Publication

 A draft map of human proteome. Kim MS, Pinto SM, Getnet D, Nirujogi RS, Manda SS, Chaerkady R, Madugundu AK, Kelkar DS, Isserlin R, Jain S, Thomas JK, Muthusamy B, Leal-Rojas P, Kumar P, Sahasrabuddhe NA, Balakrishnan L, Advani J, George B, Renuse S, Selvan LD, Patil AH, Nanjappa V, Radhakrishnan A, Prasad S, Subbannayya T, Raju R, Kumar M, Sreenivasamurthy SK, Marimuthu A, Sathe GJ, Chavan S, Datta KK, Subbannayya Y, Sahu A, Yelamanchi SD, Jayaram S, Rajagopalan P, Sharma J, Murthy KR, Syed N, Goel R, Khan AA, Ahmad S, Dey G, Mudgal K, Chatterjee A, Huang TC, Zhong J, Wu X, Shaw PG, Freed D, Zahari MS, Mukherjee KK, Shankar S, Mahadevan A, Lam H, Mitchell CJ, Shankar SK, Satishchandra P, Schroeder JT, Sirdeshmukh R, Maitra A, Leach SD, Drake CG, Halushka MK, Prasad TS, Hruban RH, Kerr CL, Bader GD, Iacobuzio-Donahue CA, Gowda H, Pandey A. Nature. 29;509(7502):575-81.IF 42.3. Citation 986

Proteome analysis revealed the essential functions of protein phosphatase PP2A in the induction of Th9 cells. Roy S, Goel R, Aggarwal S, Asthana S, Yadav AK, Awasthi A. Scientific reports. Accepted

Relative and quantitative phosphoproteome analysis of macrophages in response to infection by virulent and avirulent Mycobacteria reveals a distinct role of the cytosolic RNA sensor RIG-I in Mycobacterium tuberculosis pathogenesis. Choudhary, E;  Goel, R; Singh, A; Praharaj, M ; Thakur, P; Dhiman, R; Bishai, W; Agarwal, N. Journal of Proteome Research. 2020. Accepted.

Zinc Chelation Specifically Inhibits Early Stages of Dengue Virus Replication by Activation of NF-κB and Induction of Antiviral Response in Epithelial Cells. Kar M, Khan NA, Panwar A, Bais SS, Basak S, Goel R, Sopory S, Medigeshi GR. Front Immunol. 2019 Oct 1;10:2347.

Differential metabolic pathway analysis of the proteomes of Leishmania donovani and Leptomonas seymouri. Singh N, Goel R, Jain E. Proteomics Clinical Applications.  Prca.201600087.R4. IF 3.8. Accepted. 2018

Synovial fluid proteome in rheumatoid arthritis.Bhattacharjee M, Balakrishnan L, Renuse S, Advani J, Goel R, Sathe G, Keshava Prasad TS, Nair B, Jois R, Shankar S, Pandey A. Clinical Proteomics (2017).

Do cultural conditions induce differential protein expression: Profiling of extracellular proteome of Aspergillus terreus CM20. M S, Singh S, Tiwari R, Goel R, Nain L. Microbiology Research (2016).

Immobilization of indigenous holocellulase on iron oxide (Fe2O3) nanoparticles enhanced hydrolysis of alkali pretreated paddy straw. Kumar A, Singh S, Tiwari R, Goel R, Nain L. International Journal of Biology Macromolecule (2017).

Proteomic analysis of human vitreous humor (2014) Murthy KR*,  Goel R*, Subbannayya Y, Jacob HK, Murthy PR, Manda SS, Patil AH, Sharma R, Sahasrabuddhe NA, Parashar A, Nair BG, Krishna V, Prasad TsK, Gowda H, Pandey A Clinical Proteomics. * corresponds to shared first author. IF 3.4. Citation 43

Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis (2014) Kelkar DS, Provost E, Chaerkady R, Muthusamy B, Manda SS, Subbannayya T, Selvan LD, Wang CH, Datta KK, Woo S, Dwivedi SB, Renuse S, Getnet D, Huang TC, Kim MS, Pinto SM, Mitchell CJ, Madugundu AK, Kumar P, Sharma J, Advani J, Dey G, Balakrishnan L, Syed N, Nanjappa V, Subbannayya Y, Goel R, Prasad TS, Bafna V, Sirdeshmukh R, Gowda H, Wang C, Leach SD, Pandey A. Molecular and Cellular Proteomics. pii: mcp.M114.038299. IF 7.2

 Proteomic analysis of human osteoarthritis synovial fluid (2014) Balakrishnan L, Nirujogi RS, Ahmad S, Bhattacharjee M, Manda SS, Renuse S, Kelkar DS, Subbannayya Y, Raju R, Goel R, Thomas JK, Kaur N, Dhillon M, Tankala SG, Jois R, Vasdev V, Ramachandra Y, Sahasrabuddhe NA, Prasad TsK, Mohan S, Gowda H, Shankar S, Pandey A Clinical Proteomics. 2014 Feb 17;11(1):6. doi: 10.1186/1559-0275-11-6. IF 3.4. Citation 31

Characterizing the proteome of human ciliary body (2013) Goel R, Murthy KR, Srikanth SM, Pinto SM, Bhattacharjee M, Kelkar DS, Madugundu AK, Dey G, Mohan SS, Krishna V, Prasad TsK, Chakravarti S, Harsha H, Pandey AClinical proteomicsAug 1;10(1):9. doi: 10.1186/1559-0275-10-9. IF 3.4. Citation 18

 Activity-Based Phosphorylation Networks in Humans(2013) Newman RH, Hu J, Rho HS, Xie Z, Woodard C, Neiswinger J, Cooper C, Shirley M, Clark HM, Hu S, Hwang W, Jeong JS, Wu G, Lin J, Gao X, Ni Q, Goel R, Xia S, Ji H, Dalby KN, Birnbaum MJ, Cole PA, Knapp S, Ryazanov AG, Zack DJ, Blackshaw S, Pawson T, Gingras AC, Desiderio S, Pandey A, Turk BE, Zhang J, Zhu H, Qian J Molecular Systems Biology. 2013;9:655 IF 11.3. Citation 17

A multilectin affinity approach for comparative glycoprotein profiling between rheumatoid arthritis and spondyloarthropathy (2012) Bhattacharjee M, Goel R*, Sharma R*, Balakrishnan L, Renuse S, Advani J, Gupta ST, Verma R, Pinto SM, Sekhar NR, Nair B, Prasad TS, Harsha HC, Jois R, Shankar S, Pandey A Clinical proteomics.2013 Sep 6;10(1):11. * corresponds to shared authors. IF 3.4. Citation 3

 A pathway map of prolactin signaling (2012) Radhakrishnan A, Raju R, Tuladhar N, Subbannayya T, Thomas JK, Goel R, Telikicherla D, Palapetta SM, Rahiman BA, Venkatesh DD, Urmila KK, Harsha HC, Mathur PP, Prasad TS, Pandey A, Shemanko C, Chatterjee A Journal of Cell Communication and Signaling. 6, 169-73. IF 4.67. Citation 5

Gene Expression Profiling of Tuberculous Meningitis co-infected withHIV Kumar G S S, VenugopalA K, Kashyap M K, Raju R, Palapetta  S M,  Subbanayya Y, Goel R, DikshitJ B, Tata P, HarshaH C, Maharudraiah J, Satishchandra P, Ramachandra Y L, Prasad T S K, PandeyA, Mahadevan A and ShankarS K.. Journal of Proteomics and Bioinformatics. 5, 235-244. IF 2.56. Citation 1

Evaluation of protein expression pattern of stanniocalcin 2, insulin-like growth factor-binding protein 7, inhibin beta A and four and a half LIM domains 1 in esophageal squamous cell carcinoma (2012-2013) Kashyap MK, Pawar HA, Keerthikumar S, Sharma J, Goel R, Mahmood R, Kumar MV, Kumar KV, Pandey A, Kumar RV, Prasad TS, Harsha HC Cancer Biomarkers. 12, 1-9. IF 1.1. Citation 4

Rapid characterization of candidate biomarkers for pancreatic cancer using cell microarrays (CMAs) (2012) Kim MS, Kuppireddy SV, Sakamuri S, Singal M, Getnet D, Harsha HC, Goel R, Balakrishnan L, Jacob HK, Kashyap MK, Tankala SG, Maitra A, Iacobuzio-Donahue CA, Jaffee E, Goggins MG, Velculescu VE, Hruban RH, Pandey A Journal of Proteome Research. 11, 5556-63. IF 5.0. Citation 10

High-resolution mass spectrometry for proteogenomic analysis of an unsequenced plant - Mangifera indica (2012) Renuse S, Harsha HC, Kumar P, Acharya PK, Sharma J, Goel R, Kumar GS, Raju R, Prasad TS, Slotta T, Pandey A Journal of Proteomics. 75, 5793-5796. IF 3.9. Citation 7

Development of a Cancer Research Database for India(2012) Renu Goel, Joji Kurian Thomas, Jagadeesha Maharudraiah, Gajanan J. Sathe, Sandip N. Chavan, Sartaj Ahmad, Tejaswini Subbannayya, Sneha M. Pinto, Harsh Pawar,  Vishalakshi Nanjappa, Lavanya Balakrishnan, Lakshmi Dhevi N. Selvan, Srinivas M. Srikanth, Arivusudar Marimuthu, Aneesha Radhakrishnan, Yashwanth Subbannayya, Nirujogi Raja Sekhar, Praveen Kumar, Babylakshmi Muthusamy, Bindu Dey, M. Radhakrishnan Pillai, Partha P. Majumder,Rajendra A. Badwe, Shantikumar V. Nair, R. N. K. Bamezai, Soumen Chakraborty, Shubhada V. Chiplunkar, Thangarajan Rajkumar,Sudhir Krishna, Sharmila Bapat, K. Somasundaram, Rita Mulherkar, Subrata Sinha, T. S. Keshava Prasad, Ravi Sirdeshmukh, H. C. Harshaand Akhilesh Pandey Journal of Cancer Research and Therapeutics. IF 0.95

 A signaling network of thyroid-stimulating hormone (2011) Goel, R., Raju, R., Maharudraiah, J., Kumar, G. S. S., Ghosh, K., Kumar, A., Lashmi, P. T., Sharma, J., Sharma, R., Balakrishnan, L., Pan, A., Kandasamy, K., Christopher, R., Krishna, V., Mohan, S. S., Harsha, H. C., Mathur, P. P., Pandey, A. and Prasad, T. S. K. Journal of Proteomics and Bioinformatics. IF 2.56. Citation 5

Netslim: High-confidence curated signaling maps (2011) Raju, R., Nanjappa, V., Balakrishnan, L., Radhakrishnan, A., Thomas, J. K., Sharma, J., Tian, M., Palapetta, S. M., Subbannayya, T., Sekhar, N. R., Muthusamy, B., Goel, R., Subbannayya, Y., Telikicherla, D., Bhattacharjee, M., Pinto, S., Syed, N., Srikanth, M. S., Sathe, G. J., Ahmad, S., Chavan, S. N., Kumar, G. S. S., Marimuthu, A., Prasad, T. S. K., Harsha, H. C., Rahiman, B. A., Ohara, O., Bader, G. D., Mohan, S. S., Schiemann, W. P. and Pandey, A Database. IF 4.4. Citation16

A comprehensive map of the human urinary proteome (2011) Marimuthu, A., O'Meally, R., Chaerkady, R., Subbannayya, Y., Nanjappa, V., Kumar, P., Kelkar, D., Pinto, S., Sharma, R., Renuse, S., Goel, R., Christopher, R., Delanghe, B., Cole, R. N., Harsha, H. C. and Pandey, A Journal of Proteome Research. 10, 2734-2743. IF 5.0. Citation 57

Gene expression profiling of gastric cancer (2011) Marimuthu, A., Jacob, H. K. C., Jakharia, A., Subbannayya, Y., Keerthikumar, S., Kashyap, M. K., Goel, R., Balakrishnan, L., Dwivedi, S., Pathare, S., Dikshit, J. B., Maharudraiah, J., Singh, S., Kumar, G. S. S., Vijayakumar, M., Veerendra Kumar, K. V., Premalatha, C. S., Tata, P., Hariharan, R., Roa, J. C., Prasad, T. S. K., Chaerkady, R., Kumar, R. V. and Pandey, A Journal of Proteomics and Bioinformatics. 4, 74-82.IF 2.56. Citation 8

Comparative proteomic analysis of Candida albicans and Candida glabrata(2010) Prasad, T. S. K., Keerthikumar, S., Chaerkady, R., Kandasamy, K., Renuse, S., Marimuthu, A., Venugopal, A. K., Thomas, J. K., Jacob, H. K. C., Goel, R., Pawar, H., Sahasrabuddhe, N. A., Krishna, V., Nair, B. G., Gucek, M., Cole, R. N., Ravikumar, R., Harsha, H. C. and Pandey, A Clinical Proteomics. 6, 163-173. IF 3.4. Citation 2

Temporal profiling of the secretome during adipogenesis in humans (2010) Zhong, J., Krawczyk, S. A., Chaerkady, R., Huang, H., Goel, R., Bader, J. S., Wong, G. W., Corkey, B. E. and Pandey, A Journal of Proteome Research. 9, 5228-5238. IF 5.0. Citation 55

NetPath: A public resource of curated signal transduction pathways (2010) Kandasamy, K., Mohan, S. S., Raju, R., Keerthikumar, S., Kumar, G. S. S., Venugopal, A. K., Telikicherla, D., Navarro, J. D., Mathivanan, S., Pecquet, C., Gollapudi, S. K., Tattikota, S. G., Mohan, S., Padhukasahasram, H., Subbannayya, Y., Goel, R., Jacob, H. K. C., Zhong, J., Sekhar, R., Nanjappa, V., Balakrishnan, L., Subbaiah, R., Ramachandra, Y. L., Rahiman, B. A., Prasad, T. S. K., Lin, J., Houtman, J. C. D., Desiderio, S., Renauld, J., Constantinescu, S. N., Ohara, O., Hirano, T., Kubo, M., Singh, S., Khatri, P., Draghici, S., Bader, G. D., Sander, C., Leonard, W. J. and Pandey, A Genome Biology. 11:R3. IF 10.5. Citation 123

A compendium of potential biomarkers of pancreatic cancer (2009) Harsha, H. C., Kandasamy, K., Ranganathan, P., Rani, S., Ramabadran, S., Gollapudi, S., Balakrishnan, L., Dwivedi, S. B., Telikicherla, D., Selvan, L. D. N., Goel, R., Mathivanan, S., Marimuthu, A., Kashyap, M. K., Vizza, R. F., Mayer, R. J., DeCaprio, J. A., Srivastava, S., Hanash, S. M., Hruban, R. H. and Pandey, A PLoS Medicine. 6, e100004. IF 14. Citation 168

Human Protein Reference Database - 2009 update Prasad, T. S. K., Goel, R., Kandasamy, K., Keerthikumar, S., Kumar, S., Mathivanan, S., Telikicherla, D., Raju, R., Shafreen, B., Venugopal, A., Balakrishnan, L., Marimuthu, A., Banerjee, S., Somanathan, D. S., Sebastian, A., Rani, S., Ray, S., Kishore, C. J. H., Kanth, S., Ahmed, M., Kashyap, M., Mohmood, R., Ramachandra, Y. L., Krishna, V., Rahiman, A. B., Mohan, S., Ranganathan, P., Ramabadran, S., Chaerkady, R. and Pandey, A Nucleic Acids Research. 37, D767-D772. IF 8.8. citation 2229

Human Proteinpedia: A unified discovery resource for proteomics research (2009) Kandasamy, K., Keerthikumar, S., Goel, R., Mathivanan, S., Patankar, N., Shafreen, B., Renuse, S., Pawar, H., Ramachandra, Y. L., Acharya, P. K., Ranganathan, P., Chaerkady, R., Prasad, T. S. K. and Pandey, A. (2009). Nucleic Acids Research. 37, D773-D781. IF 8.8. citation 54

Human Proteinpedia enables sharing of human protein data (2008) Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Björling E, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, Bustelo XR, Cagney G, Cantin GT, Cardasis HL, Celis JE, Chaerkady R, Chu F, Cole PA, Costello CE, Cotter RJ, Crockett D, DeLany JP, De Marzo AM, DeSouza LV, Deutsch EW, Dransfield E, Drewes G, Droit A, Dunn MJ, Elenitoba-Johnson K, Ewing RM, Van Eyk J, Faca V, Falkner J, Fang X, Fenselau C, Figeys D, Gagné P, Gelfi C, Gevaert K, Gimble JM, Gnad F, Goel R, Gromov P, Hanash SM, Hancock WS, Harsha HC, Hart G, Hays F, He F, Hebbar P, Helsens K, Hermeking H, Hide W, Hjernø K, Hochstrasser DF, Hofmann O, Horn DM, Hruban RH, Ibarrola N, James P, Jensen ON, Jensen PH, Jung P, Kandasamy K, Kheterpal I, Kikuno RF, Korf U, Körner R, Kuster B, Kwon MS, Lee HJ, Lee YJ, Lefevre M, Lehvaslaiho M, Lescuyer P, Levander F, Lim MS, Löbke C, Loo JA, Mann M, Martens L, Martinez-Heredia J, McComb M, McRedmond J, Mehrle A, Menon R, Miller CA, Mischak H, Mohan SS, Mohmood R, Molina H, Moran MF, Morgan JD, Moritz R, Morzel M, Muddiman DC, Nalli A, Navarro JD, Neubert TA, Ohara O, Oliva R, Omenn GS, Oyama M, Paik YK, Pennington K, Pepperkok R, Periaswamy B, Petricoin EF, Poirier GG, Prasad TS, Purvine SO, Rahiman BA, Ramachandran P, Ramachandra YL, Rice RH, Rick J, Ronnholm RH, Salonen J, Sanchez JC, Sayd T, Seshi B, Shankari K, Sheng SJ, Shetty V, Shivakumar K, Simpson RJ, Sirdeshmukh R, Siu KW, Smith JC, Smith RD, States DJ, Sugano S, Sullivan M, Superti-Furga G, Takatalo M, Thongboonkerd V, Trinidad JC, Uhlen M, Vandekerckhove J, Vasilescu J, Veenstra TD, Vidal-Taboada JM, Vihinen M, Wait R, Wang X, Wiemann S, Wu B, Xu T, Yates JR, Zhong J, Zhou M, Zhu Y, Zurbig P, Pandey A.Nature Biotechnology, 26(2):164-7. IF 39.08. Citation 123

Proteomics of human aqueous humor. Murthy, K. R., Rajagopalan, P., Pinto, S. M., Advani, J., Murthy, P. R., Goel, R., Subbannayya, Y., Balakrishnan, L., Dash, M., Anil, A. K., Manda, S. M., Nirujogi, R. S., Kelkar, D. S., Sathe, G. J., Dey, G., Chatterjee, A., Gowda, H., Chakravarti, S., Shankar, S., Sahasrabuddhe, N. A., Nair, B., Somani, B. L., Prasad, T. S. K. and Pandey, A. (2015). OMICS: A Journal of Integrative Biology. 19, 283-293.

Review articles

Human Protein Reference Database and Human Proteinpedia as discovery resources for molecular biotechnology (2010) Goel, R., Muthusamy, B., Pandey, A. and Prasad, T. S. K Molecular Biotechnology. 48, 87-95. IF 2.2. Citation 26

Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis (2011) Goel, R., Harsha, H. C., Pandey, A. and Prasad, T. S. K Molecular Biosystems. 2012 Feb;8(2):453-63. IF 3.1. Citation 56

A Multidimensional Approach to Explore the Use of a Small Heterobifunctional Crosslinker based on a Metabolite of the Kynurenine Pathway 2018. Sujeet Kumar Thakur, Mitul Srivastava, Ankur Kumar, Renu Goel, Shailendra Asthana and Sambasivan Venkat Eswaran.

ESI-MSBioinformatics Studies on Crosslinking of αA-Crystallin and Lysozyme using a New Small Aryl Azido-N-HydroxySuccinimidyl Heterobifunctional Crosslinker based on a Metabolite of the Alternative Kynurenine Pathway. 2018. Sujeet Kumar Thakur, Shreya Pal, Ankur Kumar, Renu Goel and Sambasivan Venkat Eswaran.

An iTRAQ Based Comparative Proteomic Profiling of Thermotolerant Saccharomyces cerevisiae JRC6 in Response to High Temperature Fermentation. 2019. Jairam Choudhary, Surender Singh, Rameshwar Tiwari. Current Proteomics.
Renu Goel and Lata Nain.

Development of India Cancer Research Database, funded by DBT as Principal Investigator ( 2011-2013)

Selected invited presentation

1. 3rd international conference on mass spectrometry, proteomics and polymer chemistry, held during 20-21, 2019 in Rome, Italy.

2. 11th annual meeting of proteomics society India, 2019 and international conference on proteomics for system integrated bio-omics, one health and food safety. 2nd to 4th December 2019