattacharyya; Tulika Seth; Lalit Dar; Guruprasad R. Medigeshi; Sudhanshu Vrati; Naval K. Vikram; Prasenjit Guchhait Oct, 2015 Effect of LexA on chromosomal integration of CTX_ in Vibrio cholerae J Bacteriol. 10.1128/JB.00674-15
Anirban Sarkar; Gururaja P.Pazhani; Goutam Chowdhury; Amit Ghosh; Thandavarayan Ramamurthy Sep, 2015 Attributes of carbapenemase encoding conjugative plasmid pNDMSAL from an extensively drug-resistant Salmonella enterica Serovar Front Microbiol 10.3389/fmicb.2015.00969
T. Ramamurthy; G. Balakrish Nair; Marie-Laure Quilici Oct, 2015 Cholera surveillance, rapid diagnostics and laboratory networks Wkly Epidemiol Rec.
Diana M Ho; SK Pallavi; Spyros Artavanis-Tsakona July, 2015 The Notchmediated hyperplasia circuitry in Drosophila reveals a Src-JNK signaling axis elife 10.7554/eLife.05996
P Yadav; S Khalil; BR Mirdha; GK Makharia; S Bhatnagar July, 2015 Molecular characterization of clinical isolates of Cyclospora cayetanensis from patients with diarrhoea in India Indian J Med Microbiol 10.4103/0255-0857.158547
Susmita Chaudhuri; Priyanka Maurya; Manpreet Kaur; Ashutosh Tiwari; Nicole Borth; Shinjini Bhatnagar; Niraj Kumar July, 2015 Investigation of CHO Secretome: Potential Way to Improve Recombinant Protein Production from Bioprocess J Bioprocess Biotech 10.4172/2155-9821.1000240
Anshika Singhal; Gunjan Arora; Richa Virmani; Parijat Kundu; Tanya Khanna; Andaleeb Sajid; Richa Misra; Jayadev Joshi; Vikas Yadav; Sintu Samanta; Neeru Saini; Amit K. Pandey; Sandhya S. Visweswariah; Christian Hentschker; D?rte Becher; Ulf Gerth; Yogendr Oct, 2015 Systematic Analysis of Mycobacterial Acylation Reveals First Example of Acylation-mediated Regulation of Enzyme Activity of a Bacterial Phosphatase J Biol Chem 10.1074/jbc.M115.687269
Ema T. Crooks; Tommy Tong; Bimal Chakrabarti; Kristin Narayan; Ivelin S. Georgiev; Sergey Menis; Xiaoxing Huang; Daniel Kulp; Keiko Osawa; Janelle Muranaka; Guillaume Stewart-Jones; Joanne Destefano; Sijy O?Dell; Celia LaBranche; James E. Robinson; David May, 2015 Vaccine-Elicited Tier 2 HIV-1 Neutralizing Antibodies Bind to Quaternary Epitopes Involving Glycan-Deficient Patches Proximal to the CD4 Binding Site PLOS Pathogens 10.1371/journal.ppat.1004932
Khan L; Makhdoomi MA; Kumar S; Nair A; Andrabi R; Clark BE; Auyeung K; Bhattacharya J; Vajpayee M; Wig N; Pantophlet R; Luthra K May, 2015 Identification of CD4-binding site dependent plasma neutralizing antibodies in an HIV-1 infected Indian individual PLoS ONE 10.1371/journal.pone.0125575
Pavan Kumar Kakumani; K.S. Rajgokul; Sanket Singh Ponia; Inderjeet Kaur; Srikrishna Mahanty; Guruprasad R. Medigeshi; Akhil C. Banerjea; Arun Prasad Chopra; Pawan Malhotra; Sunil K. Mukherjee; Raj K. Bhatnagar Oct, 2015 Dengue NS3, an RNAi suppressor, modulates the human miRNA pathways through its interacting partner Biochem J. 10.1042/BJ20150445
Nimesh Gupta; M?lissanne de Wispelaere; Maxime Lecerf; Manjula Kalia; Tobias Scheel; Sudhanshu Vrati; Claudia Berek; Srinivas V. Kaveri; Philippe Despr?s; S?bastien Lacroix-Desmazes; Jordan D. Dimitrov Nov, 2015 Neutralization of Japanese Encephalitis Virus by heme-induced broadly reactive human monoclonal antibody Scientific Reports 10.1038/srep16248
Young-Goo Kang; Chan-Yong Park; Hongsuk Shin; Ramandeep Singh; Garima Arora; Chan-mo Yu; Ill Young Lee Sep, 2015 Synthesis and antitubercular activity of 2-nitroimidazooxazines with modification at the C-7 position as PA-824 analogs Bioorg Med Chem Lett. 10.1016/j.bmcl.2015.06.060
Sankar Bhattacharyya; Sudhanshu Vrati Dec, 2015 The Malat1 long non-coding RNA is upregulated by signalling through the PERK axis of unfolded protein response during flavivirus infection Scientific Reports 10.1038/srep17794
Shailendra Asthana; Paolo Zucca; Attilio V. Vargiu; Enrico Sanjust; Paolo Ruggerone; Antonio Rescigno August, 2015 Structure-Activity Relationship Study of Hydroxycoumarins and Mushroom Tyrosinase. Journal of Agricultural Food Chemistry 10.1021/acs.jafc.5b02636
Mehta J; Asthana S; Mandal CC; Saxena S March, 2015 A molecular analysis provides novel insights into androgen receptor signalling in breast cancer. PLoS ONE 10.1371/journal.pone.0120622
Tyagi RK; Garg NK; Jadon R; Sahu T; Karare OP; Awasthi A; Marepally SK August, 2015 Elastic liposome mediated transdermal immunization enhanced the immunogenicity of P. falciparum surface antigen, MSP-1 Vaccine 10.1016/j.vaccine.2015.06.054
Biswas S; Chatterjee S; Chattopadhyay J July, 2015 Cannibalism may control disease in predator population: Result drawn from a model based study Mathematical methods in the Applied Sciences 10.1002/mma.3220
Pedruzzi G; Rao K; Chatterjee S July, 2015 Mathematical model of mycobacterium-host interaction describes physiology of persistence Journal of Theoretical Biology 10.1016/j.jtbi.2015.03.031
Chatterjee S; Pessani D; Venturino E. May, 2015 Harvesting strategies for ?bianchetti? and ?blue fish? in the Ligurian Sea (North Mediterranean) Applied Mathematics & Information Sciences An International Journal 10.18576/amis/100305
Sharma TK; Ramanathan R; Rakwal R; Agrawal GK; Bansal V May, 2015 Moving forward in plant food safety and security through NanoBioSensors: Adopt or adapt biomedical technologies? Journal of Proteomics 10.1002/pmic.201400503
Sharma C; Sankhyan A; Sharma T; Khan N; Chaudhuri S; Kumar N; Bhatnagar S; Khanna N; Tiwari A May, 2015 A repertoire of high-affinity monoclonal antibodies specific to S. typhi: as potential candidate for improved typhoid diagnostic Journal of Immunological Research 10.1007/s12026-015-8663-z
Kulshreshtha P, Tiwari A, Priyanka, Joon S, Sinha S, Bhatnagar R. Dec, 2015 Investigation of a panel of monoclonal antibodies and polyclonal sera against anthrax toxins resulted in identification of an anti-lethal factor antibody with disease-enhancing characteristics Molecular Immunology 10.3390/toxins7061854
Singh P; Wadhwa N ; Lodha R; Sommerfelt H; Aneja S; Natchu UCM; Kabra SK; Bhatnagar S; Strand TA. April, 2015 Predictors of time till recovery in infants with probable serious bacterial infections PLoS ONE 10.1371/journal.pone.0124594
Rathore DK; Nair D; Raza S; Saini S; Singh R; Kumar A; Tripathi R; Ramji S; Batra A; Aggarwal KC; Chellani HK; Arya S; Bhatla N; Paul VK; Aggarwal R; Agarwal N; Mehta U; Sopory S; Natchu UCM; Bhatnagar S; Bal V; Rath S; Wadhwa N April, 2015 Underweight full-term Indian neonates show differences in umbilical cord blood leukocyte phenotype PLoS ONE 10.1371/journal.pone.0123589
Sarkar N; Panigrahi R; Pal A; Biswas A; Singh SP; Kar S; Bandopadhyay M; Das D; Saha D; Kanda T; Sugiyama M; Chakrabarti S; Banerjee A; Chakravarty R Oct, 2015 Expression of microRNA-155 correlates positively with the expression of Toll Like Receptor 7 and modulates Hepatitis B Virus via C/EBP-_ in Hepatocytes Journal of Viral Hepatitis 10.1111/jvh.12390
Singh V; Kaur C; Chaudhary VK; Rao K; Chatterjee S August, 2015 M. tuberculosis Secretory Protein ESAT-6 Induces Metabolic Flux Perturbations to Drive Foamy Macrophage Differentiation Scientific Reports 10.1038/srep12906
Negi R; Dewan P; Shah D; Das S; Bhatnagar S; Gupta P August, 2015 Oral zinc supplements are ineffective for treating acute dehydrating diarrhoea in 5-12-year-olds Acta Paediatricia 10.1111/apa.12645
Das PN; Pedruzzi G; Bairagi N; Chatterjee S Dec, 2015 Coupling calcium dynamics and mitochondrial bioenergetic: an in silico study to simulate cardiomyocyte dysfunction Molecular Biosystems 10.1039/C5MB00872G
Khandelwal D; Gupta N; Mukherjee A; Lodha R; Singh V; Grewal HM; Bhatnagar S; Singh S; Kabra SK October 2014 Vitamin D levels in Indian children with intrathoracic tuberculosis Indian J Med Res NA
Mukherjee A; Saini S; Kabra SK; Gupta N; Singh V; Singh S; Bhatnagar S; Saini D; Grewal HM; Lodha R January 2014 Effect of micronutrient deficiency on QuantiFERON-TB Gold In-Tube test and tuberculin skin test in diagnosis of childhood intrathoracic tuberculosis Eur J Clin Nutr. 10.1038/ejcn.2013.216
Lodha R; Shah N; Mohari N; Mukherjee A; Vajpayee M; Singh R; Singla M; Saini S; Bhatnagar S; Kabra S. August 2014 Immunologic effect of zinc supplementation in HIV infected children receiving highly active antiretroviral therapy A randomized double blind placebo controlled trial J Acquir Immune Defic Syndr 10.1097/QAI.0000000000000191
Prasad K; Sharma A; Garg A; Mohanty S; Bhatnagar S; Johri S; Singh KK; Nair V; Sarkar RS; Gorthi SP; Hassan KM; Prabhakar S; Marwaha N; Khandelwal N; Misra UK; Kalita J; Nityanand S December 2014 Intravenous autologous bone marrow mononuclear stem cell therapy for ischemic stroke a multicentric randomized trial Stroke 10.1161/STROKEAHA.114.007028
Lodha R; Mukherjee A; Singh V; Singh S; Friis H; Faurholt-Jepsen D; Bhatnagar S; Saini S; Kabra SK; Grewal HM November 2014 Effect of micronutrient supplementation on treatment outcomes in children with intrathoracic tuberculosis a randomized controlled trial Am J Clin Nutr 10.3945/ajcn.113.082255
Singh P; Wadhwa N; Chaturvedi MK; Bhatia V; Saini S; Tandon N; Makharia GK; Maki M; Not T; Phillips A; Bhatnagar S. June 2014 Validation of point-of-care testing for coeliac disease in children in a tertiary hospital in north India Arch Dis Child 10.1136/archdischild-2013-305567
Bothra M; Bhatnagar S. February 2015 Probiotics in pediatrics Indian J Pediatr 10.1007/s12098-015-1719-1
Sandhya Bansal; Manish Singh; Saqib Kidwai; Priyanshu Bhargava; Ashima Singh; Vedagopuram Sreekanth; Ramandeep Singh; Avinash Bajaj Sep, 2014 Bile acid amphiphiles with tunable head groups as highly selective anti-tubercular agents Royal Society of Chemistry: Medicinal Chemistry Communication 10.1039/C4MD00303A
P. Naveen Chander Reddy; Dr. Ramu Adela; Dr. Sanjay Banerjee Jan, 2015 Alteration of plasma GDF-11 levels in type 2 diabetes patients with cardiovascular complications: A pilot study Journal of the practice of cardiovascular sciences 10.4103/2395-5414.177246
Yamasaki E; Yamada C; Jin X; Nair GB; Kurazono H; Yamamoto S Feb, 2015 Expression of marA is remarkably increased from the early stage of development of fluoroquinolone-resistance in uropathogenic Escherichia coli Journal of Infection and Chemotherapy 10.1016/j.jiac.2014.10.007
Hajela N; Ramakrishna BS; Nair GB; Abraham P; Gopalan S; Ganguly NK March, 2015 Gut microbiome, gut function, and probiotics: Implications for health Indian Journal of Gastroenterology 10.1007/s12664-015-0547-6
Tiwari P; Arora G; Singh M; Kidwai S; Narayan O; Singh R Jan, 2015 MazF ribonucleases promote Mycobacterium tuberculosis drug tolerance and virulence in guinea pigs Nature Communications 10.1038/ncomms 7059
Choudhary E; Thakur P; Pareek M; Agarwal N Feb, 2015 Gene silencing by CRISPR interference in mycobacteria Nature Communications 10.1038/ncomms7267
Boliar S; Das S; Bansal M; Shukla BN; Patil S; Shrivastava T; Samal S; Goswami S; King CR; Bhattacharya J; Chakrabarti BK March, 2015 An efficiently cleaved HIV-1 clade C Env selectively binds to neutralizing antibodies PLoS ONE 10.1371/journal.pone.0122443
Appaiahgari MB, Vrati S. March, 2015 Adenoviruses as gene/vaccine delivery vectors: promises and pitfalls Expert Opinion on Biological Therapy 10.1517/14712598.2015.993374
Sharma D; Priyadarshini P; Vrati S. Nov, 2014 Unravelling the web of viroinformatics: computational tools and databases in viral research Journal of Virology 10.1128/JVI.02027-14
Kumar D; Khare G; Beena; Kidwai S; Tyagi AK; Singh R; Rawat DS Sep, 2014 Novel isoniazid-amidoether derivatives: synthesis, characterization and antimycobacterial activity evaluation Royal Society of Chemistry: Medicinal Chemistry Communication 10.1039/C4MD00288A
Lopez AL; Gonzales ML; Aldaba JG; Nair GB June, 2014 Killed oral cholera vaccines: history, development and implementation challenges Ther Adv Vaccines 10.1177/2051013614537819
Kim EJ; Lee D; Moon SH; Lee CH; Kim SJ; Lee JH; Kim JO; Song M; Das B; Clemens J; Pape JW; Nair GB; Kim DW Sep, 2014 Molecular insights into the evolutionary pathway of Vibrio cholerae O1 atypical El Tor variants PLOS Pathogens 10.1371/journal.ppat.1004384
Kanungo S; Sen B; Ramamurthy T; Sur D; Manna B; Pazhani GP; Chowdhury G; Jhunjhunwala P; Nandy RK; Koley H; Bhattacharya MK; Gupta S; Goel G; Dey B; M T; Nair GB; Ghosh A; Mahalanabis D July, 2014 Safety and immunogenicity of a live oral recombinant cholera vaccine VA1.4: a randomized, placebo controlled trial in healthy adults in a cholera endemic area in Kolkata, India PLoS ONE 10.1371/journal.pone.0099381
Kanungo S; Lopez AL; Ali M; Manna B; Kim DR; Mahapatra T; Holmgren J; Dhingra MS; Weirzba TF; Nair GB; Bhattacharya SK; Clemens JD; Sur D. May, 2014 Vibriocidal antibody responses to a bivalent killed whole-cell oral cholera vaccine in a phase III trial in Kolkata, India PLoS ONE 10.1371/journal.pone.0096499
Das B; Kumari R; Pant A; Sen Gupta S; Saxena S; Nair GB. Sep, 2014 A Novel, Broad-Range, CTX_ -Derived Stable Integrative Expression Vector For Functional Studies Journal of Bacteriology 10.1128 /JB.01966-14
B. Das Nov, 2014 Mechanistic insights into filamentous phage integration in Vibrio cholerae Frontiers in Microbiology DOI: 10.3389/fmicb.2014.00650.
Mehrotra P, Jamwal S, Saquib N Md, Sinha N, Siddiqui Z, Manivel V, Chatterjee S, Rao KVS. July, 2014 Pathogenicity of Mycobacterium tuberculosis is expressed by regulating metabolic thresholds of the host macrophage PLOS Pathogens 10.1371/journal. ppat.1004265.
Sinha N; Negi S; Tikoo K; Sharma S; Tripathi P; Kumar D; Rao KVS; Chatterjee S August, 2014 Molecular signatures for obesity and associated disorders identified through partial least square regression models BMC Systems Biology 10.1186/s12918-014-0104-4
Bratati Mukhopadhyay; Nirmal Kumar Ganguly Dec, 2014 The Unexplored Role of Probiotics on the Parasitic Pathogens Food and Nutrition Sciences 10.4236/fns.2014.522230
Nirmal K. Ganguly; Simon Croft; Lalji Singh; Subrata Sinha; Tanjore Balganesh April, 2014 Biomedicine and biotechnology: public health impact BioMed Research International 10.1155/2014/524785
Pabudi Weerathunge; Rajesh Ramanathan; Ravi Shukla; Tarun Kumar Sharma; Vipul Bansal Oct, 2014 Aptamer-controlled reversible inhibition of gold nanozyme activity for pesticide sensing Analytical Chemistry 10.1021/ac5028726
Tarun Kumar Sharma; Rajesh Ramanathan; Pabudi Weerathunge; Mahsa Mohammadtaheri; Hemant Kumar Daima; Ravi Shukla; Vipul Bansal Oct, 2014 Aptamer-mediated ?turn-off/turn-on? nanozyme activity of gold nanoparticles for kanamycin detection Chemical Communications 10.1039/C4CC07275H
Aradhana Chopra; Ravi Shukla; Tarun Kumar Sharma July, 2014 Aptamers as an emerging player in Biology Smithand Franklin: Aptamers and Synthetic Antibodies
Shilpa Patil; Ipsita Choudhary; Nakul K. Chaudhary; Rajesh Ringe; Manish Bansal; Brihaspati Narayan Shukla; Saikat Boliar; Bimal K. Chakrabarti; Jayanta Bhattacharya July, 2014 Determinants in V2C2 region of HIV-1 clade C primary envelopes conferred altered neutralization susceptibilities to IgGb12 and PG9 monoclonal antibodies in a context-dependent manner Virology 10.1016/j.virol.2014.06.018
Deepak Kumar; Beena; Garima Khare; Saqib Kidwai; Anil K. Tyagi; Ramandeep Singh; Diwan S. Rawat June, 2014 Synthesis of 1, 2, 3 triazole derivatives of isoniazid and their in vitro and in vivo anti-mycobacterial activity evaluation European Journal Of Medicinal Chemistry 10.1016/j.ejmech.2014.05.005
Meetu Gupta; Andaleeb Sajid; Kirti Sharma; Soumitra Ghosh; Gunjan Arora; Ramandeep Singh; Valakunja Nagaraja; Vibha Tandon; Yogendra Singh July, 2014 HupB, a nucleoid associated protein of Mycobacterium tuberculosis is modified by Serine/Threonine protein kinases in vivo Journal of Bacteriology 10.1128/JB.01625-14
Deepika Bhullar; Richa Jalodia; Manjula Kalia; Sudhanshu Vrati Dec, 2014 Cytoplasmic translocation of Polypyrimidine Tract-Binding Protein and Its Binding to Viral RNA during Japanese Encephalitis Virus Infection Inhibits Virus Replication PLoS ONE 10.1371/journal.pone.0114931
Nita Bhandari; Temsunaro Rongsen-Chandola; Ashish Bavdekar; Jacob John; Kalpana Antony; Sunita Taneja; Nidhi Goyal; Anand Kawade; Prof Gagandeep Kang; Sudeep Singh Rathore; Sanjay Juvekar; Prof Jayaprakash Muliyil; Alok Arya; Hanif Shaikh; Vinod Abraham; August, 2014 Efficacy of a monovalent human-bovine 116E rotavirus vaccine in Indian children in the second year of life Vaccine 10.1016/j.vaccine.2014.04.079
Arora G; Tiwari P; Mandal RS; Gupta A; Sharma D; Saha S; Singh R Sep, 2014 High through put screen identifies small molecule inhibitors specific for Mycobacterium tuberculosis phosphoserine phosphatase Journal of Biological Chemistry 10.1074/jbc.M114.597682
Gunjan Arora; Andaleeb Sajid; Anshika Singhal; Jayadev Joshi; Richa Virmani; Meetu Gupta; Nupur Verma; Abhijit Maji; Richa Misra; Gre?gory Baronian; Amit K. Pandey; Virginie Molle; Yogendra Singh Nov, 2014 Identification of Ser/Thr kinase and Forkhead Associated Domains in Mycobacterium ulcerans: Characterization of Novel Association between Protein Kinase Q and MupFHA PLoS Neglected Tropical Diseases 10.1371/journal.pntd.0003315
Satyabrata Bag; Bhabatosh Das; Shreya Dasgupta; Rupak K. Bhadra May, 2014 Mutational analysis of the (p)pp Gpp synthetase activity of the Rel enzyme of Mycobacterium tuberculosis Archives of Microbiology 10.1007/s00203-014-0996-9
Tarini Shankar Ghosh; Sourav Sen Gupta; Tanudeep Bhattacharya; Deepak Yadav; Anamitra Barik; Abhijit Chowdhury; Bhabatosh Das; Sharmila S. Mande; G. Balakrish Nair April, 2014 Gut microbiomes of Indian children of varying nutritional status PLoS ONE 10.1371/journal.pone.0095547
Rachana Banerjee; Bhabatosh Das; G. Balakrish Nair; Surajit Basak April, 2014 Dynamics in genome evolution of Vibrio cholerae Infection Genetics And Evolution 10.1016/j.meegid.2014.01.006
Yuen-Yi Tseng; Branden S. Moriarity; Wuming Gong; Ryutaro Akiyama; Ashutosh Tiwari; Hiroko Kawakami; Peter Ronning; Brian Reuland; Kacey Guenther; Thomas C. Beadnell; Jaclyn Essig; George M. Otto; M. Gerard O?Sullivan; David A. Largaespada; Kathryn L. Sch August, 2014 PVT1-Dependence in Cancer with MYC Copy Number Increase Nature 10.1038/nature13311
Xia Jiang; Tatsuo Kanda; Shuang Wu; Masato Nakamura; Tatsuo Miyamura; Shingo Nakamoto; Arup Banerjee; Osamu Yokosuka June, 2014 Regulation of miRNA by HBV infection and their possible association with control of innate immunity World Journal of Gastroenterology 10.3748/wjg.v20.i23.7197
Nita Bhandari; Temsunaro Rongsen-Chandola; Ashish Bavdekar; Jacob John; Kalpana Antony; Sunita Taneja; Nidhi Goyal; Anand Kawade; Prof Gagandeep Kang; Sudeep Singh Rathore; Sanjay Juvekar; Prof Jayaprakash Muliyil; Alok Arya; Hanif Shaikh; Vinod Abraham; June, 2014 Efficacy of a monovalent human-bovine 116E rotavirus vaccine in Indian infants: a randomised, double-blind, placebo-controlled trial Lancet 10.1016/S0140-6736(13)62630-6
Sharma M; Bhattacharyya S; Nain M; Kaur M; Sood V; Gupta V; Khasa R; Abdin MZ; Vrati S; Kalia M July, 2014 Japanese Encephalitis Virus replication is negatively regulated by autophagy and occurson LC3-I and EDEM 1 containing membranes Autophagy 10.4161/auto.29455
Siddhika Pareek; Saugata Roy; Bharti Kumari; Pratistha Jain; Arup Banerjee; Sudhanshu Vrati May, 2014 miR-155 induction in microglial cells suppresses Japanese Encephalitis Virus replication and negatively modulates innate immuneresponses Journal of Neuroinflammation 10.1186/1742-2094-11-97
Rituparna De; Jayeeta Banerjee Ghosh; Sourav Sen Gupta; Yoshifumi Takeda; G. Balakrish Nair Oct, 2013 The role of Vibrio choleraegenotyping in Africa Journal of Infectious Diseases 10.1093/infdis/jit199
Nimesh Gupta; Pushpa Hegde; Maxime Lecerf; Minu Nain; Manpreet Kaur; Manjula Kalia; Sudhanshu Vrati; Jagadeesh Bayry; S?bastien Lacroix-Desmazes; Srini V. Kaveri March, 2014 Japanese encephalitis virus expands regulatory T cells by increasing the expression of PD-L1on dendritic cells European Journal of Immunology 10.1002/eji.201343701
Bhabatosh Das; G Balakrish Nair; Rupak K Bhadra Jan, 2014 Acquisition and dissemination mechanisms of CTX_ in Vibrio cholerae: New paradigm for diff residents World Journal Of Medical Genetics 10.5496/wjmg.v4.i2.27
TK Sharma; R. Shukla March, 2014 Nanoscience and aptamer technology for point of care diagnostics Symbiosis
V Tak; BR Mirdha; P Yadav; P Vyas; GK Makharia; S Bhatnagar Jan, 2014 Molecular characterisation of Giardia intestinalis assemblages from human isolates at a tertiary care centre of India Indian Journal of Medical Research 10.4103/0255-0857.124290
Sarala Malla; Shyam Prakash Dumre; Geeta Shakya; Palpasa Kansakar; Bhupraj Rai; Anowar Hossain; Gopinath Balakrish Nair; M John Albert; David Sack; Stephen Baker; Motiur Rahman March, 2014 The challenges and successes of implementing a sustainable antimicrobial resistance surveillance programme in Nepal BMC Public Health 10.1186/1471-2458-14-269
Shantanu K. Kar; Binod Sah; Bikash Patnaik; Yang Hee Kim; Anna S. Kerketta; Sunheang Shin; Shyam Bandhu Rath; Mohammad Ali; Vittal Mogasale; Hemant K. Khuntia; Anuj Bhattachan; Young Ae You; Mahesh K. Puri; Anna Lena Lopez; Brian Maskery; Gopinath B. Nair Feb, 2014 Mass vaccination with a new, less expensive oral cholera vaccine using public health infrastructure in India: the odisha model PLoS Neglected Tropical Diseases 10.1371/journal.pntd.0002629
Neerja Hajela; G. Balakrish Nair; B.S. Ramakrishna; N.K. Ganguly Jan, 2014 Probiotic foods: Can their increasing use in India ameliorate the burden of chronic lifestyle disorders? Indian Journal of Medical Research
Eira Choudhary; William Bishai; Nisheeth Agarwal Feb, 2014 Expression of a subset of heat stress induced genes of Mycobacterium tuberculosis is regulated by 3?,5?-cyclic AMP PLoS ONE 10.1371/journal.pone.0089759
Barman S, Koley H, Nag D, Shinoda S, Nair GB, Takeda Y. Nov, 2013 Passive immunity with multi-serotype heat-killed Shigellae in neonatal mice Microbiology and Immunology 10.1111/1348-0421.12164
TK Sharma; R. Shukla Dec, 2013 Nucleic acid aptamers as an emerging diagnostic tool for animal pathogens Advances in Animal and Veterinary Science 10.14737/journal.aavs/2014.2.1.50.55
Sankar Bhattacharyya; Utsav Sen; Sudhanshu Vrati Oct, 2013 Regulated IRE 1-dependent decay pathway is activated during Japanese encephalitis virus-induced unfolded protein response and benefits viral replication Journal Of General Virology 10.1099/vir.0.057265-0
Mohan Babu Appaiahgari; Roger Glass; Shakti Singh; Sunita Taneja; Temsunaro Rongsen-Chandola; Nita Bhandari; Sukhdev Mishra; Sudhanshu Vrati Dec, 2013 Transplacental rotavirus IgG interferes with immune response to live oral rotavirus vaccine ORV -116E in Indian infants Vaccine 10.1016/j.vaccine.2013.12.017
Dr. Mouli Natchu; Dr. Shinjini Bhatanagar July, 2013 Diarrhoea in children: identifying the cause and burden Lancet 10.1016/S0140-6736(13)60941-1
Ramandeep Singh; Mamta Singh; Garima Arora; Santosh Kumar; Prabhakar Tiwari; Saqib Kidwai June, 2013 Polyphosphate deficiency in mycobacterium tuberculosis is associated with enhanced drug susceptibility and impaired growth in guinea pigs Journal of Bacteriology 10.1128/JB.00038-13
Nitin Kumar; Ekta Kapoor; Ramandeep Singh; Saqib Kidwai; Widurana Kumbukgolla; Sunita Bhagat; Diwan S. Rawat Sep, 2013 Synthesis and antibacterial/antitubercular activity evaluation of symmetrical trans-cyclohexane-1,4-diamine derivatives Indian Journal of medicinal chemistry 10.1002/chin.201412062
Tarini Shankar Ghosh; Sourav Sen Gupta; Gopinath Balakrish Nair; Sharmila S. Mande Dec, 2013 In-silico analysis of antibiotic resistance genes in the gut microflora of individuals from diverse geographies and age-groups PLoS ONE 10.1371/journal.pone.0083823
Eiki Yamasaki; Ryuta Sakamoto; Takashi Matsumoto; Fumiki Morimatsu; Takayuki Kurazono; Toyoko Hiroi; G. Balakrish Nair; Hisao Kurazono Oct, 2013 Development of an immunochromatographic test strip for detection of cholera toxin BioMed Research International 10.1155/2013/679038
Soumik Barman; Hemanta Koley; Thandavarayan Ramamurthy; Manoj Kumar Chakrabarti; Sumio Shinoda; Gopinath Balakrish Nair; Yoshifumi Takeda Nov, 2013 Protective immunity by oral immunization with heat-killed Shigella strains in a guinea pig colitis model Microbiology and Immunology 10.1111/1348-0421.12095
Myo Thura Zaw; Eiki Yamasaki; Shingo Yamamoto; Keiko Kawamoto; Hisao Kurazono; GB Nair June, 2013 Uropathogenic specific protein gene, highly distributed in extraintestinal uropathogenic Escherichia coli, encodes a new member of H-N-H nuclease superfamily Gut Pathogens 10.1186/1757-4749-5-13
Kakumani PK; Ponia SS; Rakgokul KS; Sood V; Chinnappan M; Banerjea AC; Medigeshi GR; Malhotra P; Mukherjee SK; Bhatnagar RK June, 2013 Role of RNA Interference (RNA i) in Dengue Virus Replication and Identification of NS4B as an RNA i Suppressor Journal of Virology 10.1128/JVI.02774-12
Tanvi Agrawal; Peter Schu; Guruprasad R. Medigeshi May, 2013 Adaptor protein complexes-1 and 3 are involved at distinct stages of lavivirus life-cycle Scientific Reports 10.1038/srep01813
Tanvi Agrawal; Vats Sharvani; Deepa Nair; Guruprasad R. Medigeshi July, 2013 Japanese Encephalitis Virus Disrupts Cell-Cell Junctions and affects the Epithelial Permeability Barrier Functions PLoS ONE 10.1371/journal.pone.0069465
Nitya Wadhwa; Aruna Chandran; Satinder Aneja; Rakesh Lodha; Sushil K Kabra; Mona K Chaturvedi; Jitender Sodhi; Sean P Fitzwater; Jagdish Chandra; Bimbadhar Rath; Udaypal S Kainth; Savita Saini; Robert E Black; Mathuram Santosham; Shinjini Bhatnagar May, 2013 Efficacy of zinc givenas an adjunct in the treatment of severe and very severe pneumonia in hospitalized children 2-24 mo of age: a randomize double-blind, placebo-controlled trial American Journal of Clinical Nutrition 10.3945/_ajcn.112.052951
Octavia S; Salim A; Kurniawan J; Lam C; Leung Q; Ahsan S; Reeves PR; Nair GB; Lan R. June, 2013 Population structure and evolution of non-01/non-0139 Vibrio cholerae by multilocus sequence typing PLoS ONE 10.1371/journal.pone.0065342
Shalini Dwivedi; Bimal K. Das; Satinder Aneja; Suvasini Sharma; Mona K. Chaturvedi; Geoff Kahn; Sean P. Fitzwater; Aruna Chandran; Nitya Wadhwa; Shinjini Bhatnagar July, 2013 Group B Streptococcal Meningitis in Infants Beyond the Neonatal Period Indian Journal Of Pediatrics 10.1007/s12098-013-1157-x
Sanjukta Sen Gupta; G. Balakrish Nair; Narendra Kumar Arora; Nirmal Kumar Ganguly April, 2013 Vaccine development and deployment:Opportunities and challenges in India Vaccine 10.1016/j.vaccine.2012.11.079
Takashi Kurakawa; Hiroyuki Kubota; Hirokazu Tsuji; Kazunori Matsuda; Takuya Takahashi; Thandavarayan Ramamurthy; G. Balakrish Nair; Yoshifumi Takeda; Koji Nomoto Feb, 2013 Intestinal Enterobacteriaceae and Escherichia coli populations in Japanese adults demonstrated by th reverse transcription-quantitative PCR and the done library analyses Journal of Microbiological Methods 10.1016/j.mimet.2012.12.008
Sanjucta Dutta; Sucharita Guin; Santanu Ghosh; Gururaja P. Pazhani; Krishnan Rajendran; Mihir K. Bhattacharya; Yoshifumi Takeda; G. Balakrish Nair; Thandavarayan Ramamurthy Feb, 2013 Trends in the Prevalence of Diarrheagenic Escherichia coli among Hospitalized Diarrheal Patients in Kolkata,India PLoS ONE 10.1371/journal.pone.0056068
Manjula Kalia; Renu Khasa; Manish Sharma; Minu Nain; Sudhanshu Vrati Jan, 2013 Japanese encephalitis virus infects neuronal cells through a clathrin independent endocytic mechanism Journal of Virology 10.1128/JVI.01399-12
V. Haridas; Kullampalayam Shanmugam Rajgokul; Sandhya Sadanandan; Tanvi Agrawal; Vats Sharvani; M. V. S. Gopalakrishna; M. B. Bijesh; Kanhaiya Lal Kumawat; Anirban Basu; Guruprasad R. Medigeshi Jan, 2013 Bispidine-amino acid conjugates act as a novel scaffold for the design of antivirals that block Japanese encephalitis virus replication PLoS neglected tropical diseases 10.1371/journal.pntd.0002005
T. R. Chandola; S. Taneja; N. Goyal; S. S. Rathore; M. B. Appaiahgari; A.Mishra; S. Singh; S. Vrati; N. Bhandari Jan, 2013 Descriptive epidemiology of rotavirus infection in a community in North India Epidemiology and Infection 10.1017/S0950268812002762
Beena, Seema Joshi; Nitin Kumar; Saqib Kidwai; Ramandeep Singh; Diwan S. Rawat Nov, 2012 Synthesis and antitubercular activity evaluation of novel unsymmetrical cyclohexane-1,2-diamine derivatives Archiv der Pharmazie 10.1002/ardp.201200219
Christer Larsson; Brian Luna; Nicole C. Ammerman; Mamoudou Maiga; William R. Bishai July, 2012 Gene expression of Mycobacterium tuberculosis putative transcription factors whiB1-7 in redox environments PLoS ONE 10.1371/journal.pone.0037516
R. Sreejith; Jyoti Rana; Namrata Dudha; Kapila Kumar; Reema Gabrani; Sanjeev K. Sharma; Amita Gupta; Sudhanshu Vrati; Vijay K. Chaudhary; Sanjay Gupta Oct, 2012 Mapping interactions of Chikungunya virus nonstructural proteins Virus Research 10.1016/j.virusres.2012.08.006
Uma Chandra Mouli Natchu; Enju Liu; Christopher Duggan; Gernard Msamanga; Karen Peterson; Said Aboud; Donna Spiegelman; Wafaie W Fawzi Nov, 2012 Exclusive breastfeeding reduces risk of mortality in infants up to 6 mo ofage born to HIV--positive Tanzanian women American Journal of Clinical Nutrition 10.3945/_ajcn.111.024356
Sanjay Gupta; Namrata Dudha; Mohan Babu Appaiahgari; Kaushik Bharati; Dinesh Gupta; Yask Gupta; Kapila Kumar; Reema Gabrani; Sanjeev K. Sharma; Amita Gupta; Vijay K. Chaudhary; Sudhanshu Vrati August, 2012 Molecular cloning and characterization of Chikungunya virus genes from Indian isolate of 2006 outbreak Journal of Pharmacy Research
Bhatnagar S; Wadhwa N; Aneja S; Lodha R; Kabra SK; Natchu UC; Sommerfelt H; Dutta AK; Chandra J; Rath B; Sharma M; Sharma VK; Kumari M; Strand TA June, 2012 Zinc as adjunct treatment in infants aged between 7 and 120 days with probable serious bacterial infection: a randomised, double-blind, placebo_ controlled trial Lancet 10.1016/S0140-6736(12)60477-2
Appaiahgari MB; Vrati S July, 2012 Clinical development of iMOJE -a recombinant Japanese encephalitis vaccine (JE-CV) Expert Opinion on Biological Therapy 10.1517/14712598.2012.704908
Agarwal N; Pareek M; Thakur P; Pathak V April, 2012 Functional characterization of EngA.MS,a P-loop GTPase of Mycobacterium smegmatis PLoS ONE 10.1371/journal.pone.0034571
Kuchroo VK; Awasthi A Sep, 2012 Emerging new roles of Th17 cells European Journal of Immunology 10.1002/eji.201242872
Hajela N; Nair GB; Abraham P; Ganguly NK March, 2012 Health impact of probiotics-vision and opportunities Gut Pathogens 10.1186/1757-4749-4-1
Anantpadma M; Vrati S Feb, 2012 siRNA mediated suppression of Japanese encephalitis virus replication in cultured cells and mice Journal of antimicrobial therapy 10.1093/jac/dkr487
Medigeshi GR Sep, 2011 Mosquito-borne flaviviruses: overview of viral life-cycle and hostvirus interactions Future Virology 10.2217/fvl.11.85
Kaushik B; Vrati S Nov, 2011 Viral vaccines in India: An overview Proceedings of the National Academy of Sciences India Sect B. Biol. Sci. 10.1007/s40011-011-0014-9
VashistSBhullarDVratiS Feb2011 LaProteinCanSimultaneouslyBindtoBoth3-and5-NoncodingRegionsofJapaneseEncephalitisVirusGenome DNAandCellBiology 10.1089/dna.2010.1114
KN Beesabathuni; UCM Natchu August, 2010 Production and Distribution of a Therapeutic Nutritional Product for Severe Acute Malnutrition in India: Opportunities and Challenges Indian Journal Of Pediatrics NA
Appaiahgari MB; Vrati S Dec, 2010 IMOJEV? : a Yellow Fever virus-based novel Japanese encephalitis vaccine Vaccine 10.1586/erv.10.139
Anantpadma M; Stein DA; Vrati S March, 2010 Inhibition of Japanese encephalitis virus replication in cultured cells and mice by a peptideconjugated morpholino oligomer Journal of Antimicrobial Chemotherapy 10.1093/jac/dkq074
Appaiahgari MB; Abdin MZ; Bansal KC; Vrati S 2009 Expression of Japanese encephalitis virus envelope protein intransgenic tobacco plants Journal of Virological Method 10.1016/j.jviromet.2009.07.002
- Gupta I
- Aggarwal S
- Singh K
- Yadav A
- Khan S
Ubiquitin Proteasome pathway proteins as potential drug targets in parasite Trypanosoma cruzi
- Tripathi N
- Singh P
- Luxami V
- Mahajan D
- Kumar S
Spermine detection from urine and blood serum using ionic self-assembly of benzimidazolium based dipod and dodecylsulfate