Foss S, Sakya SA, Aguinagalde L, Lustig M, Shaughnessy J, Cruz AR, Scheepmaker L, Mathiesen L, Ruso-Julve F, Anthi AK, Gjølberg TT, Mester S, Bern M, Evers M, Bratlie DB, Michaelsen TE, Schlothauer T, Sok D, Bhattacharya J, Leusen J , Valerius T, Ram S, Rooijakkers SHM, Sandlie I, Andersen JT, Human IgG Fc-engineering for enhanced plasma half-life, mucosal distribution and killing of cancer cells and bacteria, Nature Communications, 15, 2007, https://doi.org/10.1038/s41467-024-46321-9

Ghosal M, Rakshit T, Bhattacharya S, Bhattacharyya S, Satpati P, Senapati D. E-Protein Protonation Titration-Induced Single-Particle Chemical Force Spectroscopy for Microscopic Understanding and pI Estimation of Infectious DENV, J Phys Chem B, 10.1021/acs.jpcb.4c00057

Sasi A, Dandotiya J, Kaushal J, Ganguly S, Binayke A, Ambika KM, Shree A, Jahan F, Sharma P, Suri TM, Awasthi A, Bakhshi S. Humoral and cellular immunity to SARS-CoV-2 following vaccination with non-mRNA vaccines in adolescent/young adults with cancer: A prospective cohort study, Vaccine, S0264-410X, 24, 00329-3, 10.1016/j.vaccine.2024.03.042

Venugopal S, Chunchanur S, Panigrahy R, Tak V, Yadav M, Chauhan A, Ks H, R J, Pundir S, Bhatt S, Behera B, M S, R A, Chaudhuri S, Mohapatra S; Investigators of CAUTION-ED STUDY(Community-acquired UTI & Emerging Drug Resistance), Changes in antimicrobial resistance of Escherichia coli isolated from community associated urinary tract infection before and during the COVID-19 pandemic in India.  J Glob Antimicrob Resist. S2213-7165, 24, 50, 10.1016/j.jgar.2024.02.022

Chugh S, Bahal RK, Dhiman R, Singh R. Antigen identification strategies and preclinical evaluation models for advancing tuberculosis vaccine development. NPJ Vaccines, 9, 1, 57, 10.1038/s41541-024-00834-y

Foss S, Sakya SA, Aguinagalde L, Lustig M, Shaughnessy J, Cruz AR, Scheepmaker L, Mathiesen L, Ruso-Julve F, Anthi AK, Gjølberg TT, Mester S, Bern M, Evers M, Bratlie DB, Michaelsen TE, Schlothauer T, Sok D, Bhattacharya J, Leusen J , Valerius T, Ram S, Rooijakkers SHM, Sandlie I, Andersen JT.  Human IgG Fc-engineering for enhanced plasma half-life, mucosal distribution and killing of cancer cells and bacteria. Nature Communications, 15, 2007, https://doi.org/10.1038/s41467-024-46321-9

Kaur S, Vashistt J, Sharma A, Parkash J, Kumar A, Duseja A, Changotra H. Mutagenic primer-based novel multiplex PCR-RFLP technique to genotype BECN1 SNPs rs10512488 and rs11552192, Mol Biol Rep. 51, 1, 384, 10.1007/s11033-024-09277-z

Gadekar VP, Damaraju N, Xavier A, Thakur SB, Vijayram, R, Desiraju BK, Misra S, GARBH-IniStudyGroup, Wadhwa N, Khurana A, Rathore S, Abraham A, Rengaswamy R, Benjamin S, Cherian AG, Bhatnagar S, Thiruvengadam R, Sinhaa H, Development and external validation of Indian population-specific Garbhini-GA2 model for estimating gestational age in second and third trimesters, The Lancet Regional Health - Southeast Asia, 100362, https://doi.org/10.1016/j.lansea.2024

Medigeshi GR, Islam F, Lodha R, Quadrivalent denguevirus vaccines: challenges and opportunities for India, Lancet Infect Dis, S1473-3099, 24, 00137-3.

Kumar S, Sarmah DT, Paul A, Chatterjee S, Exploration of functional relations among differentially co-expressed genes identifies regulators in glioblastoma. Comput Biol Chem. 109, 108024, 10.1016/j.compbiolchem.2024.108024

Aggarwal C, Ahmed H, Sharma P, Reddy ES, Nayak K, Singla M, Maheshwari D, Chawla YM, Panda H, Rai RC, Gunisetty S, Priyamvada L, Bhaumik SK, Ahamed SF, Vivek R, Bhatnagar P, Singh P, Kaur M, Dixit K, Kumar S, Gottimukkala K, Saini K, Bajpai P, Sreekanth GP, Mammen S, Rajan A, Verghese VP, Abraham AM, Shah P, Alagarasu K, Yu T, Davis CW, Wrammert J, Ansari A, Antia R, Kabra SK, Medigeshi GR, Ahmed R, Lodha R, Shet A, Chandele A, Murali-Krishna K. Severe disease during both primary and secondary dengue virus infections in pediatric populations.Nature Medicine, 10.1038/s41591-024-02798-x

Manak M, Gagnon L, Phay-Tran S, Levesque-Damphousse P, Fabie A, Daugan M, Khan ST, Proud P, Hussey B, Knott D, Charlton S, Hallis B, Medigeshi GK, Garg N, Anantharaj A, Raqib R, Sarker P, Alam MM, Rahman M, Murreddu M, Balgobind A, Hofman R, Grappi S, Coluccio R, Calandro P, Montomoli E, Mattiuzzo G, Prior S, Le Duff Y, Page M, Mitchell J, Schwartz LM, Bartsch YC, Azizi A, Bernasconi V; CEPI CLN Study Group, Standardised quantitative assays for anti-SARS-CoV-2 immune response used in vaccine clinical trials by the CEPI Centralized Laboratory Network: a qualification analysis, Lancet Microbe. S2666-5247, 23, 00324-5, 10.1016/S2666-5247(23)00324-5

Siddqui G, Vishwakarma P, Saxena S, Kumar V, Bajpai S, Kumar A, Kumar S, Khatri R, Kaur J, Bhattacharya S, Ahmed S, Syed GH, Kumar Y, Samal S. Aged AG129 mice support the generation of highly virulent novel mouse-adapted DENV (1-4) viruses exhibiting neuropathogenesis and high lethality. Virus Res. 199331, 10.1016/j.virusres.2024.199331

Kedia S, Virmani S, Bajaj A, Markandey M, Singh N, Madan D, Kaushal K, Sahu P, Vuyyuru SK, Kante B, Kumar P, Thomas DM, Mundhra SK, Singh MK, Verma M, Sharma R, Das P, Dash NR, Monga N, Awasthi A, Makharia G, Ahuja V, Coconut water induces clinical remission in mild to moderate ulcerative colitis: double-blind placebo controlled trial. Clin Gastroenterol Hepatol.  Clin Gastroenterol Hepatol. S1542-3565, 24, 00088-0, 10.1016/j.cgh.2024.01.013.

Singh M, Indurthi DC, Mittal L, Auerbach A, Asthana S, Conformational dynamics of a nicotinic receptor neurotransmitter binding site,  eLife, 10.7554/eLife.92418.1

Singh P, Kumar A, Sharma P, Chugh S, Kumar A, Sharma N, Gupta S, Singh M, Kidwai S, Sankar J, Taneja N, Kumar Y, Dhiman R, Mahajan D, Singh R. Identification and optimization of pyridine carboxamide-based scaffold as a drug lead for Mycobacterium tuberculosis. Antimicrob Agents Chemother. e0076623, 10.1128/aac.00766-23.

Pal R, Talwar S, Pandey M, Nain VK, Sharma T, Tyagi S, Barik V, Chaudhary S, Gupta SK, Kumar Y, Nanda R, Singhal A, Pandey AK, Rv0495c regulates redox homeostasis in Mycobacterium tuberculosis. Tuberculosis (Edinb). 145, 102477, 10.1016/j.tube.2024.102477

Chugh S, Tiwari P, Suri C, Gupta SK, Singh P, Bouzeyen R, Kidwai S, Srivastava M, Rameshwaram NR,Kumar Y, Asthana S, Singh R, Polyphosphate kinase-1 regulates bacterial and host metabolic pathways involved in pathogenesis of Mycobacterium tuberculosis., PNAS, 121, 2, 10.1073/pnas.230966412.

Binayke A, Zaheer A, Vishwakarma S, Singh S, Sharma P, Chandwaskar R, Gosain M, Raghavan S, Murugesan DR, Kshetrapal P, Thiruvengadam R, Bhatnagar S, Pandey AK, Garg PK, Awasthi A.  A quest for universal anti-SARS-CoV-2 T cell assay: systematic review, meta-analysis, and experimental validation. NPJ Vaccines, 9, 1, 3, 10.1038/s41541-023-00794-9.

Raj, A., Aggarwal, S., Singh P, Yadav Ak., Dash D.  PgxSAVy: a tool for comprehensive evaluation of variant peptide quality in proteogenomics – catching the (un)usual suspects, Computational and Structural Biotechnology Journal, 10.1016/j.csbj.2023.12.033.

Misra P, Singh AK, Mishra B, Behera B, Patro BK, Medigeshi GR, Joshi HS, Ahmad M, Chaturvedi PK, Chinnakali P, Haldar P, Bairwa M, Kharya P, Dhodapkar R, Rath R, Guleria R, Rai SK, Kar SS, Kant S, Sarkar S, Baidya S, Meena S, Mandal S, Kishore S, Majumder T, Hada V.  Anti-SARS-CoV-2 antibody kinetics up to 6 months of follow-up: Result from a nation-wide population-based, age stratified sero-epidemiological prospective cohort study in India. PLoS One, 18, 12, e0287807, 10.1371/journal.pone.0287807

Paul D, Chawla M, Ahrodia T, Narendrakumar L, Das B. Antibiotic Potentiation as a Promising Strategy to Combat Macrolide Resistance in Bacterial Pathogens. Antibiotics (Basel), 12, 12, 1715, 10.3390/antibiotics12121715

Jayaswal P, Ilyas M, Singh K, Kumar S, Sisodiya L, Jain S, Mahlawat R, Sharma N, Gupta V, Atmakuri K, Enrichment of Native and Recombinant Extracellular Vesicles of Mycobacteria. J Vis Exp. 202, 10.3791/65138

Misra P, Garg PK, Awasthi A, Kant S, Rai SK, Ahmad M, Guleria R, Deori TJ, Mandal S, Jaiswal A, Gongal G, Vishwakarma S, Bairwa M, Kumar R, Haldar P, Binayke A, Cell-Mediated Immunity (CMI) for SARS-CoV-2 Infection Among the General Population of North India: A Cross-Sectional Analysis From a Sub-sample of a Large Sero-Epidemiological Study. Cureus, 15, 11, e48824, 10.7759/cureus.48824.

Priya K, Dagar M, Dikshit M, Kumar A, Herbal Constituents of AYUSH-64 Formulation Modulate Release of Cytokines in TLR7/8-Induced Macrophage-Like Cells, J Clin Exp Pharmacol, 13, 394, 10.35248/2161-1459.23.13.394.

Haider M, Sharma S, Agrahari AK, Dikshit M, Pathak DP, Asthana S. Crystallographic mining driven computer-guided approach to identify the ASK1 inhibitor likely to perturb the catalytic region. J Biomol Struct Dyn. 2023 Dec 9:1-15. doi: 10.1080/07391102.2023.2291545. 

Babele P, Midha M K, Rao KVS, Kumar A, Temporal Profiling of Host Proteome against Different M. tuberculosis Strains Reveals Delayed Epigenetic Orchestration, Microorganisms, 11, 12, 2998, 10.3390/microorganisms11122998

Ahmed N, Athavale A, Tripathi AH, Subramaniam A, Upadhyay SK, Pandey AK, Rai RC, Awasthi A, To be remembered: B cell memory response against SARS-CoV-2 and its variants in vaccinated and unvaccinated individuals, Scandinavian Journal of Immunology, 10.1111/sji.13345

Das A, Jawla N, Meena V, Gopinath SD, Arimbasseri GA, Lack of vitamin D signalling shifts skeletal muscles towards oxidative metabolism, Journal of Cachexia, Sarcopenia and Muscle, 10.1002/jcsm.13378

Kumari D, Gautam J, Sharma V, Gupta SK, Sarkar S, Jana P, Singhal V, Babele P, Kamboj P, Bajpai S, Tandon R, Kumar Y, Dikshit M. Effect of herbal extracts and Saroglitazar on high-fat diet-induced obesity, insulin resistance, dyslipidemia, and hepatic lipidome in C57BL/6J mice. Heliyon, e22051, 10.1016/j.heliyon.2023.e22051

Raj, A., Aggarwal, S., Kumar, D. Yadav Ak., Dash D. Proteogenomics 101: a primer on database search strategies. J Proteins Proteom, 10.1007/s42485-023-00118-4

Kumari S, Bandyopadhyay B, Singh A, Aggarwal S, Yadav AK, Vikram NK, Guchhait P, Banerjee A, Extracellular vesicles recovered from plasma of severe dengue patients induce CD4+ T cell suppression through PD-L1/PD-1 interaction, mBio, epub/10.1128/mbio.01823-23

Aggarwal H, Gautam J, Kumari D, Gupta SK, Bajpai S, Chaturvedi K, Kumar Y, Dikshit M. Comparative profiling of gut microbiota and metabolome in diet-induced obese and insulin-resistant C57BL/6J mice. Biochim Biophys Acta Mol Cell Res, 119643, 10.1016/j.bbamcr.2023.119643

Gupta A, Mathew R, Anand A, Bhardwaj T, Singh A, Singh K, Kumar A, Mishra PR, Sharma TK. A DNA aptamer-based assay for the detection of soluble ST2, a prognostic biomarker for monitoring heart failure. Int J Biol Macromol, 128295, 10.1016/j.ijbiomac.2023.128295

Sadhu S, Dandotiya J, Dalal R, Khatri R,  Mykytyn AZ, Batra A, Kaur M, Chandwaskar R, Singh V, Kamboj A, Srivastava M, Mani S, Asthana S, Samal S, Rizvi ZA, Salunke DB, Haagmans BL, Awasthi A, Fangchinoline inhibits SARS-CoV-2 and MERS-CoV entry, Antiviral Research, 105743, 10.1016/j.antiviral.2023.105743

Purkait D, Ilyas M, Atmakuri K. Protein-Protein Interactions: Bimolecular Fluorescence Complementation and Cytology Two Hybrid. Methods Mol Biol. (Book Chapter), 2715, 247-257, 10.1007/978-1-0716-3445-5_16

Halder S, Das PN, Ghosh S, Bairagi N, Chatterjee S. Studying the role of random translocation of GLUT4 in cardiomyocytes on calcium oscillations. Applied Mathematical Modelling 125 (2024) 599–616; https://doi.org/10.1016/j.apm.2023.10.006

Arora G, Banerjee M, Langthasa J, Bhat R, Chatterjee S, Targeting metabolic fluxes reverts metastatic transitions in ovarian cancer., iScience, 26, 11, 108081, 10.1016/j.isci.2023.108081.

Mittal L, Tonk RK, Awasthi A, Asthana S, Harnessing the druggability at orthosteric and allosteric sites of PD-1 for small molecule discovery by an integrated in silico pipeline. Comput Biol Chem.,107, 107965, 10.1016/j.compbiolchem.2023.107965, 

Monangi NK, Xu H, Fan Y, Khanam R, Khan W, Deb S, Pervin J, Price JT, Kaur L; INTERBIO-21(st) Study Consortium; Al Mahmud A, Thanh LQ, Care A, Landero JA, Combs GF, Belling E, Chappell J, Chen J, Kong F, Lacher C, Ahmed S, Chowdhury NH, Rahman S, Kabir F, Nisar I, Hotwani A, Mehmood U, Nizar A, Khalid J, Dhingra U, Dutta A, Ali SM, Aftab F, Juma MH, Rahman M, Ahmed T, Islam MM, Vwalika B, Musonda P, Ashorn U, Maleta K, Hallman M, Goodfellow L, Gupta JK, Alfirevic A, Murphy SK, Rand L, Ryckman KK, Murray JC, Bahl R, Litch JA, Baruch-Gravett C, Sopory S, Natchu UCM, Kumar PV, Kumari N, Thiruvengadam R, Singh AK, Kumar P; GARBH-Ini study team; Alfirevic Z, Baqui AH, Bhatnagar S, Hirst JE, Hoyo C, Jehan F, Jelliffe-Pawlowski L, Rahman A, Roth DE, Sazawal S, Stringer JSA, Ashorn P, Zhang G, Muglia LJ. Association of maternal prenatal copper concentration with gestational duration and preterm birth: a multi-country meta-analysis. Am J Clin Nutr. S0002-9165, 23, 66185, 10.1016/j.ajcnut.2023.10.011

Anantharaj A, Agrawal T, Shashi PK, Tripathi A, Kumar P, Khan I, Pareek M, Singh B, Pattabiraman C, Kumar S, Pandey R, Chandele A, Lodha R, Whitehead SS, Medigeshi GR. Neutralizing antibodies from prior exposure to dengue virus negatively correlate with viremia on re-infection. Commun Med (Lond). 3, 1, 148, 10.1038/s43856-023-00378-7

Thiruvengadam R, Rizvi ZA, Raghavan S, Murugesan DR, Gosain M, Dandotiya J, Ayushi, Samal S, Pandey AK, Wadhwa N, Bhatnagar S, Awasthi A, Garg PK. Clinical and experimental evidence suggest omicron variant of SARS-CoV-2 is inherently less pathogenic than delta variant independent of previous immunity. Eur J Med Res. 28, 1, 421, 10.1186/s40001-023-01373-3

Agrawal K, Asthana S, Kumar D. Role of Oxidative Stress in Metabolic Reprogramming of Brain Cancer. Cancers (Basel), 15, 20, 4920, 10.3390/cancers15204920

Das S, Parray HA, Chiranjivi AK, Kumar P, Goswami A, Bansal M, Rathore DK, Kumar R, Samal S. Kennedy Epitope (KE)-dependent Retrograde Transport of Efficiently Cleaved HIV-1 Envelopes (Envs) and its Effect on Env Cell Surface Expression and Viral Particle Formation. Protein J, 10.1007/s10930-023-10161-1

Gujjar S, Tyagi A, Sainger S, Bharti P, Nain V, Sood P, Jayabal P, Sharma JC, Sharma P, Rajput S, Pandey AK, Pandey AK, Abnave P, Mathapati S. Biocompatible Human Placental Extracellular Matrix Derived Hydrogels. Adv Biol (Weinh), e2300349, 10.1002/adbi.202300349

Dengue Alliance, Dengue Alliance. Treatments for dengue: a Global Dengue Alliance to address unmet needs. Lancet Glob Health, e1680-e1681, 10.1016/S2214-109X(23)00362-5

Subramaniam A, Naidu MBL, Athavale A, Rai RC and Awasthi A; Targeting Spike Protein: Modified Antibody for Broad-Spectrum Binding to Coronaviruses: An In Silico Study. Virology & Immunology Journal; 20th Sep 2023; DOI: 10.23880/vij-16000324

Gupta SK, Mochan S, Arora P, Rani N, Luthra K, Dwivedi S, Bhatla N, Kshetrapal P, Dhingra R.  Hydrogen sulfide promotes migration of trophoblast cells by a Rho GTPase mediated actin cytoskeleton reorganization. Placenta, 142, 135-146, 10.1016/j.placenta.2023.09.004

Pant A, Das B, Arimbasseri GA, Host microbiome in tuberculosis: disease, treatment, and immunity perspectives, Front Microbiol, 14, https://doi.org/10.3389/fmicb.2023.1236348

Rizvi ZA, Madan U, Tripathy MR, Goswami S, Mani S, Awasthi A, Dikshit M. Evaluation of Ayush-64 (a Polyherbal Formulation) and Its Ingredients in the Syrian Hamster Model for SARS-CoV-2 Infection Reveals the Preventative Potential of Alstonia scholaris. Pharmaceuticals (Basel), 16, 9, 1333, 10.3390/ph16091333

Babele P, Yadav AK, Back2Basics: mass-to-charge ratio (m/z) in proteomics, J Proteins Proteom, https://doi.org/10.1007/s42485-023-00115-7

Rizvi ZA, Dandotiya J, Sadhu S, Khatri R, Singh J, Singh V, Adhikari N, Sharma K, Das V, Pandey AK, Das B, Medigeshi G, Mani S, Bhatnagar S, Samal S, Pandey AK, Garg PK, Awasthi A. Omicron sub-lineage BA.5 infection results in attenuated pathology in hACE2 transgenic mice. Commun Biol. 6, 1, 935, 10.1038/s42003-023-05263-6

Dagar M, Priya K, Dikshit M, Kumar A, Pharmacological Evaluations of Select Herbal Extracts on TLR7/8-induced Cytokine and Chemokine Production in Macrophage-like Cells, J Clin Exp Pharmacol, 13, 374, 10.35248/2161-1459.23.13.374

Soni A, Saha S, Agarwal A, Rauf ARA, Singh RK, Seth M,   Singh SK, Sinha S, Shirumalla RK, Marumoto S, Tandon R* 2-{N-[(2,4,5-trichlorophenoxy) acetyl]-N-methylamino}-3-pyrrolidinepropanamides analogs as potential antagonists of Urotensin-II receptor,  J Recep Sig Trans, 2022, 2023 Feb;43(1):1-8. doi: 10.1080/10799893.2022.2164306. Epub 2023 Jan 18. (*Corresponding author).

Khatri R, Lohiya B, Kaur G, Maithil V, Goswami A, Sarmadhikari D, Asthana S, Samal S, Understanding the role of conserved proline and serine residues in the SARS‑CoV‑2 spike cleavage sites in the virus entry, fusion, and infectivity, 3 Biotech, 13, 323, 10.1007/s13205-023-03749-y

Duggal S, Rawat S, Siddqui G, Vishwakarma P, Samal S, Banerjee A, Vrati S, Dengue virus infection in mice induces bone marrow myeloid cell differentiation and generates Ly6glow immature neutrophils with modulated functions, Journal of Leukocyte Biology, qiad099, https://doi.org/10.1093/jleuko/qiad099 

Sisodia R, Sarmadhikari D, Mazumdar PA, Asthana S, Madhurantakam C. Molecular analysis of dUTPase of Helicobacter pylori for identification of novel inhibitors using in silico studies. J Biomol Struct Dyn. 1-26, 10.1080/07391102.2023.2247080

Alam MJ, Kamboj P, Sarkar S, Gupta SK, Kasarla SS, Bajpai S, Kumari D, Bisht N, Barge SR, Kashyap B, Deka B, Bharadwaj S, Rahman S, Dutta PP, Borah JC, Talukdar NC, Kumar Y, Banerjee SK. Untargeted metabolomics and phenotype data indicate the therapeutic and prophylactic potential of Lysimachia candida Lindl. towards high-fat high-fructose-induced metabolic syndrome in rats. Mol Omics, 10.1039/d3mo00104k

Mehrotra T, Konar D, Pragasam AK, Kumar S, Jana P, Babele P, Paul D, Purohit A, Tanwar S, Bakshi S, Das S, Verma J, Talukdar D, Narendrakumar L, Kothidar A, Karmakar SP, Chaudhuri S, Pal S, Jain K, Srikanth CV, Sankar MJ, Atmakuri K, Agarwal R, Gaind R, Ballal M, Kammili N, Bhadra RK, Ramamurthy T, Nair GB, Das B. Antimicrobial resistance heterogeneity among multidrug-resistant Gram-negative pathogens: Phenotypic, genotypic, and proteomic analysis. Proc Natl Acad Sci U S A. 2023 Aug 15;120(33):e2305465120. doi: 10.1073/pnas.2305465120.

Pant A, Maiti TK, Mahajan D, Das B.  Human Gut Microbiota and Drug Metabolism. Microb Ecol. 86, 1, 97-111, 10.1007/s00248-022-02081-x

Pal P, Khan MY, Sharma S, Kumar Y, Mangla N, Kaushal PS, Agarwal N. ResR/McdR-regulated protein translation machinery contributes to drug resilience in Mycobacterium tuberculosis. Commun Biol. 6, 1, 708, 10.1038/s42003-023-05059-8

Sadhu S, Dalal R, Dandotiya J, Binayke A, Singh V, Tripathy MR, Das V, Goswami S, Kumar S, Rizvi ZA, Awasthi A. IL-9 aggravates SARS-CoV-2 infection and exacerbates associated airway inflammation. Nat Comm, 14, 1, 4060, 10.1038/s41467-023-39815-5

Kumar S, Verma R, Saha S, Agrahari AK, Shukla S, Singh ON, Berry U, Anurag, Maiti TK, Asthana S, Ranjith-Kumar CT, Surjit M.  RNA-Protein Interactome at the Hepatitis E Virus Internal Ribosome Entry Site.  Microbiol Spectr. 10.1128/spectrum.02827-22

Batra G, Murugesan DR, Raghavan S, Chattopadhyay S, Mehdi F, Ayushi, Gosain M, Singh S, Das SJ, Deshpande S, Sonar S, Jakhar K, Bhattacharya J, Mani S, Pandey AK, Sankalp, Goswami S, Das A, Dwivedi T, Sharma N, Kumar S, Sharma P, Kapoor S, Kshetrapa P, Wadhwa N, Thiruvengadam R, Kumar R, Gupta R, Garg PK, Bhatnagar S. Trends of humoral immune responses to heterologous antigenic exposure due to vaccination & omicron SARS-CoV-2 infection: Implications for boosting. Inidian J Med Res, 10.4103/ijmr.ijmr_2521_22

Das J, Wadhwa N, Natchu UC, Thiruvengadam R, Kshetrapal P, Bhatnagar S, Majumder PP, Maitra A. Genome-wide temporal landscaping of DNA methylation in pregnant women delivering at term: a GARBH-InI study. Epigenomics, 10.2217/epi-2023-0145

Thiruvengadam R, Desiraju BK, Sachdev HS, Bhatnagar S. The challenges in gestational weight gain monitoring in low and middle income settings. Eur J Clin Nutr. 10.1038/s41430-023-01292-w

Gautam J, Kumari D, Aggarwal H, Gupta SK, Kasarla SS, Sarkar S, Priya MRK, Kamboj P, Kumar Y, Dikshit M.  Characterization of lipid signatures in the plasma and insulin-sensitive tissues of the C57BL/6J mice fed on obesogenic diets. Biochim Biophys Acta Mol Cell Biol Lipids. 1868, 9, 159348, 10.1016/j.bbalip.2023.159348.

Paul A, Kundu J, Chatterjee S,  A minimal mathematical model to study insulin synthesis and secretion process, Applied Mathematical Modelling, 122, 456-476, 10.1016/j.apm.2023.06.012

Sarmah DT, Paul A, Kumar S, Bairagi N, Chatterjee S,  A data-driven multilayer approach for the identification of potential therapeutic targets in non-alcoholic steatohepatitis. Physica A, 624, 128955, 10.1016/j.physa.2023.128955.

Sharma PK, Kumar L, Goswami Y, Pujani M, Dikshit M, Tandon R, The aqueous root extract of Withania somnifera ameliorates LPS-induced inflammatory changes in the in vitro cell-based and mice models of inflammation,  Frontiers in Pharmacology, DOI: I 10.3389/fphar.2023.1139654

Adela R, Kasarla SS, Saquib N, Gupta SK, Bajpai S, Kumar Y, Banerjee SK, Untargeted metabolomics reveals altered branch chain amino acids, glucose and fat metabolism contributing to coronary artery disease among Indian diabetic patients. Mol Omics, 4.04, 10.1039/d2mo00320a.

Pillai D, Narayan J, Gentry-Maharaj A, Deo S, Vijaykumar DK, Mukherjee P, Wadhwa N, Bhasin A, Mishra A, Rajanbabu A, Kannan R, Husain Z, Kumar A, Antoniou AC, Manchanda R, Menon U, Co-Creation of Breast Cancer Risk Communication Tools and an Assessment of Risk Factor Awareness: A Qualitative Study of Patients and the Public in India, Cancers, 15, 11, 2973, https://doi.org/10.3390/cancers15112973

Panwar A, Kumar R, Goel R, Aggarwal S, Saraswat S, Bansal P, Gonmei Z, Toteja G, Yadav A, Lodha R, Singh N, Medigeshi G. Severe dengue in children associates with dysregulation of lipid homeostasis, complement cascade and retinol transport. Clin Transl Med. 8.554, 13, 6, e1271, 10.1002/ctm2.1271

Pandey M, Talwar S, Pal R, Nain V, Johri S, Singhal A, Pandey AK.  Transcription factor mce3R modulates antibiotics and disease persistence in Mycobacterium tuberculosis.  Res Microbiol. 3.946, 10.1016/j.resmic.2023.104082

Ahrodia T, Kandiyal B, Das B. Microbiota and epigenetics: Health impact. Prog Mol Biol Transl Sci. 3.622, 10.1016/bs.pmbts.2023.03.018

Gahtori R, Tripathi AH, Chand G, Pande A, Joshi P, Rai RC, Upadhyay SK. Phytochemical Screening of Nyctanthes arbor-tristis Plant Extracts and Their Antioxidant and Antibacterial Activity Analysis. Appl Biochem Biotechnol. 3.094, 10.1007/s12010-023-04552-4

Saikrishna K, Talukdar D, Das S, Bakshi S, Chakravarti P, Jana P, Karmakar S, Wig N, Das B, Ray A. Study on Effects of Probiotics on Gut Microbiome and Clinical Course in Patients with Critical Care Illnesses. Microb Ecol. 4.192, 10.1007/s00248-023-02224-8

Talukdar D, Bandopadhyay P, Ray Y, Paul SR, Sarif J, D’Rozario R, Lahiri A, Bhowmick D, Chatterjee S, Das B*, Ganguly D (2023) Association of gut microbial dysbiosis with disease severity, response to therapy and disease outcomes in Indian patients with COVID-19. Gut Pathogens. https://doi.org/10.1186/s13099-023-00546-z

Thuluva S, Paradkar V, Gunneri S, Yerroju V, Mogulla R, Suneetha PV, Turaga K, Kyasani M, Manoharan SK, Adabala S, Sri Javvadi A, Medigeshi G, Singh J, Shaman H, Binayke A, Zaheer A, Awasthi A, Singh C, Rao A V, Basu I, Kumar KAA, Pandey AK. Immunogenicity and safety of Biological E's CORBEVAX™ vaccine compared to COVISHIELD™ (ChAdOx1 nCoV-19) vaccine studied in a phase-3, single blind, multicentre, randomized clinical trial. Hum Vaccin Immunother.  4.526, 2203632, 10.1080/21645515.2023.2203632

Hooli S, King C, McCollum ED, Colbourn T, Lufesi N, Mwansambo C, Gregory CJ, Thamthitiwat S, Cutland C, Madhi SA, Nunes MC, Gessner BD, Hazir T, Mathew JL, Addo-Yobo E, Chisaka N, Hassan M, Hibberd PL, Jeena P, Lozano JM, MacLeod WB, Patel A, Thea DM, Nguyen NTV, Zaman SM, Ruvinsky RO, Lucero M, Kartasasmita CB, Turner C, Asghar R, Banajeh S, Iqbal I, Maulen-Radovan I, Mino-Leon G, Saha SK, Santosham M, Singhi S, Awasthi S, Bavdekar A, Chou M, Nymadawa P, Pape JW, Paranhos-Baccala G, Picot VS, Rakoto-Andrianarivelo M, Rouzier V, Russomando G, Sylla M, Vanhems P, Wang J, Basnet S, Strand TA, Neuman MI, Arroyo LM, Echavarria M, Bhatnagar S, Wadhwa N, Lodha R, Aneja S, Gentile A, Chadha M, Hirve S, O'Grady KF, Clara AW, Rees CA, Campbell H, Nair H, Falconer J, Williams LJ, Horne M, Qazi SA, Nisar YB; Pneumonia REsearch Partnership to Assess WHO REcommendations (PREPARE) study group. In-hospital mortality risk stratification in children aged under 5 years with pneumonia with or without pulse oximetry: A secondary analysis of the Pneumonia REsearch Partnership to Assess WHO REcommendations (PREPARE) dataset. Int J Infect Dis. , 9.022, 129, 240-250, 10.1016/j.ijid.2023.02.005.

Adejuyigbe EA, Agyeman I, Anand P, Anyabolu HC, Arya S, Assenga EN, Badhal S, Brobby NW, Chellani HK, Chopra N, Debata PK, Dube Q, Dua T, Gadama L, Gera R, Hammond CK, Jain S, Kantumbiza F, Kawaza K, Kija EN, Lal P, Mallewa M, Manu MK, Mehta A, Mhango T, Naburi HE, Newton S, Nyanor I, Nyako PA, Oke OJ, Patel A, Phlange-Rhule G, Sehgal R, Singhal R, Wadhwa N, Yiadom AB. Evaluation of the impact of continuous Kangaroo Mother Care (KMC) initiated immediately after birth compared to KMC initiated after stabilization in newborns with birth weight 1.0 to < 1.8 kg on neurodevelopmental outcomes: Protocol for a follow-up study, Trials, 2.728, 24, 1, 265, 10.1186/s13063-023-07192-5.

Bhattacharjee E, Thiruvengadam R, Ayushi, Das C,GARBH-Ini Team, Genetic variants associated with spontaneous preterm birth in women from India: a prospective cohort study, The Lancet Regional Health - Southeast Asia, https://doi.org/10.1016/j.lansea.2023.100190

Gupta V, Singh A, Ganju S, Singh R, Thiruvengadam R, Natchu UCM, Gupta N, Kaushik D, Chanana S, Sharma D, Gosain M, Rao SPN, Pandey N, Gupta A, Singh S, Jhamb U, Lalitha AV, Dinakar C, Pandey AK, Gera R…Bhatnagar S, Severity and mortality associated with COVID-19 among children hospitalised in tertiary care centres in India: a cohort study. The Lancet Regional Health - Southeast Asia, https://doi.org/10.1016/j.lansea.2023.100203

Yadav, M., Pundir, S., Kumari, R., Kumar, A., Venugopal, S.J., Panigrahy, R., Tak, V., Chunchanur, S.K., Gautam, H., Kapil, A., Das, B., Sood, S., Salve, H.R., Malhotra, S., Kant, S., Hari, P., Chaudhuri, S. and Mohapatra, S. (2022c). Virulence gene mutations as a differentiator of clinical phenotypes: insights from community-acquired uropathogenic Escherichia coli. Microbiology (Reading, England), [online] 168(4). doi:https://doi.org/10.1099/mic.0.001161.

Yadav, A.K., Banerjee, S.K., Das, B. and Chaudhary, K. (2022a). Editorial: Systems Biology and Omics Approaches for Understanding Complex Disease Biology. Frontiers in Genetics, 13. doi:https://doi.org/10.3389/fgene.2022.896818.

Visaga, S.A., Kalonia, H., Verma, V., Sinha, S., Singh, S.K., Upadhyay, S., Sahdev, S., Pansari, A., Kumar, R., Bandgar, M., Karanjule, N., Shirumalla, R.K., Morishita, K. and Tandon, R. (2022). Developing Selective FPR2 Agonists can be a Potential Approach to Treat Moderate to Severe Asthma? Journal of Clinical Toxicology, [online] 12(3), pp.1–12. doi:https://doi.org/10.35248/2161-0495.22.12.510.

Thakur, L., Singh, S., Singh, R., Kumar, A., Angrup, A. and Kumar, N. (2022). The potential of 4D’s approach in curbing antimicrobial resistance among bacterial pathogens. Expert Review of Anti-Infective Therapy, [online] 20(11), pp.1401–1412. doi:https://doi.org/10.1080/14787210.2022.2124968.

Surendran, H., Kumar, S., Narasimhaiah, S., Ananthamurthy, A., Varghese, P., D’Souza, G., Medigeshi, G.R. and Pal, R. (2022). SARS‐CoV‐2 infection of human‐induced pluripotent stem cells‐derived lung lineage cells evokes inflammatory and chemosensory responses by targeting mitochondrial pathways. Journal of Cellular Physiology, [online] 237(7). doi:https://doi.org/10.1002/jcp.30755.

Srivastava, M., Mittal, L., Sarmadhikari, D., Singh, V.K., Fais, A., Kumar, A. and Asthana, S. (2023). Template Entrance Channel as Possible Allosteric Inhibition and Resistance Site for Quinolines Tricyclic Derivatives in RNA Dependent RNA Polymerase of Bovine Viral Diarrhea Virus. Pharmaceuticals (Basel, Switzerland), [online] 16(3), p.376. doi:https://doi.org/10.3390/ph16030376.

Srivastava, M., Mittal, L., Kumari, A., Agrahari, A.K., Singh, M., Mathur, R. and Asthana, S. (2022). Characterizing (un)binding mechanism of USP7 inhibitors to unravel the cause of enhanced binding potencies at allosteric checkpoint. Protein Science: A Publication of the Protein Society, [online] 31(9), p.e4398. doi:https://doi.org/10.1002/pro.4398.

Soni, A., Saha, S., Agarwal, A., Rauf, A.R.A., Singh, R.K., Seth, M., Singh, S.K., Sinha, S., Shirumalla, R.K., Marumoto, S. and Tandon, R. (2023). 2-{N-[(2,4,5-trichlorophenoxy) acetyl]-N-methylamino}-3-pyrrolidinepropanamide analogs as potential antagonists of Urotensin II receptor. Journal of Receptor and Signal Transduction Research, [online] 43(1), pp.1–8. doi:https://doi.org/10.1080/10799893.2022.2164306.

Saini, V., Mehta, D., Gupta, S., Kumar, S., Rani, P., Rana, K., Rajput, K., Jain, D., Pal, G., Aggarwal, B., Pal, S., Gupta, S.K., Kumar, Y., Ramu, V.S. and Bajaj, A. (2022). Targeting Vancomycin-Resistant Enterococci (VRE) Infections and Van Operon-Mediated Drug Resistance Using Dimeric Cholic Acid-Peptide Conjugates. Journal of Medicinal Chemistry, [online] 65(22), pp.15312–15326. doi:https://doi.org/10.1021/acs.jmedchem.2c01293.

Roy, S.S., Sharma, S., Rizvi, Z.A., Sinha, D., Gupta, D., Rophina, M., Sehgal, P., Sadhu, S., Tripathy, M.R., Samal, S., Maiti, S., Scaria, V., Sivasubbu, S., Awasthi, A., Harshan, K.H., Jain, S. and Chowdhury, S. (2023). G4-binding drugs, chlorpromazine and prochlorperazine, repurposed against COVID-19 infection in hamsters. Frontiers in Molecular Biosciences, [online] 10. doi:https://doi.org/10.3389/fmolb.2023.1133123.

Rees, C.A., Colbourn, T., Hooli, S., King, C., Lufesi, N., McCollum, E.D., Mwansambo, C., Cutland, C., Madhi, S.A., Nunes, M., Mathew, J.L., Addo-Yobo, E., Chisaka, N., Hassan, M., Hibberd, P.L., Jeena, P.M., Lozano, J.M., MacLeod, W.B., Patel, A., Thea, D.M., et al. (2022). Derivation and validation of a novel risk assessment tool to identify children aged 2–59 months at risk of hospitalised pneumonia-related mortality in 20 countries. BMJ Global Health, [online] 7(4), p.e008143. doi:https://doi.org/10.1136/bmjgh-2021-008143.

Qiao, C., Menon, R., Ahn, K.H., Suzuki, S., Kshetrapal, P., Georgiou, H.M., Mesiano, S. and Zhong, N. (2022). Preterm birth update in Australasia: A report of the international symposium of Preterm Birth International Collaborative-Australasia branch. Frontiers in Pediatrics, 10. doi:https://doi.org/10.3389/fped.2022.903546.

Pradhan, A., Aneja, A., Ghosh, S., Devvanshi, H., Deepika, C., Sahu, R., Ross, C., Kshetrapal, P., Maitra, A. and Das, S. (2023). Association of exosomal miR-96-5p and miR-146a-5p with the disease severity in Dengue virus infection. Journal of Medical Virology, [online] 95(3). doi:https://doi.org/10.1002/jmv.28614.

Paul, A., Das, P.N. and Chatterjee, S. (2022). A minimal model of glucose-stimulated insulin secretion process explores factors responsible for the development of type 2 diabetes. Applied Mathematical Modelling, [online] 108. doi:https://doi.org/10.1016/j.apm.2022.03.035.

Ilyas, M., Purkait, D. and Atmakuri, K. (2022). Genomic islands and their role in fitness traits of two key sepsis-causing bacterial pathogens. Briefings in Functional Genomics, elac051, https://doi.org/10.1093/bfgp/elac051.

Munblit, D., Nicholson, T., Akrami, A., Apfelbacher, C., Chen, J., De Groote, W., Diaz, J.V., Gorst, S.L., Harman, N., Kokorina, A., Olliaro, P., Parr, C., Preller, J., Schiess, N., Schmitt, J., Seylanova, N., Simpson, F., Tong, A., Needham, D.M., Williamson, P.R., et al. (2022). A core outcome set for post-COVID-19 condition in adults for use in clinical practice and research: an international Delphi consensus study. The Lancet Respiratory Medicine, [online] 10(7), pp.715–724. doi:https://doi.org/10.1016/S2213-2600(22)00169-2.

Mittal, L., Tonk, R., Awasthi, A. and Asthana, S. (2022). Traversing through the Dynamic Protein-Protein Interaction Landscape and Conformational Plasticity of PD-1 for Small-Molecule Discovery. Journal of Medicinal Chemistry, [online] 65(8), pp.5941–5953. doi:https://doi.org/10.1021/acs.jmedchem.2c00176.

Misra, P., Kant, S., Guleria, R., Ahmad, M., Mandal, S., Chaturvedi, P.K., Medigeshi, G.R., Meena, S., Rai, S.K., Rahman, A., Sangral, M., Yadav, K., Bairwa, M. and Haldar, P. (2022a). Test concordance and diagnostic accuracy of three serological assays for detection of anti-SARS-CoV-2 antibody: result from a population-based sero-epidemiological study in Delhi. BMC Infectious Diseases, 22(1). doi:https://doi.org/10.1186/s12879-022-07805-5.

Mishra, D., Chandramohan, V., Gosain, M., Juyal, M., Khurana, A., Noble, J.A., Natchu, U., Wadhwa, N., Thiruvengadam, R., Desiraju, B.K. and Bhatnagar, S. (2022). Development of deep learning model to estimate gestationalage in the 2nd and 3rd trimesters of pregnancy: a prospectivecohort study in North India. [online] https://obgyn.onlinelibrary.wiley.com/doi/epdf/10.1002/uog.25022. Available at: https://obgyn.onlinelibrary.wiley.com/doi/epdf/10.1002/uog.25022.

Martin, H., Falconer, J., Addo-Yobo, E., Aneja, S., Arroyo, L.M., Asghar, R., Awasthi, S., Banajeh, S., Bari, A., Basnet, S., Bavdekar, A., Bhandari, N., Bhatnagar, S., Bhutta, Z.A., Brooks, A., Chadha, M., Chisaka, N., Chou, M., Clara, A.W. and Colbourn, T. (2022). Assembling a global database of child pneumonia studies to inform WHO pneumonia management algorithm: Methodology and applications. Journal of Global Health, [online] 12, p.04075. doi:https://doi.org/10.7189/jogh.12.04075.

Mangla, N., Singh, R. and Agarwal, N. (2023). HtpG Is a Metal-Dependent Chaperone Which Assists the DnaK/DnaJ/GrpE Chaperone System of Mycobacterium tuberculosis via Direct Association with DnaJ2. Microbiology Spectrum. doi:https://doi.org/10.1128/spectrum.00312-23.

Maheshwari, D., Saini, K.K., Singh, P.K., Singla, M., Nayak, K., Aggarwal, C.C., Chawla, Y.M., Bajpai, P.K., Kaur, M., Gunisetty, S., Eberhardt, C.S., Nyodu, R., Moore, K.J., Suthar, M.S., Medigeshi, G.R., Anderson, E.J., Lodha, R., Kabra, S.K., Ahmed, R. and Chandele, A. (2022). Contrasting behavior between the three human monocyte subsets in dengue pathophysiology. iScience, 25(6), pp.104384–104384. doi:https://doi.org/10.1016/j.isci.2022.104384.

Maghajothi, S., Subramanian, L., Mani, P., Singh, M., Iyer, D.R., Sharma, S., Khullar, M., Victor, S.M., Asthana, S., Mullasari, A.S. and Mahapatra, N.R. (2022). A common Matrix metalloproteinase 8 promoter haplotype enhances the risk for hypertension via diminished interactions with nuclear factor kappa B. Journal of Hypertension, [online] 40(11), pp.2147–2160. doi:https://doi.org/10.1097/HJH.0000000000003234.

Kumari, P., Dhiman, A., Lavania, S., Sharma, P., Rath, D., Anthwal, D., Gupta, R.K., Kochar, A., Sharma, N., Gadpayle, A.K., Taneja, R.S., Sharma, L., Haldar, S., Sharma, T.K. and Tyagi, J.S. (2022). Assessment of DNA aptamers targeting GlcB and HspX antigens for application in the diagnosis of abdominal tuberculosis. Tuberculosis, 134, p.102206. doi:https://doi.org/10.1016/j.tube.2022.102206.

Khatri, R., Parray, H.A., Agrahari, A.K., Rizvi, Z.A., Kaul, R., Raj, S., Asthana, S., Mani, S., Samal, S., Awasthi, A. and Ahmed, S. (2022a). Designing and characterization of a SARS-CoV-2 immunogen with receptor binding motif grafted on a protein scaffold: An epitope-focused vaccine approach. International Journal of Biological Macromolecules, [online] 209(Part A), pp.1359–1367. doi:https://doi.org/10.1016/j.ijbiomac.2022.04.148.

Jayabal, P., Sampathkumar, V.K., Vinothkumar, A., Mathapati, S., Pannerselvam, B., Achiraman, S. and Venkatasubbu, G.D. (2023). Fabrication of a Chitosan-Based Wound Dressing Patch for Enhanced Antimicrobial, Hemostatic, and Wound Healing Application. ACS Applied Bio Materials, 6(2), pp.615–627. doi:https://doi.org/10.1021/acsabm.2c00903.

Hooli, S., King, C., McCollum, E.D., Colbourn, T., Lufesi, N., Mwansambo, C., Gregory, C.J., Thamthitiwat, S., Cutland, C., Madhi, S.A., Nunes, M.C., Gessner, B.D., Hazir, T., Mathew, J.L., Addo-Yobo, E., Chisaka, N., Hassan, M., Hibberd, P.L., Jeena, P., Lozano, J.M., et al. (2023). In-Hospital Mortality Risk Stratification in Children Under 5 Years Old with Pneumonia with or without Pulse Oximetry: A Secondary Analysis of the Pneumonia REsearch Partnership to Assess WHO REcommendations (PREPARE) Dataset. International Journal of Infectious Diseases, [online] 129. doi:https://doi.org/10.1016/j.ijid.2023.02.005.

Gupta, S., Arora, A., Saini, V., Mehta, D., Khan, M.Z., Mishra, D.K., Yavvari, P.S., Singh, A., Gupta, S.K., Srivastava, A., Kumar, Y., Verma, V., Nandicoori, V.K. and Bajaj, A. (2022). Hydrophobicity of Cholic Acid-Derived Amphiphiles Dictates the Antimicrobial Specificity. ACS biomaterials science & engineering, [online] 8(11), pp.4996–5007. doi:https://doi.org/10.1021/acsbiomaterials.2c00924.

Devvanshi, H., Kachhwaha, R., Manhswita, A., Bhatnagar, S. and Kshetrapal, P. (2022). Immunological Changes in Pregnancy and Prospects of Therapeutic Pla-Xosomes in Adverse Pregnancy Outcomes. Frontiers in Pharmacology, 13. doi:https://doi.org/10.3389/fphar.2022.895254.

Das, S., Singh, J., Shaman, H., Singh, B., Anantharaj, A., Sharanabasava, P., Pandey, R., Lodha, R., Pandey, A.K. and Medigeshi, G.R. (2022). Pre-existing antibody levels negatively correlate with antibody titers after a single dose of BBV152 vaccination. Nature Communications, [online] 13(1). doi:https://doi.org/10.1038/s41467-022-31170-1

Das, S., Jain, S., Ilyas, M., Anand, A., Kumar, S., Sharma, N., Singh, K., Mahlawat, R., Sharma, T.K. and Atmakuri, K. (2021). Development of DNA Aptamers to Visualize Release of Mycobacterial Membrane-Derived Extracellular Vesicles in Infected Macrophages. Pharmaceuticals (Basel, Switzerland), [online] 15(1), p.45. doi:https://doi.org/10.3390/ph15010045.

Das, S. (2022). Analysis of domain organization and functional signatures of trypanosomatid keIF4Gs. Molecular and Cellular Biochemistry, 477(10). doi:https://doi.org/10.1007/s11010-022-04464-7.

Choudhary, E., Sharma, R., Pal, P. and Agarwal, N. (2022). Deciphering the Proteomic Landscape of Mycobacterium tuberculosis in Response to Acid and Oxidative Stresses. ACS Omega, [online] 7(30), pp.26749–26766. doi:https://doi.org/10.1021/acsomega.2c03092.

Chawla, M., Verma, J., Gupta, R. and Das, B. (2022). Antibiotic Potentiators Against Multidrug-Resistant Bacteria: Discovery, Development, and Clinical Relevance. Frontiers in microbiology, [online] 13, p.887251. doi:https://doi.org/10.3389/fmicb.2022.887251.

Chattopadhyay, G., Bhasin, M., Ahmed, S., Gosain, T.P., Ganesan, S., Das, S., Thakur, C., Chandra, N., Singh, R. and Varadarajan, R. (2022). Functional and Biochemical Characterization of the MazEF6 Toxin-Antitoxin System of Mycobacterium tuberculosis. Journal of Bacteriology, [online] 204(4), p.e0005822. doi:https://doi.org/10.1128/jb.00058-22.

Bhanot, A., Lunge, A., Kumar, N., Kidwai, S., Singh, R., Sundriyal, S. and Agarwal, N. (2023). Discovery of small molecule inhibitors of Mycobacterium tuberculosis ClpC1: SAR studies and antimycobacterial evaluation. Results in Chemistry, 5, p.100904. doi:https://doi.org/10.1016/j.rechem.2023.100904.

4. Aggarwal, S., Raj, A., Kumar, D., Dash, D. and Yadav, A.K. (2022). False discovery rate: the Achilles’ heel of proteogenomics. Briefings in Bioinformatics, [online] 23(5), p.bbac163. doi:https://doi.org/10.1093/bib/bbac163.

Agarwal, S., Kaur, S., Asuru, T.R., Joshi, G., Shrimali, N.M., Singh, A., Singh, O.R., Srivastva, P., Shrivastava, T., Vrati, S., Surjit, M. and Guchhait, P. (2022c). Dietary alpha‐ketoglutarate inhibits SARS CoV‐2 infection and rescues inflamed lungs to restore O 2 saturation by inhibiting pAkt. Clinical and Translational Medicine, [online] 12(9). doi:https://doi.org/10.1002/ctm2.1041.

Agarwal, N., Sharma, S., Pal, P., Kaushal, P.S. and Kumar, N. (2022b). Era, a GTPase-like protein of the Ras family, does not control ribosome assembly in Mycobacterium tuberculosis. Microbiology (Reading), 168(8). doi:https://doi.org/10.1099/mic.0.001200.

Agarwal, A., Alam, Mohd.F., Basu, B., Pattanayak, S., Asthana, S., Syed, G.H., Kalia, M. and Vrati, S. (2022a). Japanese Encephalitis Virus NS4A Protein Interacts with PTEN-Induced Kinase 1 (PINK1) and Promotes Mitophagy in Infected Cells. Microbiology Spectrum, 10(3). doi:https://doi.org/10.1128/spectrum.00830-22.

Bhawna, Gujjar S, Venkataprasanna K.S, Tiwari S, Sharma JC, Sharma P, Pujani M, Pandey AK, Abnave P, Kalyanasundaram D, Mathapati S, Stabilized human amniotic membrane for enhanced sustainability and  biocompatibility, Process Biochemistry, Volume 129, June 2023, Pages 67-75, https://doi.org/10.1016/j.procbio.2023.03.009.

Nii T, Maeda Y, Motooka D, Naito M, Matsumoto Y, Ogawa T, Oguro-Igashira E, Kishikawa T, Yamashita M, Koizumi S, Kurakawa T, Okumura R, Kayama H, Murakami M, Sakaguchi T, Das B, Nakamura S, Okada Y, Kumanogoh A, Takeda K (2023), Genomic repertoires linked with pathogenic potency of arthritogenic Prevotella copri isolated from the gut of rheumatoid arthritis patients. Annals of the Rheumatic Diseases. http://dx.doi.org/10.1136/ard-2022-222881

Lekshmi N, Chakraborty M, Kumari S, Paul D, Das B (2023), β-Lactam potentiators to re-sensitize resistant pathogens: Discovery, development, clinical use and the way forward, Frontiers in Microbiol. 13:1092556. doi.org/10.3389/fmicb.2022.1092556 .

Das B^#, Chowdhury G^#, Pant A, Kumar S, Mukherjee P, Koley H, Okamoto K, Ramamurthy T, Dutta S, Mukhopadyay A (2023), Genomic Insights into An Extensively Drug Resistant Pseudomonas aeruginosa Isolated from Diarrhea Case in Kolkata, India. Future Microbiology , doi.org/10.2217/fmb-2022-0140

 Panwar S, Kumari S, Verma J, Bakshi S, Lekshmi N, Paul D, Das B. (2023), Toxin linked mobile genetic elements in major enteric bacterial pathogens. Gut Microbiome. doi.org/10.1017/gmb.2023.2 

Das B*, Mahajan D, Rakonjac J (2023). Editorial: Antibiotic Potentiators Against Drug-Resistant Pathogens: Discovery, Development and Clinical Applications. Frontiers in Microbiology. doi.org/10.3389/fmicb.2023.1173906

Sneha Raj,Preeti Vishwakarma,Shikha Saxena,Varun Kumar,Ritika Khatri,Amit Kumar,Mrityunjay Singh,Surbhi Mishra,Shailendra Asthana,Shubbir Ahmed andSweety Samal,Intradermal Immunization of Soluble Influenza HA Derived from a Lethal Virus Induces High Magnitude and Breadth of Antibody Responses and Provides Complete Protection In Vivo, Vaccines 2023, 11(4), 780; https://doi.org/10.3390/vaccines11040780 (registering DOI) - 31 Mar 2023.

Deshpande S, Ansari MY, Sutar J, Das P, Hingankar N, Mukherjee S, Jayal P, Singh S, Anantharaj A, Singh J, Chattopadhyay S, Raghavan S, Gosain M, Chauhan S, Shrivas S, Prasad C, Chauhan S, Sharma N, Jana P, Thiruvengadam R, Kshetrapal P, Wadhwa N, Das B, Batra G, Medigeshi G, Sok D, Bhatnagar S, Garg PK, Bhattacharya J. Ancestral SARS-CoV-2-Driven Antibody Repertoire Diversity in an Unvaccinated Individual Correlates with Expanded Neutralization Breadth. Microbiol Spectr. 9.043, e0433222, 10.1128/spectrum.04332-22.

Rizvi ZA, Babele P, Madan U, Sadhu S, Tripathy MR, Goswami S, Mani S, Dikshit M, Awasthi A. Pharmacological potential of Withania somnifera (L.) Dunal and Tinospora cordifolia (Willd.) Miers on the experimental models of COVID-19, T cell differentiation, and neutrophil functions. Front Immunol. 8.787, 14, 1138215, 10.3389/fimmu.2023.1138215.

Agrahari AK, Srivastava M, Singh M, Asthana S. SARS-CoV-2 envelope protein attain Kac mediated dynamical interaction network to adopt 'histone mimic' at BRD4 interface. J Biomol Struct Dyn. 5.235, 1-15, 10.1080/07391102.2023.2188430.

Sarmah DT, Gujjar S, Mathapati S, Bairagi N, Chatterjee S, Identification of critical autophagy-related proteins in diabetic retinopathy: A multi-dimensional computational study. Gene, 3.913, 866, 147339, 10.1016/j.gene.2023.147339

Gupta S, Kumawat S, Fatima Z, Priya, Chatterjee S. Quantitative analysis of the bioenergetics of Mycobacterium tuberculosis along with Glyoxylate cycle as a drug target under inhibition of enzymes using Petri net, Comput Biol Chem. 3.737, 104, 107828, 10.1016/j.compbiolchem.2023.107828.

Singh J, Anantharaj A, Panwar A, Rani C, Bhardwaj M, Kumar P, Chattopadhyay P, Devi P, Maurya R, Mishra P, Pandey AK, Pandey R, Medigeshi GR, BA.1, BA.2 and BA.2.75 variants show comparable replication kinetics, reduced impact on epithelial barrier and elicit cross-neutralizing antibodies, PLoS Pathog. 7.01, https://doi.org/10.1371/journal.ppat.1011196.

Sarmah DT, Parveen R, Kundu J, Chatterjee S, Latent tuberculosis and computational biology: A less-talked affair. Prog Biophys Mol Biol, 3.667, 178,17-31, 10.1016/j.pbiomolbio.2023.02.002

Halder S, Chatterjee S, Bistability regulates TNFR2-mediated survival and death of T-regulatory cells. J Biol Phys, 1.365, 49, 1, 95-119, 10.1007/s10867-023-09625-3

Kaushik SR, Sahu S, Guha H, Saha S, Das R, Kupa RU, Kapfo W, Deka T, Basumatary R, Thong A, Dasgupta A, Goswami B, Pandey AK, Saikia L, Khamo V, Das A, Nanda RK. Low circulatory Fe and Se levels with a higher IL-6/IL-10 ratio provide nutritional immunity in tuberculosis. Front Immunol.  7.561, 13, 985538, 10.3389/fimmu.2022.985538

Kaur L, Sundrani D, Dave K, Randhir K, Mehendale S, Bayyana S, Kalyanaraman K, Chandak GR, Joshi S.  Hypoxia Inducible Factors (HIF1α and HIF3α) are differentially methylated in preeclampsia placentae and are associated with birth outcomes. Mol Cell Biochem. 3.842, 10.1007/s11010-023-04661-y.

Augustin L, Agarwal N. Designing a Cas9/gRNA-assisted quantitative Real-Time PCR (CARP) assay for identification of point mutations leading to rifampicin resistance in the human pathogen Mycobacterium tuberculosis. Gene, 3.913, 857, 147173, 10.1016/j.gene.2023.147173

Kumari A, Mittal L, Srivastava M, Pathak DP, Asthana S. Deciphering the Structural Determinants Critical in Attaining the FXR Partial Agonism. J Phys Chem B. 10.1021/acs.jpcb.2c06325. 

Biofilm Inhibiting Nanocomposite Coatings - A promising alternative to combat surgical site infections. Ramay Patra, …. Susmita Chaudhuri#, Prashant Garg#, R SubasriJ Coat Technol Res (2022).  https://doi.org/10.1007/s11998-022-00642-w  (# Co-corresponding).

Biofilm Inhibiting Nanocomposite Coatings on Surgical Sutures: Durability and Mechanistic Insights. R Subasri, … Susmita Chaudhuri#, Prashant Garg# (# Co-corresponding). J Coat Technol Res (2022). https://doi.org/10.1007/s11998-022-00678-y.

Biofilm inhibiting nanocomposite coatings on stainless steel surgical instruments: a possible strategy to prevent TASS. Birru Bhaskar, Ramay Patra, ….Susmita Chaudhuri#, R. Subasri# & Prashant Garg#. 2022, Journal of Coatings Technology and Research, DOI:10.1007/s11998-022-00689-9  (# Co-corresponding)

Heavy Metal and Imidazole Rich Pharmaceutical Effluent Increases AMR Traits and Induces Microbial Persistence Through VBNC Formation. 2022. International journal of infectious diseases 116:S10; DOI: 10.1016/j.ijid.2021.12.024

Formic Acid, an Organic Acid Food Preservative, Induces Viable-But-Non-Culturable (VBNC) State and Triggers New AMR Traits in A. baumanii and K. pneumoniae. Manisha Yadav,….Susmita Chaudhuri. Frontiers in Microbiology, 2022, DOI:10.3389/fmicb.2022.966207

Antibiotic resistance of uropathogens among the community-dwelling pregnant and nonpregnant female: a step towards antibiotic stewardship. Sarita Mohapatra,….Susmita Chaudhuri….Harish Salve. BMC Infectious Diseases. 22, 939 (2022). https://doi.org/10.1186/s12879-022-07914-1.

Kumar D, Singhal C, Yadav M, Joshi P, Patra P, Tanwar S, Das A, Kumar Pramanik S, Chaudhuri S.  Colistin Potentiation in Multidrug Resistant Acinetobacter baumannii by a Non-cytotoxic Guanidine Derivative of Silver. Frontiers in Microbiology, 2022, Volume 13 - 2022. https://doi.org/10.3389/fmicb.2022.1006604.

Khatri R, Siddqui G, Sadhu S, Maithil V, Vishwakarma P, Lohiya B, Goswami A, Ahmed S, Awasthi A, Samal S. Intrinsic D614G and P681R/H mutations in SARS-CoV-2 VoCs Alpha, Delta, Omicron and viruses with D614G plus key signature mutations in spike protein alters fusogenicity and infectivity. Med Microbiol Immunol. 2022 Dec 30:1–20. doi: 10.1007/s00430-022-00760-7.

Kumar S, Sarmah DT, Asthana S, Chatterjee S,  konnect2prot: A web application to explore the protein properties in a functional protein-protein interaction network. Bioinformatics, btac815, 10.1093/bioinformatics/btac815.

Saxena R, Sharma P, Kumar S, Agrawal N, Sharma SK, Awasthi A. Modulation of mitochondria by viral proteins. Life Sci, 121271, 10.1016/j.lfs.2022.121271.

Parray HA, Narayanan N, Garg S, Rizvi ZA, Shrivastava T, Kushwaha S, Singh J, Murugavelu P, Anantharaj A, Mehdi F, Raj N, Singh S, Dandotiya J, Lukose A, Jamwal D, Kumar S, Chiranjivi A, Dhyani S, Mishra N, Kumar S, Jakhar K, Sonar S, Panchal AK, Tripathy MR, Chowdhury SR, Ahmed S, Samal S, Mani S, Bhattacharyya S, Das S, Sinha S, Luthra K, Batra G, Sehgal D, Medigeshi GR, Sharma C, Awasthi A, Garg PK, Nair DT, Kumar R. A broadly neutralizing monoclonal antibody overcomes the mutational landscape of emerging SARS-CoV-2 variants of concern. PLoS Pathog. 18, 12, e1010994, 10.1371/journal.ppat.1010994.

Maddipati VC, Mittal L, Kaur J, Rawat Y, Koraboina CP, Bhattacharyya S, Asthana S, Gundla R.  Discovery of non-nucleoside oxindole derivatives as potent inhibitors against dengue RNA-dependent RNA polymerase. Bioorg Chem, 131, 106277, 10.1016/j.bioorg.2022.106277.

Tiwari P, Gosain TP, Chugh S, Singh M, Sankhe GD, Arora G, Kidwai S, Agarwal S, Saini DK, Singh R. Exopolyphosphatases PPX1 and PPX2 from Mycobacterium tuberculosis regulate dormancy response and pathogenesis. Microb Pathog. 173(Pt B), 105885, 10.1016/j.micpath.2022.105885.

Thuluva S, Paradkar V, Gunneri S, Yerroju V, Mogulla RR, Suneetha PV, Turaga K, Kyasani M, Manoharan SK, Adabala S, Sri Javvadi A, Medigeshi G, Singh J, Shaman H, Binayke A, Zaheer A, Awasthi A, Narang M, Nanjappa P, Mahantshetti N, Swarup Garg B, Pandey AK. Safety, tolerability and immunogenicity of Biological E's CORBEVAX™ vaccine in children and adolescents: A prospective, randomised, double-blind, placebo controlled, phase-2/3 study.  Vaccine, S0264-410X, 22, 01308-1, 10.1016/j.vaccine.2022.10.045

Gosain, T.P., Singh,M., Singh, C., Thakur, K. and Singh, R*. Disruption of MenT2 toxin impairs the growth of Mycobacterium tuberculosis in guinea pigs. Microbiology, 168 (11) 2022, doi: 10.1099/mic.0.001246.

 Singh, P., Rawat, S., Agrahari, A.K., Singh, M., Chugh, S., Gurcha, S., Singh, A., Abrahams, K., Besra, G.S., Asthana, S., Rawat, D.S. and Singh, R*. NSC19723, a Thiacetazone-like Benzaldehyde Thiosemicarbazone Improves the Efficacy of TB Drugs In Vitro and In Vivo. Microbiology Spectrum, 2022, doi:10.1128/spectrum.02592-22.

Ahmed, S., Chattopadhyay, G., Manjunath, K., Bhasin, M., Singh, N., Rasool, M., Das, S., Rana, V., Khan, N., Mitra, D., Asok, A., Singh, R. and Varadarajan, R. Combining cysteine scanning with chemical labeling to map protein-protein interactions and infer bound structure in an intrinsically disordered region. Frontiers in Molecular Biosciences, 2022, https://doi.org/10.3389/fmolb.2022.997653.

Sindhu, G., Kholiya R., Kidwai, S., Singh, P., Singh, R., and Rawat, D.S. Design and synthesis of benzimidazole derivatives as antimycobacterial agents. J Biochem Mol Toxicol, 2022, 36(9): e23123, doi: 10.1002/jbt.23123.

Mehdi F, Chowdhury SR, Yadav S, Kansana JS, Sinha SK, Das SJ, Lodha R, Prakash JAJ, Lamminimäki U, Batra G. Generation of a Large Repertoire of Monoclonal Antibodies against Dengue Virus NS1 Antigen and the Development of a Novel NS1 Detection Enzyme-Linked Immunosorbent Assay. J Immunol, 209, 10, 2054-2067, 10.4049/jimmunol.2200251.

Chauhan P, Datta I, Dhiman A, Shankar U, Kumar A, Vashist A, Sharma TK, Tyagi JS.  DNA Aptamer Targets Mycobacterium tuberculosis DevR/DosR Response Regulator Function by Inhibiting Its Dimerization and DNA Binding Activity. ACS Infect Dis. 10.1021/acsinfecdis.2c00414.

Binayke A, Zaheer A, Dandotiya J, Gupta SK, Mani S, Tripathy MR, Madan U, Shrivastava T, Kumar Y, Pandey AK, Rathore DK, Awasthi A. Proinflammatory Innate Cytokines and Distinct Metabolomic Signatures Shape the T Cell Response in Active COVID-19. Vaccines (Basel), 10, 10, 1762, 10.3390/vaccines10101762

Awasthi D, Nagarkoti S, Sadaf S, Aggarwal H, Gupta SK, Chandra T, Kumar Y, Kumar S, Dikshit M. Modulations in human neutrophil metabolome and S-glutathionylation of glycolytic pathway enzymes during the course of extracellular trap formation. Biochim Biophys Acta Mol Basis Dis. 166581, 10.1016/j.bbadis.2022.166581.

Kasarla SS, Borse SP, Kumar Y, Sharma N, Dikshit M., In vitro effect of Withania somnifera, AYUSH-64, and remdesivir on the activity of CYP-450 enzymes: Implications for possible herb-drug interactions in the management of COVID-19. Front Pharmacol. 973768, 13, 10.3389/fphar.2022.973768,

Self A, Chen Q, Desiraju BK, Dhariwal S, Gleed AD, Mishra D, Thiruvengadam R, Chandramohan V, Craik R, Wilden E, Khurana A; CALOPUS Study Group, Bhatnagar S, Papageorghiou AT, Noble JA. Developing Clinical Artificial Intelligence for Obstetric Ultrasound to Improve Access in Underserved Regions: Protocol for a Computer-Assisted Low-Cost Point-of-Care UltraSound (CALOPUS) Study. JMIR Res Protoc, 11, 9, e37374, 10.2196/37374

Gleed AD, Chen Q, Jackman J, Mishra D, Chandramohan V, Self A, Bhatnagar S, Papageorghiou AT, Noble JA. , Automatic Image Guidance for Assessment of Placenta Location in Ultrasound Video Sweeps.  Ultrasound Med Biol., S0301-5629, 00529-4, 22,  10.1016/j.ultrasmedbio.2022.08.006

Halder S, Ghosh S, Chattopadhyay J, Chatterjee S. Understanding noise in cell signalling in the prospect of drug-targets. J Theor Biol, 111298, 555, 10.1016/j.jtbi.2022.111298.

Rizvi ZA, Babele P, Sadhu S, Madan U, Tripathy MR, Goswami S, Mani S, Kumar S, Awasthi A, Dikshit M.  Prophylactic treatment of Glycyrrhiza glabra mitigates COVID-19 pathology through inhibition of pro-inflammatory cytokines in the hamster model and NETosis. Front Immunol, 13, 945583, 10.3389/fimmu.2022.945583

Kumar CS, Singh B, Rizvi ZA, Parray HA, Verma JK, Ghosh S, Mukhopadhyay A, Awasthi A, Shrivastava T, Banerjee M. Virus-Like Particles of SARS-CoV-2 as Virus Surrogates: Morphology, Immunogenicity, and Internalization in Neuronal Cells. ACS Infect Dis,  acsinfecdis.2c00217, 10.1021/acsinfecdis.2c00217.

Kumar S, Mehrotra T, Talukdar D, Verma J, Chandra Karmakar B, Paul S, Chaudhuri S, Kumari Pragasam A, Bakshi S, Kumari S, Chawla M, Purohit A, Porey Karmakar S, Mutreja A, Banerjee S, Ray A, Ramamurthy T, Mukhopadyay AK, Das B., Region-specific genomic signatures of multidrug-resistant Helicobacter pylori isolated from East and South India.Gene, 847, 146857, 10.1016/j.gene.2022.146857.

Agarwal S, Kaur S, Asuru TR, Joshi G, Shrimali NM, Singh A, Singh ON, Srivastva P, Shrivastava T, Vrati S, Surjit M, Guchhait P. Dietary alpha-ketoglutarate inhibits SARS CoV-2 infection and rescues inflamed lungs to restore O2 saturation by inhibiting pAkt. Clin Transl Med. 12, 9, e1041, 10.1002/ctm2.1041.

Dey A, Yadav M, Kumar D, Dey AK, Samal S, Tanwar S, Sarkar D, Pramanik SK, Chaudhuri S, Das A., A combination therapy strategy for treating antibiotic resistant biofilm infection using a guanidinium derivative and nanoparticulate Ag(0) derived hybrid gel conjugate. Chem Sci, 13, 34, 10103-10118, 10.1039/d2sc02980d.

Kumar P, Soory A, Mustfa SA, Sarmah DT, Devvanshi H, Chatterjee S, Bossis G, Ratnaparkhi GS, Srikanth CV. Bidirectional regulation between AP-1 and SUMOylation pathway genes modulates inflammatory signaling during Salmonella infection.J Cell Sci. , 135, 16, jcs260096, 10.1242/jcs.260096.

Misra P, Kant S, Guleria R, Rai SK, Jaiswal A, Mandal S, Medigeshi GR, Ahmad M, Rahman A, Sangral M, Yadav K, Bairwa M, Haldar P, Kumar P.  Antibody Response to SARS-CoV-2 among COVID-19 Confirmed Cases and Correlates with Neutralizing Assay in a Subgroup of Patients in Delhi National Capital Region, India, Vaccines (Basel), 10, 8, 10.3390/vaccines10081312.

Garg S, Raj N, Lukose A, Jamwal D, Parray HA, Kumar S, Dhyani S, Jakhar K, Sonar S, Tiwari M, Reema, Mani S, Bhattacharyya S, Sharma C, Shrivastava T, Kumar R. Characterization of a broadly cross reactive tetravalent human monoclonal antibody, recognizing conformational epitopes in receptor binding domain of SARS-CoV-2. 3 Biotech, 12, 9, 202,10.1007/s13205-022-03272-6.

Khatri R, Parray HA, Siddiqui G, Chiranjivi AK, Raj S, Kaul R, Maithil V, Samal S, Ahmed S. Biophysical and Biochemical Characterization of the Receptor Binding Domain of SARS-CoV-2 Variants. Protein J. 2022 Oct;41(4-5):457-467. doi: 10.1007/s10930-022-10073-6.

Jayesh Kumar Sevak, Suchitra D. Gopinath, Generation of Mesenchymal Stem Cells from Human Umbilical Cord Tissue and their Differentiation into the Skeletal Muscle Lineage, J. Vis. Exp. (JoVE), e63725,doi:10.3791/63725 (2022).

Das, S.; Jain, S.; Ilyas, M.; Anand, A.; Kumar, S.; Sharma, N.;Singh, K.; Mahlawat, R.; Sharma, T.K.;Atmakuri, K. Development of DNA Aptamers to Visualize Release of Mycobacterial Membrane-Derived Extracellular Vesicles in Infected Macrophages. Pharmaceuticals 2022, 15, 45. https://doi.org/10.3390/ ph15010045

Singh N, Sharma N, Singh P, Pandey M, Ilyas M, Sisodiya L, Choudhury T, Gosain TP, Singh R and Atmakuri K. HupB, a nucleoid-associated protein is critical for survival of Mycobacterium tuberculosis under host-mediated stresses and for enhanced tolerance to key first-line antibiotics. Frontiers in Microbiology 2022. doi: 10.3389/fmicb.2022.937970

Thuluva S, Paradkar V, Gunneri SR, Yerroju V, Mogulla R, Turaga K, Kyasani M, Manoharan SK, Medigeshi G, Singh J, Shaman H, Singh C, Rao A V. Evaluation of safety and immunogenicity of receptor-binding domain-based COVID-19 vaccine (Corbevax) to select the optimum formulation in open-label, multicentre, and randomised phase-1/2 and phase-2 clinical trials. EBioMedicine, 83, 104217, 10.1016/j.ebiom.2022.104217

Chaudhary D, Singh A, Marzuki M, Ghosh A, Kidwai S, Gosain TP, Chawla K, Gupta SK, Agarwal N, Saha S, Kumar Y, Thakur KG, Singhal A, Singh R. Identification of small molecules targeting homoserine acetyl transferase from Mycobacterium tuberculosis and Staphylococcus aureus.Sci Rep, 12, 1, 13801, 10.1038/s41598-022-16468-w.

Bugga P, Mohammed SA, Alam MJ, Katare P, Meghwani H, Maulik SK, Arava S, Banerjee SK. Empagliflozin prohibits high-fructose diet-induced cardiac dysfunction in rats via attenuation of mitochondria-driven oxidative stress. Life Sci. 307, 120862, 10.1016/j.lfs.2022.120862.

Siddqui G, Yadav N, Vishwakarma P, Thomas J, Khatri R, Kumar A, Tripathi A, Pramod RK, Vrati S, Samal S. Japanese encephalitis virus induces vasodilation and severe lethality in adult and aged AG129 mice lacking alpha, beta and gamma interferon receptors. Virus Research, 319, 198884, 10.1016/j.virusres.2022.198884

Chiranjivi AK, Kumar D, Kumar R, Parray HA, Ahmed S, Kumar CS, Shrivastava T, Banerjee M, Prasad BVV, Das S. Generation of soluble, cleaved, well-ordered, native-like dimers of dengue virus 4 envelope protein ectodomain (sE) suitable for vaccine immunogen design. Int J Biol Macromol, 09-07-2022, 217, 19-26, 10.1016/j.ijbiomac.2022.07.028.

Pant A, Maiti TK, Mahajan D, Das B. Human Gut Microbiota and Drug Metabolism. Microb Ecol, 23-07-2022, 42005, 10.1007/s00248-022-02081.

Agrahari AK, Dikshit M, Asthana S. Crystallographic mining of ASK1 regulators to unravel the intricate PPI interfaces for the discovery of small molecule. Comput Struct Biotechnol J. 11.07.2022, 20, 3734-3754, 10.1016/j.csbj.2022.07.008 

Ramamurthy T, Pragasam AK, Taylor-Brown A, Will RC, Vasudevan K, Das B, Srivastava SK, Chowdhury G, Mukhopadhyay AK, Dutta S, Veeraraghavan B, Thomson NR, Sharma NC, Nair GB, Takeda Y, Ghosh A, Dougan G, Mutreja A. Vibrio cholerae O139 genomes provide a clue to why it may have failed to usher in the eighth cholera pandemic. 13, 1, 13864, Nat Microbiol., 10.1038/s41467-022-31391-4.

Vikkurthi R, Ansari A, Pai AR, Jha SN, Sachan S, Pandit S, Nikam B, Kalia A, Jit BP, Parray HA, Singh S, Kshetrapal P, Wadhwa N, Shrivastava T, Coshic P, Kumar S, Sharma P, Sharma N, Taneja J, Pandey AK, Sharma A, Thiruvengadam R, Grifoni A, Weiskopf D, Sette A, Bhatnagar S, Gupta N. Inactivated whole-virion vaccine BBV152/Covaxin elicits robust cellular immune memory to SARS-CoV-2 and variants of concern. Nat Microbiol. 2022 Jun 9. doi: 10.1038/s41564-022-01161-5. Nat Microbiol. 

Pandey M, Tiwari S, Johri S, Biswal BK, Sharma C, Pandey AK. Investigating a putative transcriptional regulatory protein encoded by Rv1719 gene of Mycobacterium tuberculosis. 41,3, 424-433, Protein J. 10.1007/s10930-022-10062-9

Hingankar N, Deshpande S, Das P, Rizvi ZA, Wibmer CK, Mashilo P, Ansari MY, Burns A, Barman S, Zhao F, Mukherjee S, Torres JL, Chattopadhyay S, Mehdi F, Sutar J, Rathore DK, Pargai K, Singh J, Sonar S, Jakhar K, Dandotiya J, Bhattacharyya S, Mani S, Samal S, Singh S, Kshetrapal P, Thiruvengadam R, Batra G, Medigeshi G, Ward AB, Bhatnagar S, Awasthi A, Sok D, Bhattacharya J. A combination of potently neutralizing monoclonal antibodies isolated from an Indian convalescent donor protects against the SARS-CoV-2 Delta variant. 18, 4, e1010465, PLoS Pathog, 10.1371/journal.ppat.1010465.

Meena J, Singhvi P, Srichandan S, Dandotiya J, Verma J, Singh M, Ahuja R, Panwar N, Wani TQ, Khatri R, Siddiqui G, Gupta A, Samal S, Panda AK. RBD decorated PLA nanoparticle admixture with aluminum hydroxide elicit robust and long lasting immune response against SARS-CoV-2. 176, 43-53, Eur J Pharm Biopharm. 10.1016/j.ejpb.2022.05.008.

Sharma S, Tyagi R, Srivastava M, Rani K, Kumar D, Asthana S, Raj VS. Identification and validation of potent inhibitor of Escherichia coli DHFR from MMV pathogen box. J Biomol Struct Dyn. 10.1080/07391102.2022.2080113.

Kumar A, Singh S, Gupta SK, Kumar S, Kumar S, Singh R, Thakur L, Kumar M, Kapil A, Kumar Y, Kumar N. Identification of metabolite extraction method for targeted exploration of antimicrobial resistance associated metabolites of Klebsiella pneumoniae. 12, 1, 8939, Sci Rep, 10.1038/s41598-022-12153-0.

Mittal L, Tonk R, Awasthi A, Asthana S. Traversing through the Dynamic Protein-Protein Interaction Landscape and Conformational Plasticity of PD-1 for Small-Molecule Discovery. J Med Chem., 14.04.2022.

Das S, Kumar Y, Sharma S, Ray R, Arava S, Seth S, Agarwal A, Sharma G. , An Untargeted LC-MS based approach for identification of altered metabolites in blood plasma of rheumatic heart disease patients., Sci Rep., 4.996, 12, 1, 5238, 5238

Bir R, Gautam H, Arif N, Chakravarti P, Verma J, Banerjee S, Tyagi S, Mohapatra S, Sood S, Dhawan B, Chaudhry R, Kapil A, Das BK, Das B., Analysis of colistin resistance in carbapenem-resistant Enterobacterales and XDR Klebsiella pneumoniae., Ther Adv Infect Dis. , 2.7, 9, , 20499361221080600, 10.1177/20499361221080650

Varma DA, Singh M, Wakode S, Dinesh NE, Vinaik S, Asthana S, Tiwari M., Structure-based pharmacophore mapping and virtual screening of natural products to identify polypharmacological inhibitor against c-MET/EGFR/VEGFR-2. , J Biomol Struct Dyn., 5.23, , , 1-15, 10.1080/07391102.2022.2042388. 

Mehdiratta K, Singh S, Sharma S, Bhosale RS, Choudhury R, Masal DP, Manocha A, Dhamale BD, Khan N, Asokachandran V, Sharma P, Ikeh M, Brown AC, Parish T, Ojha AK, Michael JS, Faruq M, Medigeshi GR, Mohanty D, Reddy DS, Natarajan VT, Kamat SS, Gokhale RS., Kupyaphores are zinc homeostatic metallophores required for colonization of Mycobacterium tuberculosis., Proc Natl Acad Sci U S A. , 12.78, 119, 8, e2110293119, 10.1073/pnas.2110293119.

Soundararajan D, Ramana LN, Shankaran P, Krishnan UM. Nanoparticle-based strategies to target HIV-infected cells. , Colloids Surf B Biointerfaces. , 5.268, 213, , 112405, 10.1016/j.colsurfb.2022.112405. 

Purushotham N, Singh M, Paramesha B, Kumar V, Wakode S, Banerjee SK, Poojary B, Asthana S. Design and synthesis of amino acid derivatives of substituted benzimidazoles and pyrazoles as Sirt1 inhibitors.  RSC Adv., 4.036, 12, 7, 3809-3827, 10.1039/d1ra06149f.

Aggarwal H, Pathak P, Singh V, Kumar Y, Shankar M, Das B, Jagavelu K, Dikshit M., Vancomycin-Induced Modulation of Gram-Positive Gut Bacteria and Metabolites Remediates Insulin Resistance in iNOS Knockout Mice. , Front Cell Infect Microbiol., 5.79, 11, , 795333, 10.3389/fcimb.2021.795333.

Aggarwal H, Pathak P, Singh V, Kumar Y, Shankar M, Das B, Jagavelu K, Dikshit M., Vancomycin-Induced Modulation of Gram-Positive Gut Bacteria and Metabolites Remediates Insulin Resistance in iNOS Knockout Mice. , Front Cell Infect Microbiol., 5.79, 11, , 795333, 10.3389/fcimb.2021.795333.

Dhochak N, Agrawal T, Shaman H, Khan NA, Kumar P, Kabra SK, Medigeshi GR, Lodha R., Humoral cross-reactivity towards SARS-CoV-2 in young children with acute respiratory infection with low-pathogenicity coronaviruses., J Clin Virol Plus., 3.168, 2, 1, 100061, 10.1016/j.jcvp.2022.100061.

Kaur J, Rawat Y, Sood V, Periwal N, Rathore DK, Kumar S, Kumar N, Bhattacharyya S., Replication of Dengue Virus in K562-Megakaryocytes Induces Suppression in the Accumulation of Reactive Oxygen Species., Front Microbiology, 5.64, 12, , 784070, 10.3389/fmicb.2021.784070.

Sankaradoss A, Jagtap S, Nazir J, Moula SE, Modak A, Fialho J, Iyer M, Shastri JS, Dias M, Gadepalli R, Aggarwal A, Vedpathak M, Agrawal S, Pandit A, Nisheetha A, Kumar A, Bordoloi M, Shafi M, Shelar B, Balachandra SS, Damodar T, Masika MM, Mwaura P, Anzala O, Muthumani K, Sowdhamini R, Medigeshi GR, Roy R, Pattabiraman C, Krishna S, Sreekumar E., Immune profile and responses of a novel dengue DNA vaccine encoding an EDIII-NS1 consensus design based on Indo-African sequences., Mol. Ther, 11.45, 30, 5, 2058-2077, 10.1016/j.ymthe.2022.01.013. 

Rizvi ZA, Dalal R, Sadhu S, Binayke A, Dandotiya J, Kumar Y, Shrivastava T, Gupta SK, Agarwal S, Tripathy MR, Rathore DK, Yadav AK, Medigeshi GR, Pandey AK, Samal S, Ashtana S, Awasthi A. Golden Syrian hamster as a model to study cardiovascular complications associated with SARS-CoV-2 infection. , eLife, 8.14, 11, , e73522, 10.7554/eLife.73522

Anantharaj A, Gujjar S, Verma N, Khan NA, Shaman H, Sharanabasava P, Das A, Pandey R, Pandey AK, Medigeshi GR., Resolution of viral load in mild COVID-19 patients is associated with both innate and adaptive immune responses., J Clin Virol. , 3.168, 146, , 105060, 10.1016/j.jcv.2021.105060.

Venkataprasanna KS, Prakash J, Mathapati SS, Bharath G, Banat F, Venkatasubbu GD. Development of chitosan/poly (vinyl alcohol)/graphene oxide loaded with vanadium doped titanium dioxide patch for visible light driven antibacterial activity and accelerated wound healing application., Int J Biol Macromol. , 8.025, 193, Pt B, 1430-1448, 10.1016/j.ijbiomac.2021.10.207.

Gupta P, Kumar N, Garg M., Emerging roles of autophagy in the development and treatment of urothelial carcinoma of the bladder., Expert Opin Ther Targets., 6.902, 25, 9, 787-797, 10.1080/14728222.2021.1992384.

Haider M, Dholakia D, Panwar A, Garg P, Gheware A, Singh D, Singhal K, Burse SA, Kumari S, Sharma A, Ray A, Medigeshi GR, Sharma U, Prasher B, Mukerji M., Transcriptome analysis and connectivity mapping of Cissampelos pareira L. provides molecular links of ESR1 modulation to viral inhibition., Sci Rep., 4.996, 11, 1, 20095, 10.1038/s41598-021-99444-0. 

Panwar A, Wangchuk J, Kar M, Lodha R, Medigeshi GR. , Dengue virus replication enhances labile zinc pools by modulation of ZIP8.  Cell Microbiol., 3.715, 23, 12, e13395, 10.1111/cmi.13395

Rallapalli S, Guhathakurta S, Bishi DK, Subbarayan R, Mathapati S, Korrapati PS.  A critical appraisal of humanized alternatives to fetal bovine serum for clinical applications of umbilical cord derived mesenchymal stromal cells.  Biotechnol Lett., 2.461, 43, 10, 2067-2083, 10.1007/s10529-021-03180-4

Sharma V, Dash SK, Govarthanan K, Gahtori R, Negi N, Barani M, Tomar R, Chakraborty S, Mathapati S, Bishi DK, Negi P, Dua K, Singh SK, Gundamaraju R, Dey A, Ruokolainen J, Thakur VK, Kesari KK, Jha NK, Gupta PK, Ojha S. Recent Advances in Cardiac Tissue Engineering for the Management of Myocardium Infarction.  Cells, 7.668, 10, 10, 2538, 10.3390/cells10102538

Aggarwal C, Saini K, Reddy ES, Singla M, Nayak K, Chawla YM, Maheshwari D, Singh P, Sharma P, Bhatnagar P, Kumar S, Gottimukkala K, Panda H, Gunisetty S, Davis CW, Kissick HT, Kabra SK, Lodha R, Medigeshi GR, Ahmed R, Murali-Krishna K, Chandele A., Immunophenotyping and Transcriptional Profiling of Human Plasmablasts in Dengue., J. Virol., 4.501, 95, 23, e0061021, 10.1128/JVI.00610-21.

Sharma KB, Chhabra S, Aggarwal S, Tripathi A, Banerjee A, Yadav AK, Vrati S, Kalia M., Proteomic landscape of Japanese encephalitis virus-infected fibroblasts., J Gen Virol. , 3.376, 102, 9, , 10.1099/jgv.0.001657

Kumar A, Sharma P, Sharma N, Kumar Y, Mahajan D. Catalyst free N-formylation of aromatic and aliphatic amines exploiting reductive formylation of CO2 using NaBH4, RSC Adv., , 11, 41, 25777-25787, 10.1039/d1ra04848a.

Verma R, Saha S, Kumar S, Mani S, Maiti TK, Surjit M., RNA-Protein Interaction Analysis of SARS-CoV-2 5' and 3' Untranslated Regions Reveals a Role of Lysosome-Associated Membrane Protein-2a during Viral Infection., mSystems, 6.53, 6, 4, e0064321, 10.1128/mSystems.00643-21.

Mittal L, Kumari A, Srivastava M, Singh M, Asthana S., Identification of potential molecules against COVID-19 main protease through structure-guided virtual screening approach. , J Biomol Struct Dyn., 5.23, 39, 10, 3662-3680, 10.1080/07391102.2020.1768151. 

Madhry D, Pandey KK, Kaur J, Rawat Y, Sapra L, Y S RK, Srivastava RK, Bhattacharyya S, Verma B., Role of non-coding RNAs in Dengue virus-host interaction. , Front Biosci (Schol Ed)., 2.436, 13, 1, 44-55, 10.52586/S552. 

Lavhale SG, Joshi RS, Kumar Y, Giri AP., Functional insights into two Ocimum kilimandscharicum 4-coumarate-CoA ligases involved in phenylpropanoid biosynthesis., Int J Biol Macromol., 8.025, 181, , 202-210, 10.1016/j.ijbiomac.2021.03.129.

Pandey M, Bansal S, Bar S, Yadav AK, Sokol NS, Tennessen JM, Kapahi P, Chawla G., miR-125-chinmo pathway regulates dietary restriction-dependent enhancement of lifespan in Drosophila., Elife, 8.713, 8, 10, e62621, 10.7554/eLife.62621.

Kaur L, Puri M, Pal Sachdeva M, Mishra J, Nava Saraswathy K., Maternal one carbon metabolism and interleukin-10 &-17 synergistically influence the mode of delivery in women with Early Onset Pre-Eclampsia., Pregnancy Hypertens., 2.494, 24, 79-89, 10.1016/j.preghy.2021.02.011.

Tyagi R, Srivastava M, Singh B, Sharma S, Pandey RP, Asthana S, Kumar D, Raj VS., Identification and validation of potent Mycobacterial proteasome inhibitor from Enamine library. , J Biomol Struct Dyn. , 5.23, 1-11, 10.1080/07391102.2021.1914173.

Arora G, Ghosh S, Chatterjee S., Understanding doxorubicin associated calcium remodeling during triple-negative breast cancer treatment: an in silico study, Explor Target Antitumor Ther., 2.4, 2, , 208,  https://doi.org/10.37349/etat.2021.00042.

Ganneru B, Jogdand H, Daram VK, Das D, Molugu NR, Prasad SD, Kannappa SV, Ella KM, Ravikrishnan R, Awasthi A, Jose J, Rao P, Kumar D, Ella R, Abraham P, Yadav PD, Sapkal GN, Shete-Aich A, Desphande G, Mohandas S, Basu A, Gupta N, Vadrevu KM., Th1 skewed immune response of whole virion inactivated SARS CoV 2 vaccine and its safety evaluation., iScience, 5.74, 24, 4, 102298, 10.1016/j.isci.2021.102298.

Dwivedy A, Ashraf A, Jha B, Kumar D, Agarwal N, Biswal BK. De novo histidine biosynthesis protects Mycobacterium tuberculosis from host IFN-γ mediated histidine starvation., Commun Biol., 6.268, 4, 1, 410, 10.1038/s42003-021-01926-4.

Devanga Ragupathi NK, Muthuirulandi Sethuvel DP, Murugan D, Ranjan R, Gautam V, Gupta P, Johnson J, Sharma NC, Mutreja A, Haldar P, Kumar A, Bhatnagar P, Sangal L, Veeraraghavan B.  Divergent evolution of Corynebacterium diphtheriae in India: An update from National Diphtheria Surveillance network.  PLoS One, 16, 12, e0261435

Saini V, Kalra P, Sharma M, Rai C, Saini V, Gautam K, Bhattacharya S, Mani S, Saini K, Kumar S., A Cold Chain-Independent Specimen Collection and Transport Medium Improves Diagnostic Sensitivity and Minimizes Biosafety Challenges of COVID-19 Molecular Diagnosis.  Microbiol Spectr.  9, 3, e0110821

Suri C, Awasthi A, Asthana S. Crystallographic landscape provides molecular insights into the modes of action of diverse ROR-γt modulators. Drug Discov Today. 27, 2, 652-663

Ramachandran Thiruvengadam, Amit Awasthi*,Guruprasad Medigeshi*, Sankar Bhattacharya, Shailendra Mani, Sridhar Sivasubbu, Tripti Shrivastava, Sweety Samal, Deepika Rathna Murugesan, Bapu Koundinya Desiraju, Pallavi Kshetrapal, Rajesh Pandey, Vinod Scaria, Praveen Kumar Malik, Juhi Taneja, Akshay Binayke, Tarini Vohra, Aymaan Zaheer, Deepak Rathore, Naseem Ahmad Khan, Heena Shaman, Shubbir Ahmed, Rajesh Kumar, Suprit Deshpande, Chandru Subramani, Nitya Wadhwa, Nimesh Gupta, Anil K Pandey, Jayanta Bhattacharya, Anurag Agrawal, Sudhanshu Vrati, Shinjini Bhatnagar, Pramod Kumar Garg,  Effectiveness of ChAdOx1 nCoV-19 vaccine against SARS-CoV-2 infection during the delta (B.1.617.2) variant surge in India: a test-negative, case-control study and a mechanistic study of post-vaccination immune responses, The Lancet Infectious Diseases

Sarkar S, Kumari D, Gupta SK, Sharma V, Mukhi S, Kamboj P, Sasibhushan V, Rai RK, Jatavallabhula SL, Mahajan D, Kumar Y, Kumar A, Dikshit M. , Saroglitazar and Hepano treatment offers protection against high fat high fructose diet induced obesity, insulin resistance and steatosis by modulating various class of hepatic and circulating lipids. Biomed Pharmacother. 144,  112357

Thiruvengadam R, Desiraju BK, Natchu UCM, Wadhwa N, Sachdeva K, Misra S, Parmar N, Juyal M, Mittal P, Bharti R, Tripathi R, Ramji S, Sachdev HS, Bhatnagar S; GARBH–Ini study team. Gestational weight gain trajectories in GARBH-Ini pregnancy cohort in North India and a comparative analysis with global references.  Eur J Clin Nutr.

Khurana H, Srivastava M, Chaudhary D, Gosain TP, Kumari R, Bean AC, Chugh S, Maiti TK, Stephens CE, Asthana S, Singh R., Identification of diphenyl furan derivative via high throughput and computational studies as ArgA inhibitor of Mycobacterium tuberculosis. Int J Biol Macromol. S0141-8130(21)02415-6

Kashyap B, Barge SR, Bharadwaj S, Deka B, Rahman S, Ghosh A, Manna P, Dutta PP, Sheikh Y, Kandimalla R, Samanta SK, Boruwa J, Saikia S, Swargiary D, Kamboj P, Tuli D, Pal U, Borah JC, Banerjee SK, Talukdar NC., Evaluation of therapeutic effect of Premna herbacea in diabetic rat and isoverbascoside against insulin resistance in L6 muscle cells through bioenergetics and stimulation of JNK and AKT/mTOR signaling cascade, Phytomedicine, 93,153761

Mittal L, Tonk RK, Awasthi A, Asthana S. Targeting cryptic-orthosteric site of PD-L1 for inhibitor identification using structure-guided approach , Arch Biochem Biophys. 713, 109059

Perween R, PraveenKumar M, Shrivastava T, Parray HA, Singh V, Singh S, Chiranjivi A, Jakhar K, Sonar S, Tiwari M, Reema, Panchal AK, Sharma C, Rathore DK, Ahamed S, Samal S, Mani S, Bhattacharyya S, Das S, Luthra K, Kumar R. The SARS CoV-2 spike directed non-neutralizing polyclonal antibodies cross-react with Human immunodeficiency virus (HIV-1) gp41. Int Immunopharmacol. 101, PtB, 108187

Mehrotra T, Devi TB, Kumar S, Talukdar D, Karmakar SP, Kothidar A, Verma J, Kumari S, Alexander SM, Retnakumar RJ, Devadas K, Ray A, Mutreja A, Nair GB, Chattopadhyay S, Das B., Antimicrobial resistance and virulence in Helicobacter pylori: Genomic insights. Genomics, 113, 6, 3951-3966

Dutta S, Das B, Ghosh TS, Kumar S, Kaushal RK, Ray P, Suri V, Nair GB. Human Milk Microbiome of Healthy Indian Mothers is Dominated by Genus Pseudomonas. J Hum Lact. 8903344211048410

Rizvi ZA, Dalal R, Sadhu S, Kumar Y, Kumar S, Gupta SK, Tripathy MR, Rathore DK, Awasthi A., High-salt diet mediates interplay between NK cells and gut microbiota to induce potent tumor immunity. Sci Adv. 7, 37, eabg5016

Kumar R, Ahmed S, Parray HA, Das S., Chikungunya and arthritis: An overview., Travel Med Infect Dis.

Kumari A, Mittal L, Srivastava M, Pathak DP, Asthana S., Conformational Characterization of the Co-Activator Binding Site Revealed the Mechanism to Achieve the Bioactive State of FXR., Front Mol Biosci., 8, 658312

Kao C, Surjit M, Ranjith-Kumar CT. Viral Hepatitis: Pathophysiology, Prevention, and Control., Front Cell Infect Microbiol.11, 633580

Srivastava M, Mittal L, Kumari A, Asthana S., Molecular Dynamics Simulations Reveal the Interaction Fingerprint of Remdesivir Triphosphate Pivotal in Allosteric Regulation of SARS-CoV-2 RdRp., Front Mol Biosci., 8, , 639614

Parray HA, Shukla S, Perween R, Khatri R, Shrivastava T, Singh V, Murugavelu P, Ahmed S, Samal S, Sharma C, Sinha S, Luthra K, Kumar R., Inhalation monoclonal antibody therapy: a new way to treat and manage respiratory infections, Appl Microbiol Biotechnol.1-18

Ramana LN, Agarwal V, Nanodiamonds synthesis using sustainable concentrated solar thermal energy: Applications in bioimaging and phototherapy, Nanotechnology.

Rizvi ZA, Dalal R, Sadhu S, Binayke A, Dandotiya J, Kumar Y, Shrivastava T, Gupta SK, Agarwal S, Tripathy MR, Rathore DK, Yadav AK, Medigeshi GR, Pandey AK, Samal S, Ashtana S, Awasthi A., Immunological and cardio-vascular pathologies associated with SARS-CoV2 infection in golden Syrian hamsters.,eLife,11, H2,e73522

Tripathi A, Rawat BS, Addya S, Surjit M, Tailor PB, Vrati S, Banerjee A., Lack of Interferon Regulatory Factor 8 Associated with Restricted IFN-gamma expression Augmented Japanese Encephalitis Virus Replication in the Mouse Brain., Journal of Virology.

Sharma R, Lunge A, Mangla N, Agarwal N, Proteomic Landscape of a Drug-Tolerant Persister Subpopulation of Mycobacterium tuberculosis., J Proteome Res.

Aggarwal S, Tolani P, Gupta S, Yadav AK., Posttranslational modifications in systems biology., Adv Protein Chem Struct Biol., 2021, 127, 93-126

Tolani P, Gupta S, Yadav K, Aggarwal S, Yadav AK. Big data, integrative omics and network biology. Adv Protein Chem Struct Biol., 2021, 17, 127-160

Anand A, Chatterjee B, Dhiman A, Goel R, Khan E, Malhotra A, Santra V, Salvi N, Khadilkar MV, Bhatnagar I, Kumar A, Asthana A, Sharma TK., Complex target SELEX-based identification of DNA aptamers against Bungarus caeruleus venom for the detection of envenomation using a paper-based device., Biosens Bioelectron, 193,113526

Kumar M, Kumar J, Sharma S, Hussain MA, Shelly A, Das B, Yadav AK, Mazumder S., TLR22-mediated activation of TNF-α-caspase-1/IL-1β inflammatory axis leads to apoptosis of Aeromonas hydrophila-infected macrophages., Mol Immunol.,137,114-123

Chauhan S, Rathore DK, Sachan S, Lacroix-Desmazes S, Gupta N, Awasthi A, Vrati S, Kalia M., Japanese Encephalitis Virus Infected Human Monocyte-Derived Dendritic Cells Activate a Transcriptional Network Leading to an Antiviral Inflammatory Response., Front Immunol.12, 638694

Harale B, Kidwai S, Ojha D, Singh M, Chouhan DK, Singh R, Khedkar V, Rode AB., Synthesis and evaluation of antimycobacterial activity of riboflavin derivatives., Bioorg Med Chem Lett., 48,128236

Gupta A, Anand A, Jain N, Goswami S, Ananthraj A, Patil S, Singh R, Kumar A, Shrivastava T, Bhatnagar S, Medigeshi GR, Sharma TK; DBT India Consortium for COVID-19 Research., A novel G-quadruplex aptamer-based spike trimeric antigen test for the detection of SARS-CoV-2., Mol Ther Nucleic Acids.

Panwar S, Kumari A, Kumar H, Tiwari AK, Tripathi P, Asthana S. , Structure-based virtual screening, molecular dynamics simulation and in vitro evaluation to identify inhibitors against NAMPT., J Biomol Struct Dyn.1-13

Sharma PP, Kumar S, Srivastava S, Srivastava M, Jee B, Gorobets NY, Kumar D, Kumar M, Asthana S, Zhang P, Poonam, Zoltner M, Rathi B. , Computational study of novel inhibitory molecule, 1-(4-((2S,3S)-3-amino-2-hydroxy-4-phenylbutyl)piperazin-1-yl)-3-phenylurea, with high potential to competitively block ATP binding to the RNA dependent RNA polymerase of SARS-CoV-2 virus., J Biomol Struct Dyn.1-19

Yadav N, Vishwakarma P, Khatri R, Siddqui G, Awasthi A, Ahmed S, Samal S., Comparative Immunogenicity Analysis of Intradermal versus Intramuscular Administration of SARS-CoV-2 RBD Epitope Peptide-based Immunogen In vivo., Microbes and Infection.

Roy S, Rizvi ZA, Clarke AJ, Macdonald F, Pandey A, Zaiss DMW, Simon AK, Awasthi A., EGFR-HIF1α signaling positively regulates the differentiation of IL-9 producing T helper cells., Nature Communications, 12, 1, 3182

Choudhuri S, Kaur T, Jain S, Sharma C, Asthana S., A review on genotoxicity in connection to infertility and cancer., Chemico-Biological Interactions, 345, , 109531

Kumari A, Mittal L, Srivastava M, Asthana S., Binding mode characterization of 13b in the monomeric and dimeric states of SARS-CoV-2 main protease using molecular dynamics simulations., Journal of Biomolecular Structure and Dynamics,1-19

Halder S, Ghosh S, Chattopadhyay J, Chatterjee S, Bistability in cell signalling and its significance in identifying potential drug targets. , Bioinformatics, btab395

Sarmah DT, Bairagi N, Chatterjee S., The interplay between DNA damage and autophagy in lung cancer: A mathematical study., Biosystems, 206, , 104443

Ramana LN, Mathapati SS, Salvi N, Khadilkar MV, Malhotra A, Santra V, Sharma TK., A paper microfluidic device based colorimetric sensor for the detection and discrimination of elapid versus viper envenomation.,Analyst,, H2,

Kamboj P, Sarkar S, Gupta SK, Bisht N, Kumari D, Alam MJ, Barge S, Kashyap B, Deka B, Bharadwaj S, Rahman S, Dutta PP, Borah JC, Talukdar NC, Banerjee SK, Kumar Y, Methanolic Extract of Lysimachia Candida Lindl. Prevents High-Fat High-Fructose-Induced Fatty Liver in Rats: Understanding the Molecular Mechanism Through Untargeted Metabolomics Study, Front Pharmacol, 12, , 653872

Vijayram R, Damaraju N, Xavier A, Desiraju BK, Thiruvengadam R, Misra S, Chopra S, Khurana A, Wadhwa N; GARBH-Ini Study Group, Rengaswamy R, Sinha H, Bhatnagar S, Comparison of first trimester dating methods for gestational age estimation and their implication on preterm birth classification in a North Indian cohort., BMC Pregnancy Childbirth, 21, 1, 343

Hussain MS, Vashist A, Kumar M, Taneja NK, Gautam US, Dwivedi S, Tyagi JS, Gupta RK., Anti-mycobacterial activity of heat and pH stable high molecular weight protein(s) secreted by a bacterial laboratory contaminant. ,Microb Cell Fact.,21, H2,15

Paul A, Kadnur HB, Ray A, Chatterjee S, Wig N. , Seroprevalence and attainment of herd immunity against SARS CoV-2: A modelling study.,J Family Med Prim Care,10, H2,4030-35

Mishra BB, Essafi M, Singh R, Gupta S, Parihar SP., Editorial: Repurposed Drugs as Immune-Modulators to Combat Infectious Diseases.,Front Immunol,13, H2,848373

Chopra A, Chavan-Gautam P, Tillu G, Saluja M, Borse S, Sarmukaddam S, Chaudhuri S, Rao B, Yadav B, Srikanth N, Patwardhan B., Randomized, Double Blind, Placebo Controlled, Clinical Trial to Study Ashwagandha Administration in Participants Vaccinated Against COVID-19 on Safety, Immunogenicity, and Protection With COVID-19 Vaccine-A Study Protocol.,Front Med (Lausanne),27, H2,652-663

Bugga P, Alam MJ, Kumar R, Pal S, Chattopadyay N, Banerjee SK. , Sirt3 ameliorates mitochondrial dysfunction and oxidative stress through regulating mitochondrial biogenesis and dynamics in cardiomyoblast.,Cell Signal, H2,110309

Yadav YK, Banerjee SK, Das B, Chaudhary K (2022) Editorial: System biology and Omics approaches for understanding complex disease biology. Front. Genet. doi: 10.3389/fgene.2022.896818 

Medigeshi GR, Batra G, Murugesan DR, Thiruvengadam R, Chattopadhyay S, Das B, Gosain M, Ayushi, Singh J, Anbalagan A, Shaman H, Pargai K, Mehdi F, Das SJ, Kahlon N, Singh S, Kshetrapal P, Wadhwa N, Pandey AK, Bhatnagar S, Garg PK. Sub-optimal neutralisation of omicron (B.1.1.529) variant by antibodies induced by vaccine alone or SARS-CoV-2 Infection plus vaccine (hybrid immunity) post 6-months. 10.1016/j.ebiom.2022.103938.

Systemic ablation of vitamin D receptor leads to skeletal muscle glycogen storage disorder in mice, Anamica Das1, Suchitra D. Gopinath2* & Gopalakrishnan Aneeshkumar Arimbasseri1*, Journal of Cachexia, Sarcopenia and Muscle (2021)
 

Praveenkumar Murugavelu, Reshma Perween, Tripti Shrivastava, Vanshika Singh, Hilal Ahmad Parray, Swarandeep Singh, Adarsh Kumar Chiranjivi, Ramachandran Thiruvengadam, Savita Singh, Naveen Yadav, Kamini Jakhar, Sudipta Sonar, Shailendra Mani, Sankar Bhattacharyya, Chandresh Sharma, Preeti Vishwakarma, Ritika Khatri, Anil Kumar Panchal, Supratik Das, Shubbir Ahmed, Sweety Samal, Pallavi Kshetrapal, Shinjini Bhatnagar, Kalpana Luthra, Rajesh Kumar Non-neutralizing SARS CoV-2 directed polyclonal antibodies demonstrate cross-reactivity with the HA glycans of influenza virus, International Immunopharmacology, Volume 99,2021,108020, https://doi.org/10.1016/j.intimp.2021.108020.

Paul, A., Azhar, S., Das, P, N., Bairagi, N., Chatterjee, S., Elucidating the metabolic characteristics of pancreatic β-cells from patients with type 2 diabetes (T2D) using a genome-scale metabolic modeling. Computers in Biology and Medicine. (vol. 144) 105365, (2022).  *corresponding author

Sutar J. Deshpande S. Mullick R. Hingankar N. Patel V. Bhattacharya J.  May 2021  Geospatial HIV-1 subtype C gp120 sequence diversity and its predicted impact on broadly neutralizing antibody sensitivity   PLOS ONE  10.1371/journal.pone.0251969 

Kumar R Deshpande S Sewall LM Ozorowski G Cottrell CA Lee WH Holden LG Richey ST Chandrawacar AS Dhiman K Ashish Kumar V Ahmed S Hingankar N Kumar N Murugavel KG Srikrishnan AK Sok D Ward AB Bhattacharya J.  APR 2021  Elicitation of potent serum neutralizing antibody responses in rabbits by immunization with an HIV-1 clade C trimeric Env derived from an Indian elite neutralizer.  PLoS Pathog  10.1371/journal.ppat.1008977

Mullick R. Sutar J. Hingankar N. et al.  May 2021  Neutralization diversity of HIV-1 Indian subtype C envelopes obtained from cross sectional and followed up individuals against broadly neutralizing monoclonal antibodies having distinct gp120 specificities.  Retrovirology 18  10.1186/s12977-021-00556-2

Khan NA Kar M Panwar A Wangchuk J Kumar S Das A Pandey AK Lodha R Medigeshi GR.  Apr 2021  Oxidative stress specifically inhibits replication of dengue virus.  J Gen Virol  10.1099/jgv.0.001596

Tripti Shrivastava Balwant Singh Zaigham Abbas Rizvi Rohit Verma Sandeep Goswami Preeti Vishwakarma Kamini Jakhar Sudipta Sonar Shailendra Mani Sankar Bhattacharya Amit Awasthi and Milan Surjit  April 2021  Comparative immunomodulatory evaluation of the receptor binding domain of SARS-CoV-2 spike protein; a potential vaccine candidate imparts potent humoral and Th1 type immune response in a mouse model  Frontiers in Immunology  10.3389/fimmu.2021.641447 

Shen, W.J., Asthana, S., Kraemer, F.B., Azhar, S, Scavenger receptor B type 1: expression, molecular regulation, and cholesterol transport function, journal of lipid research, 4.743, 7, 59, 1114-1131, 10.1194/jlr.R083121.

Mehta, O., Ghosh, T.S., Kothidar, A., Gowtham, M.R., Mitra, R., Kshetrapal, P., Wadhwa, N., Ramachandran, T., GARBH-Ini study group, Nair, G.B., Bhatnagar, S., and Das, B. , The vaginal microbiome of pregnant Indian women: Insights into the genome of dominants Lactobacillus species., Microbial Ecology, 3.356, 80, 2, 487-499, 10.1007/s00248-020-01501-0.

Sharma N, Aggarwal S, Kumar S, Sharma R, Choudhury K, Singh N, Jayaswal P, Goel R, Wajid S, Yadav AK, Atmakuri K (2019). Comparative analysis of homologous aminopeptidase PepN from pathogenic and nonpathogenic mycobacteria reveals divergent traits. PLoS ONE 14(4): e0215123. https://doi.org/ 10.1371/journal.pone.0215123

Mohammed, S.A., Parmesha, B., Kumar, Y., Tariq, U., Sudheer, A.K., and Banerjee, S.K, Allylmethylsulfide, a sulfur compound derived from garlic, attenuates isoproterenolinduced cardiac hypertrophy in rats. Oxidative Medicine and Cellular Longevity ,2020

Shukla, R., Shanmugam, R.K., Ramasamy, V., Arora, U., Batra, G., Acklin, J.A., Krammer, F., Lim, J.K., Swaminathan, S., and Khanna, N. Zika virus envelope nanoparticle antibodies protect mice without risk of disease enhancement. EBioMedicine,54

WHO Immediate KMC Study Group, Impact of continuous Kangaroo Mother Care initiated immediately after birth (iKMC) on survival of newborns with birth weight between 1.0 to < 1.8 kg: study protocol for a randomized controlled trial. Trials,21

Mukkamala, R., Kumar, R., Banerjee, S.K., and Aidhen, I.S. Synthesis of Benzyl C analogues of dapagliflozin as potential SGLT2 inhibitors. European Journal of Organic Chemistry, 2020

Kaur, P., Agarwala, A., Makharia, G., Bhatnagar, S., and Tandon, N. Effect of gluten free diet on metabolic control and anthropometric parameters in type 1 diabetes with subclinical celiac disease: a randomized controlled trial. Endocrine Practice,26

Arvind, B., Medigeshi, G.R., Kapil, A., Xess, I., Singh, U., Lodha, R., and Kabra, S.K. Aetiological agents for pulmonary exacerbations in children with cystic fibrosis: An observational study from a tertiary care centre in northern India, Indian Journal of Medical Research,151

Goswami, R., and Awasthi, A. T Cell Differentiation and Function in Tissue Inflammation, Frontiers in Immunology,11

Kumar, P., Mukherjee, A., Randev, S., Medigeshi, G.R., Jat, K.R., Kapil, A., Lodha, R., Kabra, S.K. Effect of acute respiratory infections in infancy on pulmonary function test at 3 years of age: a prospective birth cohort study. BMJ Open Respiratory Research,7

Gupta, B., Sadaria,D., Warrier, V.U., Makandar, A.I., Kant, R., Sethi, G., Pal, J.K., Awasthi, A., Yuba, E., Garg, M., and Gupta, R.K. Plant lectins to prepare the targeted nanovaccines for cancer immunotherapy. Seminars in Cancer Biology,S1044-579

Chandel, V., Srivastava, M., Srivastava, A., Asthana, S., Kumar, D. In-silico interactions of active Phytochemicals with c-MYC EGFR and ERBB2 oncoproteins,Chemical Biology Letters,7

Kuila, B., Sharma, P., Mahajan, D., Singh, P., and Bhargava, G. Rhodium-catalysed chemoand regio-selective [3+ 2+ 2] cycloadditions of bis (methylenecyclopropanes) and alkynes: Synthesis of spirocyclic 5–7 condensed cycloheptenes. Synthetic Communications,50

Gupta, J., Kaul, S., Srivastava, A., Kaushik, N., Ghosh, S., Sharma, C., Batra, G., Banerjee, M., Shalimar, Nayak, B., Ranjith-Kumar, C.T., and Surjit, M. Expression, purification and characterization of the hepatitis E Virus Like-Particles in the Pichia pastoris. Frontiers in Microbiology,11

Singh, M., Srivastava, M., Purushotham, N., Paramesha, B., Wakode, S.R., Poojarey, B., Banerjee, S., and Asthana, S. Molecular dynamics simulation reveals new pocket for the design of novel amino acid coupled Sirt1 selective inhibitor. Biophysical Journal,118

Das, R., Chatterjee, B., Kapil, A., and Sharma, T.K  Aptamer-NanoZyme mediated sensing platform for the rapid detection of Escherichia coli in fruit juice, Sensing and Bio-Sensing Research,27

Menon, R., Debnath, C., Lai, A., Guanzon, D., Bhatnagar, S., Kshetrapal, P., Sheller-Miller, S., and Salomon, C. Protein profile changes in circulating placental extracellular vesicles in term and preterm births: A longitudinal study. Endocrinology,161

Arora, G., Gagandeep, Behura, A., Gosain, T.P., Shaliwal, R.P., Kidwai, S., Singh, P., Kandi, S.K., Dhiman, R., Rawat, D.S., and Singh, R. NSC 18725, a pyrazole derivative inhibits growth of intracellular Mycobacterium tuberculosis by induction of autophagy, Frontiers in Microbiology,10

Kumari, S., Katare, P.B., Elancheran, R., Nizami, H.L., Paramesha, B., Arava, S., Sarma, P.P., Kumar, R., Mahajan, D., Kumar, Y., Devi, R., and Banerjee, S.K. Musa balbisiana fruit rich in polyphenols attenuates isoproterenolinduced cardiac hypertrophy in rats via inhibition of inflammation and oxidative stress. Oxidative Medicine and Cellular Longevity,2020

Trivedi, J., Mahajan, D., Jaffe, R.J., Acharya, A., Mitra, D., and Byrareddy, S.N. Recent Advances in the Development of Integrase Inhibitors for HIV Treatment. Current HIV/AIDS Reports,17

Pierson, E., Haufroid, M., Gosian, T.P., Chopra, P., Singh, R., and Wouter, J. Identification and repurposing of trisubstituted harmine derivatives as novel inhibitors of Mycobacterium tuberculosis phosphoserine phosphatase. Molecules,25

Reid, R., Chatterjee, B., Das, S.J., Ghosh, S., and Sharma, T.K. Application of aptamers as molecular recognition elements in lateral flow assays. Analytical Biochemistry ,593

 Sadaf, S., Awasthi, D., Singh, A., Nagarkoti, S., Kumar, S., Barthwal, M.K., and Dikshit, M. Pyroptotic and apoptotic cell death in iNOS and nNOS overexpressing K562 cells: a mechanistic insight, Biochemical Pharmacology,176

Pareek, S., Kurakawa, T., Das, B., Motooka, D., Nakaya, S., Rongsen-Chandola, T., Goyal, N., Kayama, H., Dodd, D., Okumura, R., Maeda, Y., Fujimoto, K., Nii, T., Ogawa, T., Iida, T., Bhandari, B., Kida, T., Nakamura, S., Nair, G.B., and Takeda, K. A comparative analysis of intestinal microbiota diversity between Japanese and Indian population shows diet dependent interaction of bacteria and fungi. NPJ Biofilms and Microbiomes,5

Bouzeyen, R., Haoues, M., Barbouche, M.R., Singh, R., Essafi, M. FOXO3 transcription factor regulates il-10 expression in mycobacteria-infected macrophages, tuning their polarization and the subsequent adaptive immune response, Frontiers in Immunology,10

Sohail, A., Abbas, Z.A., Ahuja, V., Awasthi, A., and Srikanth, C.V. DeSUMOylase SENP7 mediated epithelial signalling triggers intestinal inflammation via expansion of Gamma-delta T cell. Cell Reports,29

Sharma, N.C., Efstratiou, A., Guaraldi, A.L.M., Mokrousov, I., Mutreja, A., Das, B., and Ramamurthy, T. Diphtheria. Nature Reviews Disease Primers,5

Sharma, A., Osato, N., Liu, H., Asthana, S., Dakal, T.C., Ambrosini, G., Bucher, P., Schmitt, I., and Wüllner, U. Common genetic variants associated with Parkinson's disease display widespread signature of epigenetic plasticity. Scientific Reports,9

Kamboj, P., Talukdar, N.C., and Banerjee, S.K. Therapeutic benefit of Dillenia indica in diabetes and its associated complications. Journal of Diabetes Research,2019

Dugar, S., Villarreal, F., Hollinger, F.H., Mahajan, D., and Ramirez-Sanchez, I. 11-β-hydroxysterols as possible endogenous stimulators of mitochondrial biogenesis as inferred from epicatechin molecular mimicry, Pharmacological Research,151

Sharma, K.B., Sharma, M., Aggarwal, S., Yadav, A.K., Bhatnagar, S., Vrati, S., and Kalia, M. Quantitative proteome analysis of Atg5-deficient mouse embryonic fibroblasts reveals the range of the autophagy-modulated basal cellular proteome.,mSystems,4

Awasthi, A., and Kumar, H. T cell subtypes and its therapeutic potential in autoimmune diseases and cancer, International Reviews of Immunology,385

Subramanian, L., Maghajothi, S., Singh, M., Kesh, K., Kalyani, A., Sharma, S., Khullar, M., Victor, S.M., Swarnakar, S., Asthana, S., Mullasari, A.S., and Mahapatra, N.R. A Common Tag Nucleotide Variant in MMP7 Promoter Increases Risk for Hypertension via Enhanced Interactions with CREB (Cyclic AMP Response Element-Binding Protein) Transcription Factor. Hypertension,74

Banerjee, S.K., Lata, S., Sharma, A.K., Bagchi, S., Kumar, M., Sahu, S.K., Sarkar, D., Gupta, P., Jana, K., Gupta, U.D., Singh, R., Saha, S., Basu, J., and Kundu, M. The sensor kinase MtrB of Mycobacterium tuberculosis regulates hypoxic survival and establishment of infection,Journal of Biological Chemistry,294

Nagarkoti, S., Dubey, M., Sadaf, S., Awasthi, D., Chandra, T., Jagavelu, K., Kumar, S.,and Dikshit, M. Catalase S-glutathionylation by NOX2 and mitochondrial-derived ROS adversely affects mice and human neutrophil survival. Inflammation,42

Kumar, Y., Kuche, K., Swami, R., Katiyar, S.S., Chaudhari, D., Katare, P.B., Banerjee, S.K., and Jain, S.  Exploring the potential of novel pH sensitive lipoplexes for tumor targeted gene delivery with reduced toxicity,International Journal of Pharmaceutics,5

Pal, S., Medatwal, N., Kumar, S., Kar, A.,Komalla, V.,Yavvari, P.S., Mishra, D., Rizvi, Z.A.,Nandan, S., Malakar, D.,Pillai, M.,Awasthi, A.,Das, P.,Sharma, R.D., Srivastava, A., Sengupta, S.,Dasgupta, U., and Bajaj, A. A localized chimeric hydrogel therapy combats tumor progression through alteration of sphingolipid metabolism. ACS Central Science,5

Dhiman, A., Kumar, C., Mishra, S.K., Sikri, K., Haldar, S., Sharma, N., Bansal, A., Ahmad, Y., Kumar, A., Sharma, T.K, and Tyagi, J.S.Theranostic application of a novel G-Quadruplex forming DNA aptamer targeting glyoxylate cycle enzyme malate synthase of Mycobacterium tuberculosis. Molecular Therapy Nucleic Acids, (Cell Press),18

 Saxena, S., Chakraborty, A., Kaushal, M., Mohil, R.S., Mishra, A.K., Singh, L.C., Sharma,J., Bansal, A., Agrawal, U., Mehta, J., Asthana, S., Kataki, A.C., Kapur, S., and Bhatnagar, D. Breast Cancer in Indian Women: Genetic Risk Factors and Predictive Biomarkers,Annals of the National Academy of Medical Sciences,55

Kar, M., Khan, N.A., Panwar, A., Bais, S.S., Basak, S., Goel, R., Sopory, S., and Medigeshi, G.R. Zinc chelation specifically inhibits early stages of dengue virus replication by activation of NF-κβ and induction of antiviral response in epithelial cells. Frontiers in Immunology,10

Chatterjee, B., Das S.J., Anand, A., and Sharma, T.K. Nanozymes and aptamer-based biosensing,Materials Science for Energy Technologies,3

Sutar, J., Padwal., V., Sonawani, A., Nagar, V., Patil, P., Kulkarni, B., Hingankar, N., Deshpande, S., Idicula-Thomas, S., Jagtap, J., Bhattacharya, J., Bandivdekar, A., and Patel, V. Effect of diversity in gp41 membrane proximal external region of primary HIV-1 Indian subtype C sequences on interaction with broadly neutralizing antibodies 4E10 and 10E8. Virus Research,273

Senapati, T., Kothidar, A., Banerjee, S., and Das, B. Insights into the gastrointestinal tract microbiomes of Indian population. Journal of Biosciences,44

Kumar, S., and Dikshit, M. Metabolic insight of neutrophils in health and disease. Frontiers in Immunology,10

Das, B., and Nair, G.B. Homeostasis and dysbiosis of the gut microbiome in health and disease,Journal of Biosciences,44

Maurya, S.S., Gosain, T.P., Kidwai, S., Singh, R., and Rawat, D.S. Synthesis of 1,3,4-oxadiazole and imidazo [1,2-1] pyridine based molecular hybrids and their in vitro antituberculosis and cytotoxicity studies. Indian Journal of Chemistry,58B

Kidwai, S., Bouzeyen, R., Chakraborti, S., Khare, N., Das, S., Priya Gosain, T., Behura, A., Meena, C.L., Dhiman, R., Essafi, M., Bajaj, A., Saini, D.K., Srinivasan, N., Mahajan, D., and Singh, R. NU-6027 inhibits growth of Mycobacterium tuberculosis by targeting protein kinase D and protein kinase G.  Antimicrobial Agents and Chemotherapy,63

Roy, S., Roy, S., Kar, M., Chakraborty, A., Kumar, A., Delogu, F., Asthana, S., Hande, M.P., and Banerjee, B. Combined treatment with cisplatin and the tankyrase inhibitor XAV-939 increases cytotoxicity, abrogates cancer-stem-like cell phenotype and increases chemosensitivity of head-and-neck squamouscell carcinoma cells. Mutation Research, 846.

Roy, S., and Awasthi, A. Emerging roles of non-coding RNAs in T cell differentiation and functions in autoimmune diseases. International Reviews of Immunology,38

Chandwaskar, R., and Awasthi, A.  Emerging roles of Th9 cells as an anti-tumor helper T cells, International Reviews of Immunology,38

Awasthi, D., Nagarkoti, S., Sadaf, S., Chandra, T., Kumar, S., and Dikshit, M. Glycolysis dependent lactate formation in neutrophils: A metabolic link between NOX-dependent and independent NETosis. Biochimica et Biophysica Acta - Molecular Basis of Disease,1865

Kaur, H., Chatterjee, B., Bruno, J.G., and Sharma, T.K. Defining Target Product Profiles (TPPs) for aptamer-based diagnostics. Advances in Biochemical Engineering/Biotechnology,174

Dharra, R., Radhakrishnan, V.S., Prasad, T., Thakur, Z., Cirillo, J., Pandey, A.K., Kulharia, M., and Mehta, P.  Evaluation of in silico designed inhibitors targeting MelF (Rv1936) against Mycobacterium marinum within macrophages. Scientific Reports,9

Behura, A., Mishra, A., Chugh, S., Mawatwal, S., Kumar, A., Manna, D., Mishra, A., Singh, R., and Dhiman, R.  ESAT-6 modulates Calcimycin-induced autophagy through microRNA-30a in mycobacteria infected macrophages. Journal of Infection,79

Nizami, H.L., Katare, P., Prabhakar, P., Kumar, Y., Arava, S.K., Chakraborty, P., Maulik, S.K., and Banerjee, S.K, Vitamin D deficiency in rats causes cardiac dysfunction by inducing myocardial insulin resistance. Molecular Nutrition & Food Research,63

 Shacklett, B.L., Blanco, J., Hightow-Weidman, L., Mgodi, N., Alcamí, J., Buchbinder, S., Chirenje, M., Dabee, S., Diallo, M., Dumchev, K., Herrera, C., Levy, M.E., Martin Gayo, E., Makoah, N.A., Mitchell, K.M., Mugwanya, K., Reddy, K., Rodríguez, M.L., Rodriguez-Garcia, M.Shover, C.L., Shrivastava, T., Tomaras, G., Van Diepen, M., Walia, M., Warren, M., Manrique, A., Thyagarajan, B., and Torri, T. HIV Research for Prevention 2018: From research to impact conference summary and highlights, AIDS Research and Human Retroviruses ,35

Tiwari, P., Gosain, T.P., Singh, M., Sankhe, G.D., Arora, G., Kidwai, S., Agarwal, S., Chugh, S., Saini, D.K., and Singh, R. Inorganic polyphosphate accumulation suppresses the dormancy response and virulence in Mycobacterium tuberculosis. Journal of Biological Chemistry,294

Roy, S., and Awasthi, A. ATP triggers human Th9 cell differentiation via Nitric Oxide-mediated mTOR-HIF1α pathway. Frontiers in Immunology,10

Pathak, P., Kanshana, J.S., Kanuri, B., Rebello, S., Aggarwal, H., and Dikshit, M. Vasoreactivity of isolated aortic rings from dyslipidemic and insulin resistant inducible nitric oxide synthase knockout mice. European Journal of Pharmacology,855

Mishra, S.K., Jain, N., Shankar, U., Tawani, A., Sikri, K., Tyagi, J.S., Sharma, T. K, Margny, J.L., and Kumar, A.Characterization of G-quadruplex motifs in espB, espK and cyp51 genes of Mycobacterium tuberculosis as a potential drug target. Molecular Therapy - Nucleic Acids,16

Birla, S., Vijayakumar, P., Sehgal, S., Bhatnagar, S., Pallavi, K., and Sharma, ACharacterization of a novel POU1F1 mutation identified on screening 160 growth hormone deficiency patients, Hormone and Metabolic Research, 51

Tandon, H., Sharma, A., Wadhwa, S.Varadarajan, R., Singh, R., Srinivasan, N.,and Sandhya, S. Bioinformatic and mutational studies of related toxin-antitoxin pairs in M. tuberculosis predict and identify key functional residues.Journal of Biological Chemistry, 294

Chaterjee P. Nagi N. Agarwal A. Das B. Banerjee S. Sarkar S. Gupta N. Gangakhedkar R. Bhargava B.  September 2019  The 2019 novel coronavirus disease COVID-19 pandemic A review of the current evidence.  Ind. J. Med. Res  DOI10.4103/ijmr.IJMR51920 

Amit Kumar Singh Anubhav Tamrakar Ankit Jaiswal Naoki Kanayama Anshu Agarwal Prabhanshu Tripathi Prashant Kodgire   2019  Splicing regulator SRSF1-3 that controls somatic hypermutation of IgV genes interacts with topoisomerase 1 and AID  Molecular Immunology  10.1016/j.molimm.2019.10.002 

Kumar A Kumar N Sharma R Bhargava G Mahajan D  September 2019  Direct Conversion of Carboxylic Acids to Various Nitrogen-Containing Compounds in the One-Pot Exploiting Curtius Rearrangement.  J Org Chem  10.1021/acs.joc.9b01697 

Ramamurthy T Das B Chakraborty S Mukhopadhyay AK Sack DA.  2019 Aug  Diagnostic techniques for rapid detection of Vibrio cholerae  Vaccine  10.1016/j.vaccine.2019.07.099 

Bhabatosh Das  September 2019  Insights into TLC lysogeny A twist in themechanism of IMEX integration  NCBI  10.1073/pnas.1912633116 

Mittal L Srivastava M Asthana S  2019 Jul  Conformational Characterization of Linker Revealed the Mechanism of Cavity Formation by 227G in BVDV RDRP  J Phys Chem B.  10.1021/acs.jpcb.9b01859 

Ramamurthy T Mutreja A Weill F-X Das B Ghosh A Nair GB.  2019 Jul  Revisiting the global epidemiology of cholera in conjuction with the genomics of Vibrio cholera  Front. Public Health  10.3389/fpubh.2019.00203 

Das B Verma J Kumar P Ghosh A Ramamurthy T.  July 2019  Antibiotic resistance in Vibrio cholerae Understanding the ecology of resistance genes and mechanisms  Vaccine  10.1016/j.vaccine.2019.06.031 

Rajesh Kumar Hilal Ahmed Parray Tripti Shrivastava Subrata Sinha Kalpana Luthra  NA  Phage display antibody libraries A robust approach for generation of recombinant human monoclonal antibodies  International Journal of Biological Macromolecules  10.1016/j.ijbiomac.2019.06.006 

Author Suruchi Aggarwal Narayan C. Talukdar Amit K. Yadav  NA  Advances in Higher Order Multiplexing Techniques in Proteomics  J. Proteome Research  10.1021/acs.jproteome.9b00228

Pergu R. Dagar S. Kumar H. Kumar R. Bhattacharya J. and Mylavarapu SVS   May 2019  The chaperone ERp29 is required for tunneling nanotube formation by stabilizing M. Sec.  J Biol Chem  10.1074/jbc.RA118.005659 

Pant A. Das B. Bhadra R.K.   January 2019  CTX phage of Vibrio cholerae Genomics and applications.  Vaccine  10.1016/j.vaccine.2019.06.034 

Das B. and Chattoraj D.K.  January 2019  Functionality of Two Origins of Replication in Vibrio cholerae Strains with a Single Chromosome.  Front. Microbiol  10.3389/fmicb.2019.01314 

Bhatnagar S; Majumder P P; Salunke D M; Interdisciplinary Group for Advanced Research on Birth OutcomesDBT India Initiative GARBH-Ini  April 2019  A Pregnancy Cohort to Study Multidimensional Correlates of Preterm Birth in India Study Design Implementation and Baseline Characteristics of the Participants  American Journal of Epidemiology  10.1093/aje/kwy284 

Samal S; Bansal M; Das S  April 2019  Method to identify efficiently cleaved membrane-bound functional HIV-1 Human Immunodeficiency Virus-1 envelopes  MethodsX  10.1016/j.mex.2019.04.013 

Gupta A; Das P N; Bouzeyen R; Karmakar S P; Singh R; Chatterjee S  April 2019  Restoration of cytosolic calcium inhibits Mycobacterium tuberculosis intracellular growth Theoretical evidence and experimental observation  Journal of Theoretical Biology  10.1016/j.jtbi.2019.04.017 

Ankur Gupta, Ajay Kumar, Rajat Anand, Nandadulal Bairagi, Samrat Chatterjee, Genome scale metabolic model driven strategy to delineate host response to Mycobacterium tuberculosis infection, Molecular Omics, 2.273, ,10.1039/d0mo00138d.

John Protzko, Isaac Z Tanner, Morgan Daly Dedyo, JiaJia Fu, Bhavya Perma, Daniel Ari Friedman, Ada Gabriela Blidner, Juliet Tegan Johnston, Anant Kumar Srivastava, Roland Ruscher, Andreas Kupz, Michael A Tarselli, Felicia Beardsley, Mark Martin Jensen, Nikos Konstantinides, Divyansh Agarwal, Julia Yuen, Suchitra D Gopinath, Michael Tran Duong, Michael Strong, Matúš Soták, Katie Burnette, Samuel Nathan Kirshner, Athanasia Nikolaou, Basant A Ali, Benedito Alves de Oliveira Júnior, Elvira Sojli, Defining events: 2020 in hindsight, Science, 41.845, 371, 6524, 22-24, 10.1126/science.abg0904.

Ranjeet SinghMahl, Akhilesh Kumar, Helena J Tutill, Sreevidhya Tarakkad Krishnaji, Bharathwaj Sathyamoorthy, Mahdad Noursadeghi, Judith Breuer, Amit Kumar Pandey, Himanshu Kumar, NIX-mediated mitophagy regulate metabolic reprogramming in phagocytic cells during mycobacterial infection, Tuberculosis, 2.576, 126, , 102046, https://doi.org/10.1016/j.tube.2020.102046.

Sidhartha Giri, C P Girish Kumar, Shainey Alokit Khakha, Mamta Chawla-Sarkar, Varanasi Gopalkrishna, Shobha D Chitambar, Pratima Ray, S Venkatasubramanian, Biswa Jyoti Borkakoty, Subarna Roy, Jyothi Bhat, Bhagirathi Dwibedi, Pradeep Das, Vijayachari Paluru, Sasirekha Ramani, Sudhir Babji, Rashmi Arora, Sanjay M Mehendale, Mohan D Gupte, Gagandeep Kang, Diversity of rotavirus genotypes circulating in children < 5 years of age hospitalized for acute gastroenteritis in India from 2005 to 2016: analysis of temporal and regional genotype variation, BMC Infectious Diseases, 2.96, 20, 1, 740, 10.1186/s12879-020-05448-y.

Zhang H, Madi A, Yosef N, Chihara N, Awasthi A, Pot C, Lambden C, Srivastava A, Burkett PR, Nyman J, Christian E, Etminan Y, Lee A, Stroh H, Xia J, Karwacz K, Thakore PI, Acharya N, Schnell A, Wang C, Apetoh L, Rozenblatt-Rosen O, Anderson AC, Regev A, Kuchroo VK. An IL-27-driven transcriptional network identifies regulators of IL-10 expression across T helper cell subsets. Cell Rep. 2020 Nov 24;33(8):108433. doi: 10.1016/j.celrep.2020.108433. 

Vishwakarma P, Yadav N, Rizvi ZA, Khan NA, Chiranjivi AK, Mani S, Bansal M, Dwivedi P, Shrivastava T, Kumar R, Awasthi A, Ahmed S, Samal S. Severe acute respiratory syndrome Coronavirus 2 spike protein based novel epitopes induce potent immune responses in vivo and Inhibit Viral Replication in vitro. Front Immunol. 2021 Mar 26;12:613045. doi: 10.3389/fimmu.2021.613045.

Vishwakarma P, Khatri R, Siddiqui G, Yadav N, Rizvi ZA, Awasthi A, Samal S. Preclinical animal models for COVID-19 research-Making a wise choice. ARC Journal of Immunology and Vaccines. 2020; 5(1): 24-37.

Verma R, Saha S, Kumar S, Mani S, Maiti TK, Surjit M. RNA-protein interaction analysis of SARS-CoV-2 5’- and 3’-untranslated regions identifies an antiviral role of lysosome-associated membrane protein-2. bioRxiv (2021): 2021-01.

Tyagi R, Srivastava M, Jain P, Pandey RP, Asthana S, Kumar D, Raj VS. Development of potential proteasome inhibitors against Mycobacterium tuberculosis. J Biomol Struct Dyn. 2020 Oct 19:1-15. doi: 10.1080/07391102.2020.1835722. 

Tyagi R, Srivastava M, Singh B, Sharma S, Pandey RP, Asthana S, Kumar D, Raj VS. Identification and validation of potent Mycobacterial proteasome inhibitor from Enamine library. J Biomol Struct Dyn. 2021 May 6:1-11. doi: 10.1080/07391102.2021.1914173.

Trivedi J, Mahajan D, Jaffe RJ, Acharya A, Mitra D, Byrareddy SN. Recent advances in the development of integrase inhibitors for HIV treatment. Curr HIV/AIDS Rep. 2020 Feb;17(1):63-75. doi: 10.1007/s11904-019-00480-3.

Thakur SK, Goswami K, Rao P, Kaushik S, Singh BP, Kain P, Asthana S, Bhattacharjee S, Guchhait P, Eswaran SV. Fluoresceinated Aminohexanol tethered Inositol Hexakisphosphate: Studies on Arabidopsis thaliana and Drosophila melanogaster and docking with 2P1M receptor. ACS Omega. 2020 Apr 13;5(16):9585-9597. doi: 10.1021/acsomega.0c00961.

Taneja V, Goel M, Shankar U, Kumar A, Khilnani GC, Prasad HK, Prasad GBKS, Gupta UD, Sharma TK. An aptamer linked immobilized sorbent assay (ALISA) to detect circulatory IFN-α, an inflammatory protein among tuberculosis patients. ACS Comb Sci. 2020 Nov 9;22(11):656-666. doi: 10.1021/acscombsci.0c00108.

Tandon R, Soni A, Singh RK, Sodhi R, Seth MK, Sinha S, Sahdev S, Dhage G, Das B, Dastidar SG, Shriumalla RK, Yonesu K, Marumoto S, Nagayama T. Identification of novel Urotensin-II receptor antagonists with potent inhibition of U-II induced pressor response in mice. Eur J Pharmacol. 2020 Nov 5;886:173391. doi: 10.1016/j.ejphar.2020.173391. 

Singhal C, Bruno JG, Kaushal A, Sharma, TK.  Recent advances and a roadmap to aptamer-based sensors for bloodstream infections. ACS Appl. Bio Mater. 2021, 4, 5, 3962–3984. doi: https://dx.doi.org/10.1021/acsabm.0c01358.

Singh P, Khurana H, Yadav SP, Dhiman K, Singh P, Ashish, Singh R, Sharma D. Biochemical characterization of ClpB protein from Mycobacterium tuberculosis and identification of its small-molecule inhibitors. Int J Biol Macromol. 2020 Dec 15;165(Pt A):375-387. doi: 10.1016/j.ijbiomac.2020.09.131.

Singh M, Srivastava M, Wakode SR, Asthana S. Elucidation of structural determinants delineates the residues playing key roles in differential dynamics and selective inhibition of Sirt1-3. J Chem Inf Model. 2021 Mar 22;61(3):1105-1124. doi: 10.1021/acs.jcim.0c01193.

Singh M, Schiavone N, Papucci L, Maan P, Kaur J, Singh G, Nandi U, Nosi D, Tani A, Khuller GK, Priya M, Singh R, Kaur IP. Streptomycin sulphate loaded solid lipid nanoparticles show enhanced uptake in macrophage, lower MIC in Mycobacterium and improved oral bioavailability. Eur J Pharm Biopharm. 2021 Mar;160:100-124. doi: 10.1016/j.ejpb.2021.01.009. 

Shukla R, Beesetti H, Brown JA, Ahuja R, Ramasamy V, Shanmugam RK, Poddar A, Batra G, Krammer F, Lim JK, Kale S, Lal AA, Swaminathan S, Khanna N. Dengue and Zika virus infections are enhanced by live attenuated dengue vaccine but not by recombinant DSV4 vaccine candidate in mouse models. EBioMedicine. 2020 Oct;60:102991. doi: 10.1016/j.ebiom.2020.102991. 

Sehrawat S, Khasa R, Deb A, Prajapat SK, Mallick S, Basu A, Surjit M, Kalia M, Vrati S. Valosin-containing protein/p97 plays critical roles in the Japanese encephalitis virus life cycle. J Virol. 2021 Mar 17;95(11):e02336-20. doi: 10.1128/JVI.02336-20. 

Sharma A, Sanduja P, Anand A, Mahajan P, Guzman CA, Yadav P, Awasthi A, Hanski E, Dua M, Johri AK. Advanced strategies for development of vaccines against human bacterial pathogens. World J Microbiol Biotechnol. 2021 Mar 22;37(4):67. doi: 10.1007/s11274-021-03021-6.

Sharma A, Chattopadhyay G, Chopra P, Bhasin M, Thakur C, Agarwal S, Ahmed S, Chandra N, Varadarajan R, Singh R. VapC21 toxin contributes to drug-tolerance and interacts with non-cognate VapB32 antitoxin in Mycobacterium tuberculosis. Front Microbiol. 2020 Sep 11;11:2037. doi: 10.3389/fmicb.2020.02037.

Shankar U, Jain N, Mishra SK, Sharma TK, Kumar A. Conserved G-quadruplex motifs in gene promoter region reveals a novel therapeutic approach to target multi-drug resistance Klebsiella pneumoniae. Front Microbiol. 2020 Jun 26;11:1269. doi: 10.3389/fmicb.2020.01269.

Sarkar R, Sharma KB, Kumari A, Asthana S, Kalia M. Japanese encephalitis virus capsid protein interacts with non-lipidated MAP1LC3 on replication membranes and lipid droplets. J Gen Virol. 2021 Jan;102(1). doi: 10.1099/jgv.0.001508. 

Sankhyan A, Sharma T, Kaur T, Khan Z, Bhatnagar S, Tiwari A, Sharma C. Heterologous expression of Salmonella typhi - Cytolethal distending toxin subunit B in E. coli and comparative viable bioactivity characterization. J Appl. Biochem. Lab. Med. 2020; 01:28-33

Salminen T, Mehdi F, Rohila D, Kumar M, Talha SM, Prakash JAJ, Khanna N, Pettersson K, Batra G. Ultrasensitive and robust Point-of-Care immunoassay for the detection of Plasmodium falciparum malaria. Anal Chem. 2020 Dec 15;92(24):15766-15772. doi: 10.1021/acs.analchem.0c02748.

Sadhu S, Rizvi ZA, Pandey RP, Dalal R, Rathore DK, Kumar B, Pandey M, Kumar Y, Goel R, Maiti TK, Johri AK, Tiwari A, Pandey AK, Awasthi A. Gefitinib results in robust host-directed immunity against Salmonella infection through proteo-metabolomic reprogramming. Front Immunol. 2021 Mar 31;12:648710. doi: 10.3389/fimmu.2021.648710.

Sadaf S, Nagarkoti S, Awasthi D, Singh AK, Srivastava RN, Kumar S, Barthwal MK, Dikshit M. nNOS induction and NOSIP interaction impact granulopoiesis and neutrophil differentiation by modulating nitric oxide generation. Biochim Biophys Acta Mol Cell Res. 2021 Jun;1868(7):119018. doi: 10.1016/j.bbamcr.2021.119018.

Roy S, Goel R, Aggarwal S, Asthana S, Yadav AK, Awasthi A. Proteome analysis revealed the essential functions of protein phosphatase PP2A in the induction of Th9 cells. Sci Rep. 2020 Jul 3;10(1):10992. doi: 10.1038/s41598-020-67845-2.

Rizvi ZA, Dalal R, Sadhu S, Kumar Y, Srivastava T, Gupta SK, Agarwal S, Tripathy MR, Yadav AK, Medigeshi GR, Pandey AK, Samal S, Asthana S, Awasthi A. Immunological and cardio-vascular pathologies associated with SARS-CoV-2 infection in golden Syrian hamster. bioRxiv (2021). doi: https://doi.org/10.1101/2021.01.11.426080

Reid R, Chatterjee B, Das SJ, Ghosh S, Sharma TK. Application of aptamers as molecular recognition elements in lateral flow assays. Anal Biochem. 2020 Mar 15;593:113574. doi: 10.1016/j.ab.2020.113574.

Raj S, Chandel V, Kumar A, Kesari KK, Asthana S, Ruokolainen J, Kamal MA, Kumar D. Molecular mechanisms of interplay between autophagy and metabolism in cancer. Life Sci. 2020 Oct 15;259:118184. doi: 10.1016/j.lfs.2020.118184. 

Prakash C, Pandey M, Talwar S, Singh Y, Kanojiya S, Pandey AK, Kumar N. Extra-ribosomal functions of Mtb RpsB in imparting stress resilience and drug tolerance to mycobacteria. Biochimie. 2020 Oct;177:87-97. doi: 10.1016/j.biochi.2020.08.007.

Perween R, Ahmed S, Shrivastava T, Parray HA, Singh B, Pindari KS, Sharma C, Shukla S, Sinha S, Panchal AK, Kumar R. A rapid novel strategy for screening of antibody phage libraries for production, purification, and functional characterization of amber stop codons containing single-chain antibody fragments. Biotechnol Prog. 2021 Feb 23:e3136. doi: 10.1002/btpr.3136. 

Paul, A., Chatterjee, S., & Bairagi, N. Prediction on COVID-19 epidemic for different countries: Focusing on South Asia under various precautionary measures. medRxiv. (2020). doi: https://doi.org/10.1101/2020.04.08.20055095

Paul A, Anand R, Karmakar SP, Rawat S, Bairagi N, Chatterjee S. Exploring gene knockout strategies to identify potential drug targets using genome-scale metabolic models. Sci Rep. 2021 Jan 8;11(1):213. doi: 10.1038/s41598-020-80561-1.

Parray HA, Chiranjivi AK, Asthana S, Yadav N, Shrivastava T, Mani S, Sharma C, Vishwakarma P, Das S, Pindari K, Sinha S, Samal S, Ahmed S, Kumar R. Identification of an anti-SARS-CoV-2 receptor-binding domain-directed human monoclonal antibody from a naïve semisynthetic library. J Biol Chem. 2020 Sep 4;295(36):12814-12821. doi: 10.1074/jbc.AC120.014918. 

Meena CL, Singh P, Shaliwal RP, Kumar V, Kumar A, Tiwari AK, Asthana S, Singh R, Mahajan D. Synthesis and evaluation of thiophene based small molecules as potent inhibitors of Mycobacterium tuberculosis. Eur J Med Chem. 2020 Dec 15;208:112772. doi: 10.1016/j.ejmech.2020.112772. 

Mishra A, Behura A, Kumar A, Ghosh A, Naik L, Mawatwal S, Mohanty SS, Mishra A, Saha S, Bhutia SK, Singh R, Dhiman R. Soybean lectin induces autophagy through P2RX7 dependent activation of NF-κB-ROS pathway to kill intracellular mycobacteria. Biochim Biophys Acta Gen Subj. 2021 Feb;1865(2):129806. doi: 10.1016/j.bbagen.2020.129806.

Mittal L, Kumari A, Suri C, Bhattacharya S, Asthana S. Insights into structural dynamics of allosteric binding sites in HCV RNA-dependent RNA polymerase. J Biomol Struct Dyn. 2020 Apr;38(6):1612-1625. doi: 10.1080/07391102.2019.1614480. 

Mittal A, Gupta A, Kumar S, Surjit M, Singh B, Soneja M, Soni KD, Khan AR, Singh K, Naik S, Kumar A, Aggarwal R, Nischal N, Sinha S, Trikha A, Wig N. Gargle lavage as a viable alternative to swab for detection of SARS-CoV-2. Indian J Med Res. 2020 Jul & Aug;152(1 & 2):77-81. doi: 10.4103/ijmr.IJMR_2987_20.

Mehdi F, Chattopadhyay S, Thiruvengadam R, Yadav S, Kumar M, Sinha SK, Goswami S, Kshetrapal P, Wadhwa N, Chandramouli Natchu U, Sopory S, Koundinya Desiraju B, Pandey AK, Das A, Verma N, Sharma N, Sharma P, Bhartia V, Gosain M, Lodha R, Lamminmäki U, Shrivastava T, Bhatnagar S, Batra G. Development of a fast SARS-CoV-2 IgG ELISA, based on receptor-binding domain, and its comparative evaluation using temporally segregated samples from RT-PCR positive individuals. Front Microbiol. 2021 Jan 20;11:618097. doi: 10.3389/fmicb.2020.618097.

Martiskainen I, Talha SM, Vuorenpää K, Salminen T, Juntunen E, Chattopadhyay S, Kumar D, Vuorinen T, Pettersson K, Khanna N, Batra G. Upconverting nanoparticle reporter-based highly sensitive rapid lateral flow immunoassay for hepatitis B virus surface antigen. Anal Bioanal Chem. 2021 Feb;413(4):967-978. doi: 10.1007/s00216-020-03055-z.

Martiskainen I, Juntunen E, Salminen T, Vuorenpää K, Bayoumy S, Vuorinen T, Khanna N, Pettersson K, Batra G, Talha SM. Double-antigen lateral flow immunoassay for the detection of anti-HIV-1 and -2 antibodies using upconverting nanoparticle reporters. Sensors (Basel). 2021 Jan 6;21(2):330. doi: 10.3390/s21020330. 

Majumdar S, Verma R, Saha A, Bhattacharyya P, Maji P, Surjit M, Kundu M, Basu J, Saha S. Perspectives about modulating host immune system in targeting SARS-CoV-2 in India. Front Genet. 2021 Feb 16;12:637362. doi: 10.3389/fgene.2021.637362. 

Malladi SK, Singh R, Pandey S, Gayathri S, Kanjo K, Ahmed S, Khan MS, Kalita P, Girish N, Upadhyaya A, Reddy P, Pramanick I, Bhasin M, Mani S, Bhattacharyya S, Joseph J, Thankamani K, Raj VS, Dutta S, Singh R, Nadig G, Varadarajan R. Design of a highly thermotolerant, immunogenic SARS-CoV-2 spike fragment. J Biol Chem. 2020 Nov 5;296:100025. doi: 10.1074/jbc.RA120.016284.

Mahla RS, Kumar A, Tutil H, Krishnaji ST, Sathyamoorthy B, Noursadeghi M, Breuer J, Pandey AK, Kumar H. Essential role of NIX in metabolic reprogramming for macrophage plasticity during mycobacterial species infection. Tuberculosis (2021), Vol 126, https://doi.org/10.1016/j.tube.2020.102046.

Maddipati VC, Mittal L, Mantipally M, Asthana S, Bhattacharyya S, Gundla R. A review on the progress and prospects of Dengue drug discovery targeting NS5 RNA- Dependent RNA Polymerase. Curr Pharm Des. 2020;26(35):4386-4409. doi: 10.2174/1381612826666200523174753.

Lunge A, Gupta R, Choudhary E, Agarwal N. The unfoldase ClpC1 of Mycobacterium tuberculosis regulates the expression of a distinct subset of proteins having intrinsically disordered termini. J Biol Chem. 2020 Jul 10;295(28):9455-9473. doi: 10.1074/jbc.RA120.013456. 

Kumari S, Katare PB, Elancheran R, Nizami HL, Paramesha B, Arava S, Sarma PP, Kumar R, Mahajan D, Kumar Y, Devi R, Banerjee SK. Musa balbisiana fruit rich in polyphenols attenuates isoproterenol-induced cardiac hypertrophy in rats via inhibition of inflammation and oxidative stress. Oxid Med Cell Longev. 2020 Jan 27;2020:7147498. doi: 10.1155/2020/7147498.

Kumari A, Mittal L, Srivastava M, Asthana S. Binding mode characterization of 13b in the monomeric and dimeric states of SARS-CoV-2 main protease using molecular dynamics simulations. J Biomol Struct Dyn. 2021 May 24:1-19. doi: 10.1080/07391102.2021.1927844.

Kumari A, Pal Pathak D, Asthana S. Bile acids mediated potential functional interaction between FXR and FATP5 in the regulation of Lipid Metabolism. Int J Biol Sci. 2020 Jun 14;16(13):2308-2322. doi: 10.7150/ijbs.44774.

Kumar R, Shrivastava T, Samal S, Ahmed S, Parray HA. Antibody-based therapeutic interventions: possible strategy to counter chikungunya viral infection. Appl Microbiol Biotechnol. 2020 Apr;104(8):3209-3228. doi: 10.1007/s00253-020-10437-x.

Kumar P, Mukherjee A, Randev S, Medigeshi GR, Jat KR, Kapil A, Lodha R, Kabra SK. Epidemiology of coronavirus infection in children and their impact on lung health: Finding from a birth cohort study. Pediatr Infect Dis J. 2020 Dec;39(12):e452-e454. doi: 10.1097/INF.0000000000002884.

Kumar B, Dey AK, Saha S, Singh AK, Kshetrapal P, Wadhwa N, Thiruvengadam R, Desiraju BK, Bhatnagar S, Salunke DM, Rashid F, Malakar D, Maiti TK; GARBH-Ini Study Group. Dynamic alteration in the vaginal secretory proteome across the early and mid-trimesters of pregnancy. J Proteome Res. 2021 Feb 5;20(2):1190-1205. doi: 10.1021/acs.jproteome.0c00433.

Kumar A, Singh R, Kaur J, Pandey S, Sharma V, Thakur L, Sati S, Mani S, Asthana S, Sharma TK, Chaudhuri S, Bhattacharyya S, Kumar N. Wuhan to world: The COVID-19 pandemic. Front Cell Infect Microbiol. 2021 Mar 30;11:596201. doi: 10.3389/fcimb.2021.596201.

Kumar A, Midha MK, Rao KV. THP1 proteomics in response to mycobacterium tuberculosis infection. Data Brief. 2021 Jan 30;35:106803. doi: 10.1016/j.dib.2021.106803.

Kumar A, Kumar Y, Sevak JK, Kumar S, Kumar N, Gopinath SD. Metabolomic analysis of primary human skeletal muscle cells during myogenic progression. Sci Rep. 2020 Jul 16;10(1):11824. doi: 10.1038/s41598-020-68796-4.

Kumar A, Das B., Kumar N. Vibrio Pathogenicity Island-1: The master determinant of cholera pathogenesis. Front Cell Infect Microbiol. 2020 Oct 6;10:561296. doi: 10.3389/fcimb.2020.561296.

Kuila B, Sharma P, Mahajan D, Singh P, Bhargava G. Rhodium-catalysed chemo-and regio-selective [3+ 2+ 2] cycloadditions of bis (methylenecyclopropanes) and alkynes: Synthesis of spirocyclic 5–7 condensed cycloheptenes. Synthetic Communication. 2020, 50 (6), 840. doi: https://doi.org/10.1080/00397911.2020.1720738

Khan ZA, Mondal G, Sharma C, Falak S, Ansari A, Chattoraj A. Role of melatonin in preterm birth. Chronobiol Med. 2020;2(4):148-154. doi: https://doi.org/10.33069/cim.2020.0024

Khan ZA, Falak S, Raghav A, Sharma C, Chattoraj A. Risk of COVID-19 among the LGBTQ population. KJPH. 2020; 57(1):20-23

Khan Z, Kaur T, Sharma C. Expression and purification of Histidine-tagged Salmonella typhi Cell invasion protein (SipC) and its diagnostic utility. J Appl. Biochem. Lab. Med. 2020; 01:21-27. 

Kedia S, Ghosh TS, Jain S, Desigamani A, Kumar A, Gupta V, Bopanna S, Yadav DP, Goyal S, Makharia G, Travis SPL, Das B, Ahuja V. Gut microbiome diversity in acute severe colitis is distinct from mild to moderate ulcerative colitis. J Gastroenterol Hepatol. 2021 Mar;36(3):731-739. doi: 10.1111/jgh.15232.

Kaushik N, Lamminmäki U, Khanna N, Batra G. Enhanced cell density cultivation and rapid expression-screening of recombinant Pichia pastoris clones in microscale. Sci Rep. 2020 May 4;10(1):7458. doi: 10.1038/s41598-020-63995-5.

Kaur T, Kapila S, Kapila R, Kumar S, Upadhyay D, Kaur M, Sharma C. Tmprss2 specific miRNAs as promising regulators for SARS-CoV-2 entry checkpoint. Virus Res. 2021 Mar;294:198275. doi: 10.1016/j.virusres.2020.198275.

Kaur T, John AA, Sharma C, Vashisht NK, Singh D, Kapila R, Kapila S. miR300 intervenes Smad3/β-catenin/RunX2 crosstalk for therapy with an alternate function as indicative biomarker in osteoporosis. Bone. 2021 Feb;143:115603. doi: 10.1016/j.bone.2020.115603.

Jain N, Mishra SK, Shankar U, Jaiswal A, Sharma TK, Kodgire P, Kumar A. G-quadruplex stabilization in the ions and maltose transporters gene inhibit Salmonella enterica growth and virulence. Genomics. 2020 Nov;112(6):4863-4874. doi: 10.1016/j.ygeno.2020.09.010.

Jadhav PV, Sinha VK, Chugh S, Kotyada C, Bachhav D, Singh R, Rothweiler U, Singh M. 2.09 A resolution structure of E. coli HigBA toxin-antitoxin complex reveals an ordered DNA-binding domain and intrinsic dynamics in antitoxin. Biochem J. 2020 Oct 30;477(20):4001-4019. doi: 10.1042/BCJ20200363.

Hingankar N, Mullick R, Sutar J, Deshpande S, Morris L, Sok D, Bhattacharya J. Variation in neutralization susceptibility of HIV-1 Indian Subtype C to potent and broadly neutralizing monoclonal antibodies (bnAbs) having distinct epitope specificities. Journal of the International AIDS Society. 2021.  https://onlinelibrary.wiley.com/doi/epdf/10.1002/jia2.25659.  Proceedings of the 4th HIV Research for Prevention Conference (HIVR4P)

Hingane S, Joshi N, Surjit M, Ranjith-Kumar CT. Hepatitis E virus ORF2 inhibits RIG-I mediated interferon response. Front Microbiol. 2020 Apr 15;11:656. doi: 10.3389/fmicb.2020.00656.

Harrison SP, Siller R, Tanaka Y, Xiang Y, Patterson B, Kempf H, Melum E, Åsrud KS, Chollet ME, Andersen E, Sandset PM, Baumgarten S, Bonanini F, Kurek D, Mathapati S, Almaas R, Sharma K, Wilson SR, Skottvoll FS, Boger IC, Bogen IL, Nyman TA, Wu JJ, Bezrouk A, Cizkova D, Mokry J, Zweigerdt R, Park I, Sullivan GJ. Scalable production of tissue-like vascularised liver organoids from human PSCs. bioRxiv; 2020. doi: 10.1101/2020.12.02.406835.  

Gupta V, Mehta P, Kumar A, Chaudhary M, Diyundi SC, Sehajpal PK, Thangaraj K, Singh R. c.29C>T polymorphism in the TGF-β1 gene correlates with increased risk of End Stage Renal Disease: original study and meta-analysis. Meta Gene (2020), Vol. 25: 100703. doi: https://doi.org/10.1016/j.mgene.2020.100703

Ghose A, Bhattacharya S, Karthikeyan AS, Kudale AM, Monteiro JM, Joshi A, Medigeshi GR, Kang G, Bal V, Rath S, Shashidhara LS, John J, Chaudhuri S, Nagarkar A. Community prevalence of antibodies to SARS-CoV-2 and correlates of protective immunity in five localities in an Indian metropolitan city. medRxiv 2020 Pages 2020.11.17.20228155. doi: 10.1101/2020.11.17.20228155.

Dey AK, Kumar B, Singh AK, Ranjan P, Thiruvengadam R, Desiraju BK, Kshetrapal P, Wadhwa N, Bhatnagar S, Rashid F, Malakar D, Salunke DM, Maiti TK; GARBH-Ini Study Group*. Salivary proteome signatures in the early and middle stages of human pregnancy with term birth outcome. Sci Rep. 2020 May 15;10(1):8022. doi: 10.1038/s41598-020-64483-6.

Devi TB, Devadas K, George M, Gandhimathi A, Chouhan D, Retnakumar RJ, Alexander SM, Varghese J, Dharmaseelan S, Chandrika SK, Jissa VT, Das B, Nair GB, Chattopadhyay S. Low Bifidobacterium abundance in the lower gut microbiota is associated with Helicobacter pylori-related gastric ulcer and gastric cancer. Front Microbiol. 2021 Feb 26;12:631140. doi: 10.3389/fmicb.2021.631140. 

Deshpande S, Mullick R, Sutar J, Patil S, Murugavel KG, Srikrishnan AK, Goyal R, Bhattacharya J. Subtle variations in HIV-1 subtype C env sequence features obtained from a slow progressing Indian donor and their association with sensitivity to neutralizing antibodies with distinct epitope specificities. Journal of the International AIDS Society. 2021. https://onlinelibrary.wiley.com/doi/epdf/10.1002/jia2.25659. Proceedings of the 4th HIV Research for Prevention Conference (HIVR4P).

Das S, Kumar R, Ahmed S, Parray HA, Samal S. Efficiently cleaved HIV-1 envelopes: can they be important for vaccine immunogen development? Ther Adv Vaccines Immunother. 2020 Oct 8;8:2515135520957763. doi: 10.1177/2515135520957763.

Das S. Taking a re-look at cap-binding signatures of the mRNA cap-binding protein eIF4E orthologues in trypanosomatids. Mol Cell Biochem. 2021 Feb;476(2):1037-1049. doi: 10.1007/s11010-020-03970-w.

Das PN, Kumar A, Bairagi N, Chatterjee S. Effect of delay in transportation of extracellular glucose into cardiomyocytes under diabetic condition: a study through mathematical model. J Biol Phys. 2020 Sep;46(3):253-281. doi: 10.1007/s10867-020-09551-8.

Choudhary E, Bullen CK, Goel R, Singh AK, Praharaj M, Thakur P, Dhiman R, Bishai WR, Agarwal N. Relative and quantitative phosphoproteome analysis of macrophages in response to infection by virulent and avirulent Mycobacteria reveals a distinct role of the cytosolic RNA sensor RIG-I in Mycobacterium tuberculosis pathogenesis. J Proteome Res. 2020 Jun 5;19(6):2316-2336. doi: 10.1021/acs.jproteome.9b00895. 

Chaudhuri S, Thiruvengadam R, Chattopadhyay S, Mehdi F, Kshetrapal P, Shrivastava T, Desiraju BK, Batra G, Kang G, Bhatnagar S; DBT India consortium for COVID-19 research. Comparative evaluation of SARS-CoV-2 IgG assays in India. J Clin Virol. 2020 Oct;131:104609. doi: 10.1016/j.jcv.2020.104609 

Chaudhary D, Marzuki M, Lee A, Bouzeyen R, Singh A, Gosain TP, Kidwai S, Grady C, Tsotetsi K, Chawla K, Shihui F, Lum J, Gupta SK, Agarwal N, Tsenova L, Kumar Y, Lee B, Kumar P, Thakur KG, Singh R, Singhal A. Disulfiram inhibits M. tuberculosis growth by altering methionine pool, redox status and host-immune response. bioRxiv 2020.09.01.277368; doi: https://doi.org/10.1101/2020.09.01.277368

Chatterjee B, Kalyani N, Anand A, Khan E, Das S, Bansal V, Kumar A, Sharma TK. GOLD SELEX: a novel SELEX approach for the development of high-affinity aptamers against small molecules without residual activity. Mikrochim Acta. 2020 Oct 19;187(11):618. doi: 10.1007/s00604-020-04577-0.

Chandel V, Srivastava M, Srivastava A, Asthana S, Kumar D. In-silico interactions of active phytochemicals with c-MYC EGFR and ERBB2 oncoproteins. Chem. Biol.  Letters 2020; 7 (1), 47-54.

Bosch I, Reddy A, de Puig H, Ludert JE, Perdomo-Celis F, Narváez CF, Versiani A, Fandos D, Nogueira ML, Singla M, Lodha R, Medigeshi GR, Lorenzana I, Ralde HV, Gélvez-Ramírez M, Villar LA, Hiley M, Mendoza L, Salcedo N, Herrera BB, Gehrke L. Serotype-specific detection of dengue viruses in a nonstructural protein 1-based enzyme-linked immunosorbent assay validated with a multi-national cohort. PLoS Negl Trop Dis. 2020 Jun 24;14(6):e0008203. doi: 10.1371/journal.pntd.0008203. 

Borkar RM, Gajji S, Mohammed SA, Srivastava M, Reddy VG, Jala A, Asthana S, Kamal A, Banerjee SK, Ragampeta S. Identification and characterization of in vitro and in vivo fidarestat metabolites: Toxicity and efficacy evaluation of metabolites. J Mass Spectrom. 2021 Feb;56(2):e4694. doi: 10.1002/jms.4694.

Bhattacharya J, Chandrawacar AS, Dhiman K, Ozorowski G, Sewall LM, Cottrell CA, Hingankar N, Kumar R, Deshpande S, Murugavel KG, Srikrishnan AK, Ashish, Ward AB. Structural features of a novel HIV-1 Indian clade C trimeric soluble Env SOSIP and the polyclonal neutralizing antibody responses developed in vaccinated rabbits. Journal of the International AIDS Society. 2021. https://onlinelibrary.wiley.com/doi/epdf/10.1002/jia2.25659. Proceedings of the 4th HIV Research for Prevention Conference (HIVR4P).

Anantharaj A, Gujjar S, Kumar S, Verma N, Wangchuk J, Khan NA, Panwar A, Kanakan A, Vasudevan AV, Das JS, Pandey A, Pandey AK, Pandey R, Medigeshi GR. Kinetics of viral load, immunological mediators and characterization of a SARS-CoV-2 isolate in mild COVID-19 patients during acute phase of infection. medRxiv 2020.11.05.20226621. doi: 10.1101/2020.11.05.20226621.

Anantharaj A, Das SJ, Sharanabasava P, Lodha R, Kabra SK, Sharma TK, Medigeshi GR. Visual detection of SARS-CoV-2 RNA by conventional PCR-induced generation of DNAzyme sensor. Front Mol Biosci. 2020 Dec 23;7:586254. doi: 10.3389/fmolb.2020.586254.

Ahmed S, Shrivastava T, Kumar R, Kumar M, Banerjee M, Kumar N, Bansal M, Das S, Samal S. Design and characterization of a germ-line targeting soluble, native-like, trimeric HIV-1 Env lacking key glycans from the V1V2-loop. Biochim Biophys Acta Gen Subj. 2021 Jan;1865(1):129733. doi: 10.1016/j.bbagen.2020.129733.

Aggarwal H, Pathak P, Singh P, Gayen JR, Jagavelu K, Dikshit M. Systemic insulin resistance and metabolic perturbations in chow fed inducible Nitric Oxide Synthase knockout male mice: Partial reversal by nitrite supplementation. Antioxidants (Basel). 2020 Aug 12;9(8):736. doi: 10.3390/antiox9080736.

Agarwal S, Sharma A, Bouzeyen R, Deep A, Sharma H, Mangalaparthi KK, Datta KK, Kidwai S, Gowda H, Varadarajan R, Sharma RD, Thakur KG, Singh R. VapBC22 toxin-antitoxin system from Mycobacterium tuberculosis is required for pathogenesis and modulation of host immune response. Sci Adv. 2020 Jun 3;6(23):eaba6944. doi: 10.1126/sciadv.aba6944.

Agarwal N. Construction of a novel CRISPRi-based tool for silencing of multiple genes in Mycobacterium tuberculosis. Plasmid. 2020 Jul;110:102515. doi: 10.1016/j.plasmid.2020.102515.

Das S, Kumar R, Ahmed S, Parray HA, Samal S  Efficiently cleaved HIV-1 envelopes: Can they be important for vaccine immunogen design? Therapeutic Advances in Vaccines and Immunotherapy 2020; 8: 1-17.

Alvarez-Silva C. Kashani A. Hansen T.H. Pinna N.K. Anjana R.M. Dutta A. Saxena S. Stoy J. Kampmann U. Nielsen T. Jorgensen T. Gnanaprakash V. Gnanavadivel R. Sukumaran A. Rani C.S.S. Frch K. Radha V. Balasubramanyam M. Nair G.B. Das B. Vestergaard H. Hansen T. Mande S.S. Mohan V. Arumugam M. Pedersen O  Jan 2020  Transethnic gut microbiota signatures of type 2 diabetes in Denmark and India  Genome Medicine  10.1186/s13073-021-00856-4 

Will R.C. Ramamurthy T. Sharma N.C. Balaji V. Pragasam A. Vasudevan K. Kumar D. Das D. Heinz E. Melnikov V. Sangal V. Dougan G. Mutreja A  Jan 2020  Spatiotemporal persistence of multiple diverse clones and toxins of Corynebacterium diphtheria. Nature communication  Nature communication  10.1038/s41467-021-21870-5 

Pinna N.K. Anjana R. M. Saxena S. Dutta A. Gnanaprakash V. Gnanavadivel R. Sukumaran A. Raghavan S. Subramanian C. Rani S. Radha V. Balasubramanyam M. Pant A. Nielsen T. Jorgensen T. Frch K. Kashani A. Camila M. Silva A. Vestergaard H. Haldor T.H. Hansen T. Arumugam T. Nair G.B. Das B. Pedersen O. Mohan V. Mande S.  Jan 2020  Trans-ethnic gut microbial signatures of prediabetic subjects from India and Denmark  Genome Medicine  10.1186/s13073-021-00851-9

Rampal R Wari N Singh AK Das U Bopanna S Gupta V Nayak B Velapandian T Kedia S Kumar D Awasthi A Ahuja V.  March 2021  Retinoic Acid Is Elevated in the Mucosa of Patients With Active Ulcerative Colitis and Displays a Proinflammatory Role by Augmenting IL-17 and IFN Production.  Epub  10.1093/ibd/izaa121

Mittal L Srivastava M Kumari A Tonk RK Awasthi A Asthana S.  Jan 2021  Interplay among Structural Stability Plasticity and Energetics Determined by Conformational Attuning of Flexible Loops in PD-1.  Epub  10.1021/acs.jcim.0c01080 

Sakshi Talwar Manitosh Pandey Chandresh Sharma Rintu Kutum Josephine Lum Daniel Carbajo Renu Goel Michael Poidinger Debasis Dash Amit Singhal and Amit Kumar Pandey  2020  Role of VapBC12 Toxin-antitoxin locus in cholesterol induced mycobacterial persistence  mSystems  10.1128/mSystems.00855-20 

Dipanka Tanu Sarmah Nandadulal Bairagi and Samrat Chatterjee  Dec 2020  Tracing the footsteps of autophagy in computational biology  Briefings in Bioinformatics  10.1093/bib/bbaa286

Shivangi Mishra Jayesh Kumar Sevak G Aneeshkumar Arimbasseri Anamica Das Shinjini Bhatnagar and Suchitra D. Gopinath  Nov 2020  Umbilical cord tissue is a robust source for mesenchymal stem cells with enhanced myogenic differentiation potential compared to cord blood  Scientific Reports   

Archana Pant Satyabrata Bag Bipasa Saha Jyoti Verma Pawan Kumar Sayantan Banerjee Bhoj Kumar Yashwant Kumar Anbumani Desigamani Suhrid Maiti Tushar K Maiti Sanjay K Banerjee Rupak K Bhadra Hemanta Koley Shanta Dutta G. Balakrish Nair Thandavarayan Ramamurthy Bhabatosh Das    Molecular Insights into the genome dynamics and interactions between core and acquired genome of Vibrio cholerae  Proc Natl Acad Sci USA

Bhabatosh Das and Rupak K. Bhadra    pppGpp Metabolism and Antimicrobial Resistance in Bacterial Pathogens  Frontiers in Microbiology

Dipayan Rakshit Shreya Dasgupta Bhabatosh Das Rupak K. Bhadra    Functional insights into the role of gppA in pppGpp metabolism of Vibrio cholerae  Frontiers in Microbiology 

Samal  2020  Tetramerizing tGCN4 Domain Facilitates Production of Influenza A H1N1 M2e Higher Order Soluble Oligomers that Show Enhanced Immunogenicity In vivo  J. Biol. Chem.jbc  10.1074/jbc.RA120.013233 

Kumar A Kumar Y Kumar J Kumar S Kumar N and Gopinath S.D  Jul 2020  Metabolomic analysis of primary human skeletal muscle cellsduring myogenic progression  Scientific Reports  10.1038/s41598-020-68796-4 

Hilal Ahmed Parray1 Shivangi Shukla1 Sweety Samal Tripti Shrivastava Shubbir AhmedChandresh Sharma Rajesh Kumar  may 2020  Hybridoma technology a versatile method for isolation of monoclonalantibodies its applicability across species limitations advancement andfuture perspectives  ELSEVIER  10.1016/j.intimp.2020.106639 

Naseem Ahmed Khan Mohit Singla Sweety Samal Rakesh Lodha and Guruprasad R. Medigeshi  may 2020  Respiratory Syncytial Virus-Induced Oxidative Stress Leads to an Increase in Labile Zinc Pools in Lung Epithelial Cells  mSphere  10.1128/mSphere.00447-20

Mittal L Kumari A Srivastava M Singh M Asthana S  may 2020  Identification of potential molecules against COVID-19 main protease through structure-guided virtual screening approach.  Journal of Biomolecular Structure and Dynamics  10.1080/07391102.2020.1768151 

Aggarwal Suruchi Sanjay K. Banerjee Narayan Chandra Talukdar and Amit Kumar Yadav  May 2020  Post-translational modification crosstalk and hotspots in sirtuin interactors implicated in cardiovascular diseases  Frontiers in Genetics 11  10.3389/fgene.2020.00356/full 

Aggarwal Suruchi Ajay Kumar Shilpa Jamwal Mukul Kumar Midha Narayan Chandra Talukdar and Amit Kumar Yadav  May 2020  HyperQuantA Computational Pipeline for Higher Order Multiplexed Quantitative Proteomics.  Proteomics  10.1021/acsomega.0c00515 

Kumar A, Bag S, Das B., Novel genetic tool to study the stability of genomic islands., Recent Patents Biotechnology, 0.239, 12, 3, 200-207, 10.2174/1872208312666180223113618.

Dutta, A.K., Choudhary, E., Wang, X., Záhorszka, M., Forbak, M., Lohner, P., Jessen, H.J., Agarwal, N., Korduláková, J., and JessenTrefzer, C., Trehalose conjugation enhances toxicity of photosensitizers against mycobacteria., ACS Central Science, 12.685, 5, 4, 644-650, 10.1021/acscentsci.8b00962

 Choudhary, E., Sharma, R., Kumar, Y., Agarwal, N., Conditional Silencing by CRISPRi Reveals the Role of DNA Gyrase in Formation of Drug-Tolerant Persister Population in Mycobacterium tuberculosis, Front Cell Infect Microbiol., 5.79, 9, , 70, 10.3389/fcimb.2019.00070

Das R, Dhiman A, Mishra SK, Haldar S, Sharma N, Bansal A, Ahmad Y, Kumar A, Tyagi JS, Sharma TK. , Structural switching electrochemical DNA aptasensor for the rapid diagnosis of tuberculous meningitis., Int J Nanomedicine., 5.115, 14, , 2103-2113, 10.2147/IJN.S189127.

Pergu, R., Dagar, S., Kumar, H., Kumar, R.,Bhattacharya, J., and Mylavarapu, S.V.S. , The chaperone ERp29 is required for tunneling nanotube formation by stabilizing MSec., Journal of Biological Chemistry, 4.238, 294, 18, 7177-7193, 10.1074/jbc.RA118.005659

Negi, B., Poonam, P., Ansari, M.F., Kumar, D., Aggarwal, S., Singh, R., Azam, R., Rawat, D.S., Synthesis, antiamoebic activity and docking studies of metronidazole-triazole-styryl hybrids., European Journal of Medicinal Chemistry, 5.573, 150, , 633-641, 10.1016/j.ejmech.2018.03.033

Sadaf, S., Singh, A., Awasthi, D., Nagarkoti, S., Agrahari, A., Srivastava, R., Jagavelu, K., Kumar, S., Barthwal, M.K., and Dikshit, M., Augmentation of iNOS expression in myeloid progenitor cells expedites neutrophil differentiation, Journal of Leukocyte Biology, 3.757, 106, 2, 397-412, 10.1002/JLB.1A0918-349RR
 

Srivastava, M., Suri, C., Asthana, S., What modulates the Usp7 function:  A dynamic pocket or inter-regulatory domains? , Biophysical Journal, 3.854, 116, 3, 340a-341a, 

Tripathi, P., Sedimbi, S. K., Singh, A. K., Löfbom, L., Issazadeh-Navikas, S., Weiss, S., Förster, I., Karlsson, M., Yrlid, U., Kadri, N., & Cardell, S. L., Innate and adaptive stimulation of murine diverse NKT cells result in distinct cellular responses, European Journal of immunology, 4.404, 49, 3, 443-453, 10.1002/eji.201847647

Nagarkoti S, Sadaf S, Awasthi D, Chandra T, Jagavelu K, Kumar S, Dikshit M., L-Arginine and tetrahydrobiopterin supported nitric oxide production is crucial for the microbicidal activity of neutrophils. , Free Radic Res. , 4.1, 53, 3, 281-292, 10.1080/10715762.2019.1566605.

Hoh JK, Lappas M, Liu C, Qiao C, Pallavi K, Takeda J, Kim YJ., Preterm birth rate and dilemma of preterm labor treatment in Asia., Placenta, 3.177, 79, , 68-71, 10.1016/j.placenta.2019.01.005.

Mishra, S.K., Jain, N., Shankar, U., Tawani, A., Sharma, T.K., Kumar, A, Characterization of highly conserved G-quadruplex motifs as potential drug targets inStreptococcus pneumonia. , Scientific Reports, 3.998, 9, , 1791, https://doi.org/10.1038/s41598-018-38400-x

Tandon, H., Sharma, A., Sandhya, S., Srinivasan, N., Singh R, Mycobacterium tuberculosis Rv0366c-Rv0367c encodes a non-canonical PezAT-like toxin-antitoxin pair., Scientific Reports, 3.998, 9, 1163, , https://doi.org/10.1038/s41598-018-37473-y

Menon R, Debnath C, Lai A, Guanzon D, Bhatnagar S, Kshetrapal PK, Sheller-Miller S, Salomon C; Garbhini Study Team., Circulating Exosomal miRNA Profile During Term and Preterm Birth Pregnancies: A Longitudinal Study., Endocrinology, 5.399, 160, 2, 249-275, 10.1210/en.2018-00836.

Thakur, S.K., Srivastava, M., Kumar, A., Goel, R., Asthana, S., Eswaran, S.K., A Multidimensional Approach to Explore the Use of a Small Heterobifunctional Crosslinker based on a Metabolite of the Kynurenine Pathway, Journal of Proteomics and Bioinformation,, 0.41, 12, 1, 0010-0017, 10.4172/0974-276X.1000491

Roy, S., Rizvi, Z. A., Awasthi, A., Metabolic Checkpoints in Differentiation of Helper T Cells in Tissue Inflammation, Front Immunol, 4.716, 14, 9, 3036, https://doi.org/10.3389/fimmu.2018.03036.

Lavania S, Das R, Dhiman A, Myneedu VP, Verma A, Singh N, Sharma TK, Tyagi JS., Aptamer-Based TB Antigen Tests for the Rapid Diagnosis of Pulmonary Tuberculosis: Potential Utility in Screening for Tuberculosis., ACS Infect Dis, 4.614, 4, 12, 1718-1726, 10.1021/acsinfecdis.8b00201

Dhiman, A., Anand, A., Malhotra, A., Khan, E., Santra, V., Kumar, A., Sharma, T.K, Rational truncation of aptamer for cross-species application to detect krait envenomation, Scientific Reports, 3.998, , 12, 17795, 10.1038/s41598-018-35985-1.

Ojha, A., Bhasym, A., Mukherjee, S., Annarapu, G. K., Bhakuni, T., Akbar, I., Seth, T., Vikram, N. K., Vrati, S., Basu, A., Bhattacharyya, S., & Guchhait, P. , Platelet factor 4 promotes rapid replication and propagation of Dengue and Japanese encephalitis viruses, EBioMedicine, 2.617, 39, 332-347, , https://doi.org/10.1016/j.ebiom.2018.11.049.

Kaur, H., Kumar, A.,, Sharma, T.K, Analytical techniques for characterization of biological molecules – proteins and aptamers/oligonucleotides, Bioanalysis, 2.371, 11, 2, 103-117, https://doi.org/10.4155/bio-2018-0225.

Pandey, M., Talwar, S., Bose, S., Pandey, A.K., Iron homeostasis in Mycobacterium tuberculosis is essential for persistence., Scientific Reports,, 4.122, , 8, 17359, 10.1038/s41598-018-35012-3.

Rathore, D.K., Holmes, T.H., Nadeau, K.C., Mittal, P., Batra, A., Rosenberg-Hasson, Y., Sopory, S., Gupta, R., Chellani, H.K., Aggarwal, K.C., Bal, V., Natchu, U.C.M., Bhatnagar, S., Tavassoli, M., Lyell, D.J., Rath, S., Wadhwa, N., Maecker, H.T., Differences in multiple immune parameters between Indian and U.S. infants., PLoS One,, 2.776, 13, 11, e0207297, 10.1371/journal.pone.0207297.

Vinothkumar, K., Bhalara, S.R., Shah, A., Ramamurthy, T., Niyogi, S.K., Kumar, G.N., Bhardwaj, A.K., nvolvement of topoisomerase mutations and qnr and aac(6') Ib-cr genes in conferring quinolone resistance to THSTI ANNUAL REPORT 2018-2019 | 119 clinical isolates of Vibrio and Shigella spp. from Kolkata, India (1998-2009), Journal of Global Antimicrobial Resistance, 0.826, , 13, 85-90, 10.1016/j.jgar.2017.10.013.

Kumari, P., Lavania, S., Tyagi, S., Dhiman, A., Rath, D., Anthwal, D., Gupta, R.K., Sharma, N., Gadpayle, A.K., Taneja, R.S., Sharma, N., Sharma, T. K, Haldar, H., and Tyagi, J.S., A novel aptamer-based test for the rapid and accurate diagnosis of pleural tuberculosis., Analytical Biochemistry, 2.45, 1, , 564-565, 10.1016/j.ab.2018.10.019.

Sharma, S., Tripathi, P., Gut microbiome and type 2 diabetes: where we are and where to go?, J Nutr Biochem. , 4.49, 63, , 101-108, 10.1016/j.jnutbio.2018.10.003.

Chowdhury, K., Kumar, S., Sharma, T., Sharma, A., Bhagat, M., Kamai, A., Asthana, S., Mondal, M., Presence of a consensus DNA motif at nearby DNA sequence of the mutation susceptible CG nucleotides, Gene, 0.53, , 639, 85-95, 10.1016/j.gene.2017.10.001.

Fais, A., Era, B., Asthana, S., Sogos, V., Medda, R., Santana, L., Uriarte, E, Coumarin derivatives as promising xanthine oxidase inhibitors., International Journal of Biological Macromolecules, 4.784, , 120, 1286-1293, 10.1016/j.ijbiomac.2018.09.001.

Singh, A.K., Tripathi, P., Cardell, S.L., Type II NKT cells: an elusive population with immunoregulatory properties, Frontiers in Immunology, 4.716, , 9, 1969, 10.3389/fimmu.2018.01969.

Atmakuri, K., Penn-Nicholson, A., Tanner, R., Dockrell, H.M, Meeting report: 5th Global Forum on TB Vaccines,, Tuberculosis,, 1.26, , 113, 55-64, 10.1016/j.tube.2018.08.013.

Kalra, P., Mishra, S.K., Kaur, S., Prasad, H.P., Kumar, A., Sharma, T.K., Tyagi, J.S., G-quadruplex forming DNA aptamers inhibit DNA-binding function of HupB (Rv2986c) and Mycobacterium tuberculosis entry into host cells., Molecular Therapy Nucleic Acids, 2.77, 13, 99-109, 10.1016/j.omtn.2018.08.011.

Mawatwal, S., Behura, A., Mishra, A., Singh, R., Dhiman, R., Calcimycin induced IL-12 production inhibits intracellular mycobacterial growth by enhancing autophagy., Cytokine,, 3.078, , 111, 1 to 12, 10.1016/j.cyto.2018.07.033.

Kumar, R., Qureshi, H., Deshpande, S., Bhattacharya J, Broadly neutralizing antibodies in HIV-1 treatment and prevention., Therapeutic Adv Vaccines and Immunotherapy,, _, 4, 6, 61-68, 10.1177/2515135518800689.

Sharma, T., Sharma, C., Sankhyan, A., Bedi, S.P., Bhatnagar, S., Khanna, N., Gautam, V., Sethi, S., Vrati, S., Tiwari, A., Serodiagnostic evaluation of recombinant CdtB of S. Typhi as a potential candidate for acute typhoid. I, Immunology Research, 2.88, 4, 66, 503-512, 10.1007/s12026-018-9009-4.

Dhiman, A., Haldar, S., Mishra, S.K., Sharma, N., Bansal, A., Ahmad, Y., Kumar, A., Sharma, T.K., Tyagi, J.S., Generation and application of DNA aptamers against HspX for accurate diagnosis of tuberculous meningitis, Tuberculosis, 0.38, , 112, 27-36, 10.1016/j.tube.2018.07.004

Chawla, A.S., Kanodia, P., Mukherjee, A., Jain, V., Kaur, G., Coshic, P., Chatterjee, K., Wadhwa, N., Natchu, U.C.M., Sopory, S., Bhatnagar, S., Majumder, P.P., George, A., Bal, V., Rath, S., Prabhu, S.B, Cell-intrinsic regulation of peripheral memory-phenotype T cell frequencies., PLoS One, 2.74, 12, 13, e0200227, 

Kaur, H., Bruno, J.G., Sharma, T.K, Aptamers in the Therapeutics and Diagnostics Pipelines., Theranostics, 8.063, , 8, 4016-4032, 10.7150/thno.25958.

Anang, S., Kaushik, N., Surjit, M. , Recent advances towards the development of a potent antiviral against the Hepatitis E virus, Journal of Clinical and Translational Hepatology, 4.18, , 6, 44013, 10.14218/JCTH.2018.00005.

Kaushik, N., Anang, S., Ganti, K.P., Surjit, M., Zinc: A potential antiviral against hepatitis E virus infection?, DNA and Cell Biology,, 2.918, , 37, 593-599, 10.1089/dna.2018.4175.

Wilhelmson, A.S., Stubelius Fogelstrand, A.P., Rodriguez, M.L., Johansson, M.E., Fagman, J.B., Duhlin, A., Tripathi, P., Camponeschi, A., Rolink, A.G., Giwercman, A., Nissbrandt, H., Carlsten, H., Mårtensson, I.L., Karlsson, M.C.I., Tivesten, Å., Testosterone is an endogenous regulator of BAFF and splenic B-cell number., Nature Communication, 11.878, 1, 9, 2067, 10.1038/s41467-018-04408-0

Galhotra, P., Prabhakar, P., Meghwani, H., Mohammed, S.A.,  Banerjee, S.K., Seth, S., Hote, M.P., Reeta, K.H., Ray, R., Maulik, S.K., Beneficial effects of fenofibrate in pulmonary hypertension in rats, Molecular and Cellular Biochemistry,, 1.59, , 120, 1286-1293, 10.1007/s11010-018-3355-3.

Dhiman, R., Singh, R, Recent advances for identification of new scaffolds and drug targets for Mycobacterium tuberculosis., IUBMB Life,, 3.051, , 70, 905-916, 10.1002/iub.1863.

Kalra P, Dhiman A, Cho WC, Bruno JG, Sharma TK., Simple methods and rational design for enhancing aptamer sensitivity and specificity., Frontiers in Molecular Biosciences, 3..565, , 5, 41, 10.3389/fmolb.2018.00041.

Jha, B., Kumar, D., Sharma, A., Dwivedy, A., Singh, R., Biswal, B. K, . Identification and structural characterization of a histidinol phosphate phosphatase from Mycobacterium tuberculosis, Journal of Biological Chemistry, 4.106, 26, 293, 10102-10118, 10.1074/jbc.RA118.002299.

Boliar, S., Patil, S., Shukla, B.N., Ghobbeh, A.,Deshpande, S., Chen, W., Guenaga, J., Dimitrov, D.S., Wyatt, R.T., Chakrabarti, B.K. , Ligand accessibility to the HIV-1 Env co-receptor binding site can occur prior to CD4 engagement and is independent of viral tier category, Virology, 519, 99-105, 10.1016/j.virol.2018.04.002.

Malik, S., Awasthi, A., Transcriptional Control of Th9 Cells: Role of Foxo1 in Interleukin-9 Induction., Frontiers in Immunology, 4.716, 9, , 995, 10.3389/fimmu.2018.00995.

Agarwal S, Tiwari P, Deep A, Kidwai S, Gupta S, Thakur KG, Singh R., System-Wide Analysis Unravels the Differential Regulation and In Vivo Essentiality of Virulence-Associated Proteins B and C Toxin-Antitoxin Systems of Mycobacterium tuberculosis. , The Journal of infectious diseases, 5, 217, 11, 1809-1820, 10.1093/infdis/jiy109.

Mandal H, Katiyar SS, Swami R, Kushwah V, Katare PB, Kumar Meka A, Banerjee SK, Popat A, Jain S., ε-Poly-l-Lysine/plasmid DNA nanoplexes for efficient gene delivery in vivo., Int J Pharm, 5.827, 542, 1-2, 142-152, 10.1016/j.ijpharm.2018.03.021

Sarkar S, Das B, Banerjee SK, Insights into the human gut microbiome and cardiovascular diseases., Journal of Practice in Cardiology Science, 4.039, 4, 1, 41913, 10.4103/jpcs.jpcs_18_18.

Gupta N, Duggal S, Kumar A, Saquib NM, Rao KVS., Concurrent interactome and metabolome analysis reveals role of AKT1 in central carbon metabolism., BMC Research Notes, 1.09, , 11, 270, 10.1186/s13104-018-3364-z.

Meghwani, H., Prabhakar, P., Mohammed, S.A., Dua, P., Seth, S., Hote, M.P., Banerjee, S.K., Arava, S., Ray, R., Maulik, S.K., Beneficial Effect of Ocimum sanctum (Linn) against Monocrotalin Induced Pulmonary Hypertension in Rats., Medicines (Basel), 2, 5, , 10.3390/medicines5020034.

Bagri NK, Bagri N, Jana M, Gupta AK, Wadhwa N, Lodha R, Kabra SK, Chandran A, Aneja S, Chaturvedi MK, Sodhi J, Fitzwater SP, Chandra J, Rath B, Kainth US, Saini S, Black RE, Santosham M, Bhatnagar S, Efficacy of oral zinc supplementation in radiologically confirmed pneumonia: secondary analysis of a randomized controlled trial, Journal of Tropical Pediatrics, 0.7, 64, 2, 110-117, 10.1093/tropej/fmx036.

Bhattacharya J  December 2018  HIV prevention treatment strategies - Current challenges future prospects  Indian J Med Res.  10.4103/0971-5916.252150 

Ramani S; Stewart J C; Laucirica R D; Ajami J N; Robertson B; Autran A C; Shinge D; Rani S Anandan S; Hu l; Ferreon C J; Kuruvilla A K; Petrosino F J; Prasad V V B; Bode L; Kang G; Estes K M   November 2018  Human milk oligosaccharides milk microbiome and infant gut microbiome modulate neonatal rotavirus infection  Nature Communication  10.1038/s41467-018-07476-4 

Singhal R; Rathore D K; Bhakuni T; Seth T; Guchhait P  March 2019  Absence of Nonclassical Monocytes in Hemolytic Patients Free Hb and NO-Mediated Mechanism  Journal of Immunology Research  10.1155/2019/1409383 

Shet A; Kang G  March 2019  Dengue in India towards a better understanding of priorities and progress  International Journal of Infectious Diseases  10.1016/j.ijid.2019.03.008 

Verma J; Bag S; Saha B; Kumar P; Ghosh T S; Dayal M; Dey P; Anbumani D; Kumar D; Rana P; Kumar B; Maiti T; Sharma N C; Bhadra R K; Mutreja A; Nair G B; Ramamurthy T; Das B  March 2019  Genomic plasticity associated with antimicrobial resistance in Vibrio cholerae  Proc. Natl. Acad. Sci USA  10.1073/pnas.1900141116 

Ghosh P; Sinha R; Samanta P; Saha DR; Koley H; Dutta S; Okamoto K; Ghosh A; Ramamurthy T; Mukhopadhyay AK  February 2019  Haitian Variant Vibrio cholerae O1 Strains Manifest Higher Virulence in Animal Models  Front Microbiol  10.3389/fmicb.2019.00111 

Bhatnagar S Majumder PP Salunke DM  February 2019  A Pregnancy Cohort to Study Multidimensional Correlates of Preterm Birth in India Study Design Implementation and Baseline Characteristics of the Participants  American Journal of Epidemiology  10.1093/aje/kwy284 

Das R; Dhiman A; Kapil A; Bansal V; Sharma TK  January 2019  Aptamer-mediated colorimetric and electrochemical detection of Pseudomonas aeruginosa utilizing peroxidase-mimic activity of gold NanoZyme  Analytical and Bioanalytical Chemistry  10.1007/s00216-018-1555-z 

Weill F; Domman D; Njamkepo E; Almesbahi AA; Naji M; Nasher SS; Rakesh A; Assiri AM; Sharma NC; Kariuki S; Pourshafie MR; Rauzier J; Abubakar A; Carter JY; Wamala JF; Seguin C; Bouchier C; Malliavin T; Bakhshi B; Abulmaali HHN; Kumar D; Njoroge SM; Malik MR; Kiiru J; Luquero FJ; Azman AS; Ramamurthy T; Thomson NR; Quilici ML  January 2019  Genomic insights into the 2016-2017 cholera epidemic in Yemen  Nature  10.1038/s41586-018-0818-3 

Awasthi SP; Chowdhury N; Neogi SB; Hinenoya A; Hatanaka N; Chowdhury G; Ramamurthy T; Yamasaki S  December 2018  Development of a multiplex PCR assay for the detection of major virulence genes in Vibrio cholerae including non-O1 and non-O139 serogroups  Microbiol Methods  10.1016/j.mimet.2018.12.012 

Kar M; Nisheetha A; Kumar A; Jagtap S; Shinde J; Singla M; M S; Pandit A; Chandele A; Kabra SK; Krishna S; Roy R; Lodha R; Pattabiraman C; Medigeshi GR  December 2018  Isolation and molecular characterization of Dengue virus clinical isolates from pediatric patients in New Delhi  Isolation and molecular characterization of dengue virus clinical isolates from pediatric patients in New Delhi  10.1016/j.ijid.2018.12.003 

Adela R; Reddy PNC; Ghosh TS; Aggarwal S; Yadav AK; Das B; Banerjee SK  January 2019  Serum Protein Signature of Coronary Artery Disease in Type 2 Diabetes Mellitus  Journal of Translational Medicine  10.1186/s12967-018-1755-5 

Giri S; Nair NP; Mathew A; Manohar B; Simon A; Singh T; Suresh Kumar S; Mathew MA; Babji S; Arora R; Girish Kumar CP; Venkatasubramanian S; Mehendale S; Gupte MD; Kang G  January 2019  Rotavirus gastroenteritis in Indian children 5 years hospitalized for diarrhoea 2012 to 2016  BMC Public Health   10.1186/s12889-019-6406-0 

Bagul P; Katare P; Bugga P; Dinda AK; Banerjee SK  November 2018  SIRT-3 Modulation by Resveratrol Improves Mitochondrial Oxidative Phosphorylation in Diabetic Heart through Deacetylation of TFAM  Cells  10.3390/cells7120235 

Anang S; Kaushik N; Hingane S; Kumari A; Gupta J; Asthana S; Shalimar; Nayak B; Ranjith-Kumar CT; Surjit M  October 2018  Potent Inhibition of Hepatitis E Virus Release by a Cyclic Peptide Inhibitor of the Interaction between Viral Open Reading Frame 3 Protein and Host Tumor Susceptibility Gene 101  Journal of Virology  10.1128/JVI.00684-18 

Srivastava M; Suri C; Singh M; Mathur R; Asthana S  September 2018  Molecular dynamics simulation reveals the possible druggable hot-spots of USP7  Oncotarget  10.18632/oncotarget.26136 

Chowdhury G; Stine OC; Rajendran K; Mukhopadhyay AK; Okamoto K; Ramamurthy T  October 2018  Detection of Uncommon Enteric Bacterial Pathogens from Acute Diarrheal Specimens using SYBR-Green Real Time PCR  Jpn J Infect Disease  10.7883/yoken.JJID.2018.142

Arora G; Chaudhary D; Kidwai S; Sharma D; Singh R  November 2018  CitE Enzymes Are Essential for Mycobacterium tuberculosis to Establish Infection in Macrophages and Guinea Pigs  Frontiers in Cellular and Infection Microbiology  10.3389/fcimb.2018.00385 

Thakur P; Choudhary E; Pareek M; Agarwal N  November 2018  Regulation and overexpression studies of YidC in Mycobacterium tuberculosis  Scientific Reports  10.1038/s41598-018-35475-4 

Deep A; Tiwari P; Agarwal S; Kaundal S; Kidwai S; Singh R; Thakur KG  October 2018  Structural functional and biological insights into the role of Mycobacterium tuberculosis VapBC11 toxinantitoxin system targeting a tRNase to tackle mycobacterial adaptation  Nucleic Acids Research  10.1093/nar/gky924 

Anand R; Sarmah D T; Chatterjee S  July 2018  Extracting proteins involved in disease progression using temporally connected networks  BMC Systems Biology  10.1186/s12918-018-0600-z 

Das S; Bansal M; Bhattacharya J  August 2018  Characterization of the membrane-bound form of the chimeric B/C recombinant HIV-1 Env LT5.J4b12C  Journal of General Virology  10.1099/jgv.0.001141 

Gupta I;Varshney NK; Khan S   August 2018  Emergence of Members of TRAF and DUB of Ubiquitin Proteasome System in the Regulation of Hypertrophic Cardiomyopathy  Frontiers in Genetics   10.3389/fgene.2018.00336 

Das B; Ghosh T S; Kedia S; Rampal R; Saxena S; Bag S; Mitra R; Dayal M; Mehta O; Surendranath A Travis S P L ; Tripathi P; Nair G B; Ahuja V  July 2018  Analysis of the Gut Microbiome of Rural and Urban Healthy Indians Living in Sea Level and High Altitude Areas  Scientific Reports  10.1038/s41598-018-28550-3 

Rana A; Kumar V; Tiwari L; Thakur A; Meena CL; Mahajan D  June 2018  Triflic Anhydride Promoted Synthesis of Primary Amides and their Conversion into Nitriles  Synopen  10.1055/s-0037-1610154 

Kumar V; Rana A; Meena CL; Sharma N; Kumar Y; Mahajan D  August 2018  Electrophilic Activation of Carboxylic Anhydrides for Nucleophilic Acylation Reactions  Synthesis  10.1055/s-0037-1609564 

Tiwari L; Kumar V; Kumar B; Mahajan D  June 2018  A practically simple catalyst free and scalable synthesis of N-substituted ureas in water  RSC Advances  10.1039/C8RA03761B 

Bhatia D; Sinha A; Hari P; Sopory S; Saini S; Puraswani M; Saini H; Mitra DK; Bagga A  JULY 2018  Rituximab modulates T- and B-lymphocyte subsets and urinary CD80 excretion in patients with steroid-dependent nephrotic syndrome  Pediatric Research  10.1038/s41390-018-0088-7 

Bag S; Ghosh TS; Banerjee S; Mehta O; Verma J; Dayal M; Desigamani A; Kumar P; Saha B; Kedia S; Ahuja V; Ramamurthy T; Das B  July 2018  Molecular Insights into Antimicrobial Resistance Traits of Commensal Human Gut Microbiota  Microbial Ecology  10.1007/s00248-018-1228-7 

Samal S; Das S; Boliar S; Qureshi H; Shrivastava T; Kumar N; Goswami S; Bansal M; Chakrabarti B  July 2018  Cell surface ectodomain integrity of a subset of functional HIV-1 envelopes is dependent on a conserved hydrophilic domain containing region in their C-terminal tail  Retrovirology 2018  10.1186/s12977-018-0431-4 

Guruprasad R Medigeshi; Katja Fink; Nagendra R Hegde  July 2018  Position Paper on Road Map for RNA Virus Research in India  Frontiers in Microbiology  10.3389/fmicb.2018.01753 

Lekshmi N; Joseph I; Ramamurthy T; Thomas S  May 2018  Changing facades of Vibrio cholerae An enigma in the epidemiology of cholera  Indian Journal of Medical Research  10.4103/ijmr.IJMR28017 

Tripathi N; Singh P; Luxami V; Mahajan D; Kumar S  May 2018  Spermine detection from urine and blood serum using ionic self-assembly of benzimidazolium based dipod and dodecylsulfate  Sensors and Actuators B Chemical  10.1016/j.snb.2018.05.050 

Gupta I; Aggarwal S; Singh K; Yadav A; Khan S  May 2018  Ubiquitin Proteasome pathway proteins as potential drug targets in parasite Trypanosoma cruzi  Scientific Reports  10.1038/s41598-018-26532-z 

Mattapally S; Singh M; Murthy KS; Asthana S; Banerjee SK  February 2018  Computational modeling suggests impaired interactions between NKX2.5 and GATA4 in individuals carrying a novel pathogenic D16N NKX2.5 mutation  Oncotarget  10.18632/oncotarget.24459 

Kuila B; Kumar K; Mahajan D; Singh P; Bhargava G  November 2017  Acetylenic Ester Promoted Tandem Ring Opening of Dienyl Thiazolidin-4-ones and Cyclizations A Facile and Chemoselective Synthesis of Functionalized Pyridine-2-carboxylates  Thieme  10.1055/s-0036-1591721 

Singh N; Goel R; Jain E  February 2018  Differential Metabolic Pathway Analysis of the Proteomes of Leishmania donovani and Leptomonas seymouri  Proteomics Clinical Application  10.1002/prca.201600087 

Gupta I; Singh K; Varshney NK; Khan S  February 2018  Delineating Crosstalk Mechanisms of the Ubiquitin Proteasome System that Regulate Apoptosis  Frontiers in Cell and Developmental Biology 2018   10.3389/fcell.2018.00011 

Chandru S; Nair V; Anang S; Mandal SD; Pareek M; Kaushik N; Srivastava A; Saha S Shalimar; Nayak B; Ranjith-Kumar CT; Surjit M  January 2018  Host-virus protein interaction network reveals the involvement of multiple host processes in the life cycle of hepatitis E virus  mSystems  10.1128/mSystems.00135-17 

Rinki Kumari; Nirpendra Singh; Malik Z. Abdin; Arvind H. Patel; Guruprasad R. Medigeshi  January 2018  Dengue Virus Capsid Interacts with DDX3XA Potential Mechanism for Suppression of Antiviral Functions in Dengue Infection  Front. Cell. Infect. Microbiol  10.3389/fcimb.2017.00542 

Shweta Duggal; Noor Jailkhani; Mukul Kumar Midha; Kanury VS Rao; Ajay Kumar  January 2018  Rb interactome data and its modulations during cell cycle progression in HEK 293 cells  Data in Brief  DIB-D-17-00939R1 

Shweta Duggal Noor Jailkhani Mukul Kumar Midha Namita Agrawal Kanury VS Rao Ajay Kumar  January 2018  Defining the Akt1 interactome and its role in regulating the cell cycle  Scientific Reports  10.1038/s41598-018-19689-0 

Singh P; Arora A; Strand TA; Sommerfelt H; Lodha R; Kabra SK; Aneja S; Natchu UCM; Chandra J; Rath B; Kumar Sharma V; Kumari M; Saini S; Bhatnagar S; Wadhwa N.  December 2017  Predictors of death in infants with probable serious bacterial infection  Pediatr Res  10.1038/pr.2017.299 

Kumar P Bag S Ghosh TS Dey P Dayal M Saha B Verma J Pant A Saxena S Desigamani A Rana P Kumar D Sharma NC Hanpude P Maiti TK Mukhopadhyay AK Bhadra RK Nair GB Ramamurthy T Das B.  October 2017  Molecular Insights into Antimicrobial Resistance Traits of Multidrug Resistant Enteric Pathogens isolated from India  Scientific Reports  10.1038/s41598-017-14791-1 

Weill FX Domman D Njamkepo E Tarr C Rauzier J Fawal N Keddy KH Salje H Moore S Mukhopadhyay AK Bercion R Luquero FJ Ngandjio A Dosso M Monakhova E Garin B Bouchier C Pazzani C Mutreja A Grunow R Sidikou F Bonte L Breurec S Damian M Njanpop-Lafourcade BM Sapriel G Page AL Hamze M Henkens M Chowdhury G Mengel M Koeck JL Fournier JM Dougan G Grimont PAD Parkhill J Holt KE Piarroux R Ramamurthy T Quilici ML Thomson NR.  November 2017  Genomic history of the seventh pandemic of cholera in Africa  Science  10.1126/science.aad5901 

Banerjee SK Seth S.   November 2017  An update on mid-term international society of heart research Indian section meeting Cardiovascular research convergence 2017  J Pract Cardiovasc Sc  10.4103/jpcs.jpcs4417 

Pandey AD Goswami S Shukla S Das S Ghosal S Pal M Bandyopadhyay B Ramachandran V Basu N Sood V Pandey P Chakrabarti J Vrati S Banerjee A.  October 2017  Correlation of altered expression of a long non-coding RNA NEAT1 in peripheral blood mononuclear cells with dengue disease progression  Journal of Infection  10.1016/j.jinf.2017.09.016 

Bhavya Khullar Renu Balyan Neelam Oswal Nidhi Jain Amita Sharma Malik Z. Abdin Arvind Bagga Shinjini Bhatnagar Nitya Wadhwa Uma Chandra Mouli Natchu Anna George Satyajit Rath Vineeta Bal Shailaja Sopory  October 2017  Interaction of CD80 with Neph1 A potential mechanism of podocyte injury  Clinical and Experimental Nephrology  10.1007/s10157-017-1489-3 

Kaushik N; Subramani C; Anang S; Muthumohan R; Shalimar Nayak B  October 2017  Zinc Salts Block Hepatitis E Virus Replication by Inhibiting the Activity of Viral RNA-Dependent RNA Polymerase  Journal of Virology  10.1128/JVI.00754-17 

Saqib Kidwai Chan-Yong Park Shradha Mawatwal Prabhakar Tiwari Myung Geun Jung Tannu Priya Gosaina Pradeep Kumar David Allande Sandeep Kumar Avinash Bajaj Yun-Kyung Hwang Chang Sik Song Rohan Dhiman Ill Young Lee Ramandeep Singh   September 2017  Dual Mechanism of Action of 5-Nitro-110-Phenanthroline against Mycobacterium tuberculosis  FEBS Journal  10.1128/AAC.00969-17  

Deep A Kaundal S Agarwal S Singh R and Thakur KG  October 2017  Crystal structure of Mycobacterium tuberculosis VapC20 toxin and its interaction with cognate antitoxin VapB20 suggests a model for toxin-antitoxin assembly  FEBS Journal  10.1111/febs.14289 

Irene Bosch, Helena de Puig, Megan Hiley, Marc Carré-Camps, Federico Perdomo-Celis, Carlos F. Narváez, Doris M. Salgado, Dewahar Senthoor, Madeline O’Grady, Elizabeth Phillips, Ann Durbin, Diana Fandos, Hikaru Miyazaki, Chun-Wan Yen, Margarita Gélvez-Ramírez, Rajas V. Warke, Lucas S. Ribeiro, Mauro M. Teixeira, Roque P. Almeida, José E. Muñóz-Medina, Juan E. Ludert, Mauricio L. Nogueira, Tatiana E. Colombo, Ana C. B. Terzian, Patricia T. Bozza, Andrea S. Calheiros, Yasmine R. Vieira, Giselle Barbosa-Lima, Alexandre Vizzoni, José Cerbino-Neto, Fernando A. Bozza, Thiago M. L. Souza, Monique R. O. Trugilho, Ana M. B. de Filippis, Patricia C. de Sequeira, Ernesto T. A. Marques, Tereza Magalhaes, Francisco J. Díaz, Berta N. Restrepo, Katerine Marín, Salim Mattar, Daniel Olson, Edwin J. Asturias, Mark Lucera, Mohit Singla, Guruprasad R. Medigeshi, Norma de Bosch, Justina Tam, Jose Gómez-Márquez, Charles Clavet, Luis Villar, Kimberly Hamad-Schifferli, Lee Gehrke  September, 2017  Rapid antigen tests for dengue virus serotypes and Zika virus in patient serum  Science Translational Medicine  10.1126/scitranslmed.aan1589 

Sakshi Malik, Srikanth Sadhu, Srikanth Elesela, Ramendra Pati Pandey, Amanpreet Singh Chawla, Deepak Sharma, Lipsa Panda, Deepak Rathore, Balram Ghosh, Vineet Ahuja & Amit Awasthi  July, 2017  Transcription factor Foxo1 is essential for IL-9 induction in T helper cells  Nature Communications  10.1038/s41467-017-00674-6 

Bhabatosh Das; Susmita Chaudhuri; Rahul Srivastava; G Balakrish Nair;Thandavarayan Ramamurthy  September, 2017  Fostering research into antimicrobial resistance in India  BMJ  10.1136/bmj.j3535 

Bag S., Ghosh T., Das B.  September, 2017  Draft Genome Sequence of Prevotella copri isolated from the gut of healthy adult Indian  Genome Announcement  10.1128/genomeA.00834-17 

Saqib Kidwai; Chan-Yong Park; Shradha Mawatwal; Prabhakar Tiwari; Myung Geun Jung; Tannu Priya Gosain; Pradeep Kumar; David Alland; Sandeep Kumar; Avinash Bajaj; Yun-Kyung Hwang; Chang Sik Song; Rohan Dhiman; Ill Young Lee; Ramandeep Singh  September 2017  The dual mechanism of action of 5-Nitro-110-Phenanthroline against Mycobacterium tuberculosis  Antimicrobial Agents and Chemotherapy  10.1128/AAC.00969-17  

Shradha Mawatwal; Assirbad Behura; Abhirupa Ghosh; Saqib Kidwai; Abtar Mishra; Amar Deep; Sakshi Agarwal; Sudipto Saha; Ramandeep Singh; Rohan Dhiman  September, 2017  Calcimycin mediates mycobacterial killing by inducing intracellular calcium-regulated autophagy in a P2RX7 dependent manner  Biochimica et Biophysica Acta (BBA) - General Subjects  10.1016/j.bbagen.2017.09.010 

Banerjee A, Shukla S, Pandey AD, Goswami S, Bandyopadhyay B, Ramachandran V, Das S, Malhotra A, Agarwal A, Adhikari S, Rahman M, Chatterjee S, Bhattacharya N, Basu N, Pandey P, Sood V, Vrati S  July, 2017  RNA-Seq analysis of peripheral blood mononuclear cells reveals unique transcriptional signatures associated with disease progression in dengue patients  Translational Research  10.1016/j.trsl.2017.06.007 

Kumar R, Ozorowski G, Kumar V, Holden LG, Shrivastava T, Patil S, Deshpande S, Ward AB, Bhattacharya J  July, 2017  Characterization of a stable HIV-1 B/C recombinant, soluble and trimeric envelope glycoprotein (Env) highly resistant to CD4-induced conformational changes  J Biol Chem  10.1074/jbc.M117.803056 

Das S, Boliar S, Samal S, Ahmed S, Shrivastava T, Shukla BN, Goswami S, Bansal M, Chakrabarti BK.  July, 2017  Identification and characterization of a naturally occurring, efficiently cleaved, membrane-bound, clade A HIV-1 ENV, suitable for immunogen design, with properties comparable to membrane-bound BG505  Virology  10.1016/j.virol.2017.07.001 

Das, P., Kumar, A., Bairagi, N., and Chatterjee, S.  July, 2017  Restoring calcium homeostasis in diabetic cardiomyocytes: An investigation through mathematical modeling  Biosystems  10.1039/C7MB00264E 

Kant S, Asthana S, Missiakas D, Pancholi V.  July, 2017  A novel STK1-targeted small-molecule as an "antibiotic resistance breaker" against multidrug-resistant Staphylococcus aureus  Scientific Reports  10.1038/s41598-017-05314-z 

Parul Mehrotra; Kanury V.S. Rao; Samrat Chatterjee  May, 2017  A mathematical model predicting host mitochondrial pyruvate transporter activity to be critical regulator ofMycobacterium tuberculosis pathogenicity  Biosystems  10.1016/j.biosystems.2017.02.003 

Anand, R.; Chatterjee, S.  May, 2017  Extracting genes involved in disease from a connected network of perturbed biological processes  Journal of Computational Biology  PreMedline Identifier: 28294634 

Anand, R.; Chatterjee, S.  April, 2017  Tracking disease progression by searching paths in a temporal network of biological processes  Plos One  10.1371/journal.pone.0176172 

Phonindra Nath Das; Parul Mehrotra; Aseem Mishra; Nandadulal Bairagi; Samrat chatterjee   April, 2017  Calcium dynamics in cardiac excitatory and non-excitatory cells and the role of gap junction  Mathematical Biosciences  10.1016/j.mbs.2017.04.007 

Nair VP, Anang S, Srivastava A, Surjit M.  May, 2017  RNA-dependent RNA Polymerase Assay for Hepatitis E Virus  Bio-protocol  doi.org/10.21769/BioProtoc.2199 

Nair VP and Surjit M.  May, 2017  RNA Strand Displacement Assay for Hepatitis E Virus Helicase   Bio-protocol  doi.org/10.21769/BioProtoc.2198 

Mona K Chaturvedi; Jitender Sodhi; Sean Patrick Fitzwater; Jagdish Chandra; Bimbadhar Rath; Udaypal S Kainth; Savita Saini; Robert E Black; Mathuram Santosham; Shinjini Bhatnagar  May, 2017  Efficacy of oral zinc supplementation in radiologically proven pneumonia: Secondary analysis of a Randomized controlled trial  Bulletin of WHO  10.1093/tropej/fmx036 

Das S, Boliar S, Mitra N, Samal S, Bansal M, Koff WC, Chakrabarti BK, Membrane bound modified form of clade B Env, JRCSF is suitable for immunogen design as it is efficiently cleaved and displays all the broadly neutralizing epitopes including V2 and C2 domain-dependent conformational epitopes. Retrovirology. 2016 Nov 21;13(1):81.

Tarun Kumar Sharma; John G. Bruno; William C. Cho  2016  The Point behind Translation of Aptamers for Point of Care Diagnostics  Aptamers and Synthetic Antibodies: Smithandfranklin.com  NA 

S Aggarwal; AK Yadav  2016  Dissecting the iTRAQ Data Analysis.Statistical Analysis in Proteomics  Methods in Molecular Biology  10.1007/978-1-4939-3106-4_18 

Meenakshi Kar; Mohit Singla; Anmol Chandele; Sushil K. Kabra; Rakesh Lodha; Guruprasad R. Medigeshi  March, 2017  Dengue Virus Entry and Replication Does Not Lead to Productive Infection in Platelets  Open Forum Infectious Diseases Journal  10.1093/ofid/ofx051 

Dhiman A.; Kalra P.; Bruno J.G.; Sharma, T. K  March, 2017  Aptamer based point-of- care diagnostic platforms  Sensors and Actuators B 246 (2017) 535?553 IF-4.75  10.1016/j.snb.2017.02.060 

Sharma, T. K.; Bruno J.G.; Dhiman, A  March, 2017  ABC of DNA aptamers and related assay developments  Biotechnology Advances  10.1016/j.biotechadv.2017.01.003 

Amit Kumar Yadav  March, 2017  Commentary: Deep Phosphoproteomic Measurements Pinpointing Drug Induced Protective Mechanisms in Neuronal Cells  Frontiers in Physiology  10.3389/fphys.2017.00174 

Katarzyna Karwacz, Emily R Miraldi, Maria Pokrovskii, Asaf Madi, Nir Yosef, Ivo Wortman, Xi Chen, Aaron Watters, Nicholas Carriero, Amit Awasthi, Aviv Regev, Richard Bonneau, Dan Littman, Vijay K Kuchroo  Feb, 2017  Critical role of IRF1 and BATF in forming chromatin landscape during type 1 regulatory cell differentiation  Nature Immunology  10.1038/ni.3683 

Shweta Duggal, Noor Jailkhani, Mukul Kumar Midha, Kanury V.S. Rao, Ajay Kumar  Feb, 2017  Defining the Akt1 interactome data and delineating alterations in its composition as a function of cell cycle progression  Data in Brief  10.1016/j.dib.2017.02.018 

Abhijeet Dhiman; Priya Kalra; Vipul Bansal; John. G. Brunod; Tarun Kumar Sharma  Feb, 2017  Aptamer-based point-of-care diagnostic platforms  Sensors and Actuators B: Chemical  10.1016/j.snb.2017.02.060 

Daisuke Imamura , Masatomo Morita , Tsuyoshi Sekizuka, Tamaki Mizuno, Taichiro Takemura, Tetsu Yamashiro, Goutam Chowdhury, Gururaja P. Pazhani, Asish K. Mukhopadhyay, Thandavarayan Ramamurthy, Shin-ichi Miyoshi, Makoto Kuroda, Sumio Shinoda, Makoto Ohn  Feb, 2017  Comparative genome analysis of VSP-II and SNPs reveals heterogenic variation in contemporary strains of Vibrio cholerae O1 isolated from cholera patients in Kolkata, India  PLoS Neglected Tropical Diseases  10.1371/journal.pntd.0005386 

Nidhi Jain, Neelam Oswal , Amanpreet Singh Chawla, Tanvi Agrawal, Moanaro Biswas, Sudhanshu Vrati, Satyajit Rath, Anna George, Vineeta Bal, Guruprasad, R. Medigeshi  Feb, 2017  CD8 T cells protect adult naive mice from JEV-induced morbidity via lytic function  PLoS Neglected Tropical Diseases  10.1371/journal.pntd.0005329 

Amrita Ojha; Dipika Nandi; Harish Batra; Rashi Singhal; Gowtham K. Annarapu; Sankar Bhattacharyya; Tulika Seth; Lalit Dar; Guruprasad R. Medigeshi; Sudhanshu Vrati; Naval K. Vikram; Prasenjit Guchhait  Jan, 2017  Platelet activation determines the severity of thrombocytopenia in dengue infection  Scientific Reports  10.1038/srep41697  

Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, Agnello M, Agostinis P, Aguilar PV, Aguirre-Ghiso J, Airoldi EM, Ait-Si-Ali S, Akemat  Jan, 2017  Guidelines for the use and interpretation of assays for monitoring autophagy  Autophagy  10.1080/15548627.2015.1100356 

Kumar P; Medigeshi GR; Mishra VS; Islam M; Randev S; Mukherjee A; Chaudhry R; Kapil A; Ram Jat K; Lodha R; Kabra SK  Jan, 2017  Etiology of acute respiratory infections in infants: A prospective birth cohort study  Pediatric Infectious Disease Journal  10.1097/INF.0000000000001359 

Anthwal D; Gupta RK; Bhatnagar S; Tyagi JS; Haldar S; Bhalla M  March, 2017  Direct detection of Rifampicin and Isoniazid resistance in sputum samples from tuberculosis patients by High Resolution Melt curve analysis  Journal of Clinical Microbiology  10.1128/JCM.02104-16 

Minu Nain; Sriparna Mukherjee; Sonali Karmakar; JC Paton; AC Paton; MZ Abdin; Anirban Basu; Manjula Kalia; Sudhanshu Vrati  Jan, 2017  GRP78 is an important host factor for Japanese encephalitis virus entry and replication in mammalian cells  Journal of Virology  10.1128/JVI.02274-16 

Gu G; Huang Y; Wu C; Guo Z; Awasthi A; He X  Jan, 2017  Differential expression of long noncoding RNAs during cardiac allograft rejection  Transplantation  10.1097/TP.0000000000001463 

Gupta SS; Bharati K; Sur D; Khera A; Ganguly NK; Nair GB  May, 2016  Why is the oral cholera vaccine not considered an option for prevention of cholera in India? Analysis of possible reasons.  Indian J Med Res  10.4103/0971-5916.187102 

Adewale AK; Pazhani GP; Abiodun IB; Afolabi O; Kolawole OD; Mukhopadhyay AK; Ramamurthy T  August, 2016  Unique clones of Vibrio cholerae O1 El Tor with Haitian type ctxB allele implicated in the recent cholera epidemics from Nigeria, Africa  PLoS One  10.1371/journal.pone.0159794 

Jain N; Khullar B; Oswal N; Banoth B; Joshi P; Ravindran B; Panda S; Basak S; George A; Rath S; Bal V; Sopory S.  June, 2016  TLR-mediated albuminuria needs TNF_-mediated cooperativity between TLRs present in hematopoietic tissues and CD80 present on non-hematopoietic tissues in mice  Disease Model and Mechanisms  10.1242/dmm.023440. 

Preeti Thakur; Nagavara Prasad; Gantasala; Eira Choudhary; Nirpendra Singh; Malik Zainul Abdin; Nisheeth Agarwal  May, 2016  The preprotein translocase YidC controls respiratory metabolism in Mycobacterium tuberculosis  Scientific Reports  10.1038/srep24998  

Rosemarie Mason; Hugh Welles; Cameron Adams; Bimal K Chakrabarti; Jason Gorman; Tongqing Zhou; Richard Nguyen; Sijy O?Dell; Sabrina Lusvarghi; Carole Bewley; Peter Kwong; John Mascola; Mario Roederer  April, 2016  Targeted isolation of antibodies directed against major sites of SIV Env vulnerability  PLOS Pathogens  10.1371/journal.ppat.1005537 

Eira Choudhary; Ajitesh Lunge; Nisheeth Agarwal  May, 2016  Strategies of gene inactivation in mycobacteria: achievements and challenges.  Tuberculosis  10.1016/j.tube.2016.03.005  

Reddy BR; Maitra S; Jhelum P; Kumar KP; Bagul PK; Kaur G; Banerjee SK; Kumar A; Chakravarty S  Sep, 2016  Sirtuin 1 and 7 mediate resveratrol-induced recovery from hyper-anxiety in high-fructose-fed prediabetic rats.  Journal of Biosciences  10.1007/s12038-016-9627-8  

Chowdhury G; Bhadra RK; Bag S; Pazhani GP; Das B; Basu P; Nagamani K; Nandy RK; Mukhopadhyay AK; Ramamurthy T  Oct, 2016  Rugose atypical Vibrio cholerae O1 El Tor responsible for 2009 cholera outbreak in India  Journal of Medical Microbiology  10.1099/jmm.0.000344  

Dr. Sameena Khan  April, 2016  Recent advances in the biology and drug targeting of malaria parasite aminoacyl-tRNA synthetases.  Malaria Journal  10.1186/s12936-016-1247-0 

Kanwal A; Kasetti S; Putcha UK; Asthana S; Banerjee SK  Sep, 2016  Protein kinase C-mediated sodium glucose transporter 1 activation in precondition-induced cardioprotection.  Drug Design, Development and Therapy  10.2147/DDDT.S105482 

Raikamal Ghosh; Naresh C. Sharma; Kalpataru Halder; Rupak K. Bhadra; Goutam Chowdhury; Gururaja P. Pazhani; Sumio Shinoda; Asish K. Mukhopadhyay; G. Balakrish Nair; Thadavarayan Ramamurthy  August, 2016  Phenotypic and genetic heterogeneity in Vibrio cholerae O139 isolated from cholera cases in Delhi, India during 2001-2006  Front Microbiol  10.3389/fmicb.2016.01250 

Guruprasad R. Medigeshi; Rinki Kumar; Ekta Dhamija; Tanvi Agrawal; Meenakshi Kar  Oct, 2016  N-Desmethylclozapine, Fluoxetine and Salmeterol inhibit post-entry stages of dengue virus life-cycle  Antimicrobial Agents and Chemotherapy  10.1128/AAC.01367-16 

Das B; Pazhani GP; Sarkar A; Mukhopadhyay AK; Nair GB; Ramamurthy T  Oct, 2016  Molecular Evolution and Functional Divergence of Vibrio cholera  Current Opinion on Infectious Diseases  10.1097/QCO.0000000000000306 

Rosemarie Mason; Hugh Welles; Cameron Adams; Bimal K Chakrabarti; Jason Gorman; Tongqing Zhou; Richard Nguyen; Sijy O?Dell; Sabrina Lusvarghi; Carole Bewley; Peter Kwong; John Mascola; Mario Roederer  Nov, 2016  Membrane bound modified form of clade B Env, JRCSF is suitable for immunogen design as it is efficiently cleaved and displays all the broadly neutralizing epitopes including V2 and C2 domain-dependent conformational epitopes.  Retrovirology  10.1186/s12977-016-0312-7 

Adela R; Borkar RM; Bhandi MM; Vishwakarma G; Srinivas R; Banerjee SK  Nov, 2016  Lower vitamin D metabolites levels were associated with increased coronary artery diseases in Indian type 2 diabetes patients.  Scientific Reports  10.1038/srep37593 

Kanwal A; Nizami HL; Mallapudi S; Putcha UK; Mohan GK; Banerjee SK  April, 2016  Inhibition of SGLT1 abrogates preconditioning-induced cardioprotection against ischemia-reperfusion injury  Biochemical and Biophysical Research Communications  10.1016/j.bbrc.2016.02.016 

Saumya Anang; Chandru Subramani; Vidya P. Nair; Sheetal Kaul; Nidhi Kaushik; Chandresh Sharma; Ashutosh Tiwari; CT Ranjith-Kumar; Milan Surjit  April, 2016  Identification of critical residues in Hepatitis E virus macro domain involved in its interaction with viral methyltransferase and ORF3 proteins  Scientific Reports  10.1038/srep25133 

Rinki Kumar; Tanvi Agrawal; Naseem Ahmed Khan; Yuji Nakayama; Guruprasad R. Medigeshi  July, 2016  Identification and characterization of the role of c-terminal Src kinase in dengue virus replication  Scientific Reports  10.1038/srep30490 

Despande S; Patil S; Kumar R; Hermanus T; Murugavel K.G; Solomon S; Morris L; Bhattacharya J  August, 2016  HIV-1 clade C escapes broadly neutralizing autologous antibodies with N332 glycan specificity by distinct mechanisms.  Retrovirology  10.1186/s12977-016-0297-2 

Kaur G; R; Adela R; Putcha UK; Sweeya R; Reddy BR; Kumar PK; Chakravarty S; Banerjee SK  Oct, 2016  Garlic and Resveratrol attenuate diabetic complications, loss of _-cells, pancreatic and hepatic oxidative stress in streptozotocin-induced diabetic rats.  Front Pharmacol  10.3389/fphar.2016.00360 

Sultana R; Bagul PK; Katare PB; Anwar S; Padiya R; Banerjee SK  Nov, 2016  Garlic activates SIRT-3 to prevent cardiac oxidative stress and mitochondrial dysfunction in diabetes.  Life Sciences  10.1016/j.lfs.2016.08.030 

Rakonjac J; Das B; Derda R  Dec, 2016  Filamentous Bacteriophage in Bio/Nano/Technology, Bacterial Pathogenesis and Ecology  Front Microbiol  10.3389/fmicb.2016.02109 

Niraj Kumar; Dixat Gopal Gupta; Srikant Kumar; Priyanka Maurya; Ashutosh Tiwari; Babu Mathew; Subham Banerjee; Sagarika Haldar; Jonathan Pillai; Shinjini Bhatnagar; Susmita Chaudhuri  April, 2016  Exploring Packaged Microvesicle Proteome Composition of Chinese Hamster Ovary Secretome  Journal of Biotechnology and Bioprocess Engineering  10.4172/2155-9821.1000274 

Mamta Singh; Prabhakar Tiwari; Garima Arora; Sakshi Agarwal; Saqib Kidwai; Ramandeep Singh  June, 2016  Establishing virulence associated Polyphosphate Kinase 2 as a drug target for Mycobacterium tuberculosis  Scientific Reports  10.1038/srep26900 

Vidya P. Nair; Saumya Anang; Chandru Subramani; Abhilasha Madhvi; Karishma Bakshi; Akriti Srivastava; Shalimar; Baibaswata Nayak; Ranjith Kumar CT; Milan Surjit   April, 2016  Endoplasmic Reticulum Stress Induced Synthesis of a Novel Viral Factor Mediates Efficient Replication of Genotype-1 Hepatitis E Virus  PLOS Pathogens  10.1371/journal.ppat.1005521 

Adela R; Mohammed SA; Kanwal A; Vishwakarma G; Reddy PNC; Banerjee SK  July, 2016  Elevated levels of GDF-15 is associated with increased angiotensin II in hypertensive patients with Type 2 diabetes.  Personalized Medicine (Future Medicine)  10.2217/pme-2016-0030 

Prabhakaran DM; Chowdhury G; Pazhani GP; Ramamurthy T; Thomas S  April, 2016  Draft genome sequence of an environmental trh+ Vibrio parahaemolyticus K23 strain isolated from Kerala, India  Genome Announcements  10.1128/genomeA.00282-16 

Chihara N; Madi A; Karwacz K; Awasthi A; Kuchroo VK  April, 2016  Differentiation and characterization of Tr1 cells  Current Protocols in Immunology  10.1002/0471142735.im0327s113 

Khalili H; Malik S; Ananthakrishnan A; Garber J; Higuchi L; Joshi A; Peloquin J; Richter J; Stewart K; Curhan G; Awasthi A; Yajnik V; Chan A  Dec, 2016  Dietary Sodium and Potassium Intake, Immune Tolerance and Risk of Crohn's Disease and Ulcerative Colitis  Front Immunol.  10.3389/fimmu.2016.00554 

Ajay Kumar; Shilpa Jamwal; Mukul K Midha; Baseerat Hamza; Suruchi Aggarwal; Amit K Yadav; Kanury VS Rao  Sep, 2016  Dataset generated using hyperplexing and click chemistry to monitor temporal dynamics of newly synthesized macrophage secretome post infection by mycobacterial strains  Data in Brief 

Prabhu SB; Rathore DK; Nair D; Chaudhary A; Raza S; Kanodia P; Sopory S; George A; Rath S; Bal V; Tripathi R; Ramji S; Batra A; Aggarwal KC; Chellani HK; Arya S; Agarwal N; Mehta U; Natchu UC; Wadhwa N; Bhatnagar S.  Sep, 2016  Comparison of Human Neonatal and Adult Blood Leukocyte Subset Composition Phenotypes  PLoS One  10.1371/journal.pone.0162242 

Chandele A; Sewatanon J; Gunisetty S; Singla M; Onlamoon N; Akondy RS; Kissick HT; Nayak K; Reddy ES; Kalam H; Kumar D; Verma A; Panda H; Wang S; Angkasekwinai N; Pattanapanyasat K; Chokephaibulkit K; Medigeshi GR; Lodha R; Kabra S; Ahmed R; Murali-Krishn  Nov, 2016  Characterization of human CD8 T Cell responses in dengue virus-infected patients from India  Journal of Virology  10.1128/JVI.01424-16 

Goutam Chowdhury; Gururaja Perumal Pazhani; Anirban Sarkar; Krishnan Rajendran; Asish K. Mukhopadhyay; Mihir K. Bhattacharya; Amit Ghosh; Thandavarayan Ramamurthy  Oct, 2016  Carbapenem (NDM-1) resistance in clonally distinct cinical strains of Vibrio fluvialis isolated from diarrheal patients  Emerging Infectious Diseases  10.3201/eid2210.151612 

Meghwani H; Prabhakar P; Mohammed SA; Seth S; Hote MP; Banerjee SK; Arava S; Ray R; Maulik SK  July, 2016  Beneficial effects of aqueous extract of stem bark of Terminalia arjuna (Roxb.), An ayurvedic drug in experimental pulmonary hypertension.  Journal of Ethnopharmacology  10.1016/j.jep.2016.07.029

Deshpande S; Patil S; Kumar R; Shrivastava T; Srikrishnan AK; Murugavel KG; Koff WC; Chakrabarti BK; Bhattacharya J  June, 2016  Association of mutations in V3/C3 domain with enhanced sensitivity of HIV-1 clade C primary envelopes to autologous broadly neutralizing plasma antibodies  Retrovirology  10.1186/s12977-016-0273-x 

Perez-Gamarra S; Hattara L; Batra G; Saviranta P; Lamminmaki U  Dec, 2016  Array-in-well binding assay for multiparameter screening of phage displayed antibodies  Methods  10.1016/j.ymeth.2016.12.004 

Bag S; Saha B; Mehta O; Anbumani D; Kumar N; Dayal M; Pant A; Kumar P; Saxena S; Allin KH; Hansen T; Arumugam M; Vestergaard H; Pedersen O; Pereira V; Abraham P; Tripathi R; Wadhwa N; Bhatnagar S; Prakash VG; Radha V; Anjana RM; Mohan V; Takeda K; Kurakaw  May, 2016  An Improved Method for High Quality Metagenomics DNA Extraction from Human and Environmental Samples  Scientific Reports  10.1038/srep26775 

Borkar RM; Bhandi MM; Dubey AP; Reddy VG; Komirishetty P; Nandekar PP; Sangamwar AT; Kamal A; Banerjee SK; Srinivas R  Oct, 2016  An evaluation of the CYP2D6 and CYP3A4 inhibition potential of metoprolol metabolites and their contribution to drug?drug and drug?herb interaction by LC-ESI/MS/MS.  Biomedical Chromatography  10.1002/bmc.3721 

Anand R; Ravichandran S; Chatterjee S  Nov, 2016  A new method of finding groups of coexpressed genes and condition of coexpression  BMC Bioinformatics  10.1186/s12859-016-1356-3 

Sachiyo Yoshida; Jos? Martines; Joy E. Lawn; Stephen Wall; Joao Paulo Souza; Igor Rudan; Simon Cousens; Peter Aaby; Ishag Adam; Ramesh Kant Adhikari; Namasivayam Ambalavanan; Shams E I Arifeen; Dhana Raj Aryal; S. K. Asiruddin; Abdullah Baqui; Aluisio J D  June, 2016  Setting research priorities to improve global newborn health and prevent still births by 2025  J Glob Health  10.7189/jogh.06.010508 

Negi B; Kumar D; Kumbukgolla W; Jayaweera S; Ponnan P; Singh R; Agarwal S; Rawat DS  June, 2016  Antimethicillin resistant Staphylococcus aureus activity synergism with oxacillin and molecular docking studies of metronidazole-triazole derviatives  European Journal Of Medicinal Chemistry  10.1016/j.ejmech.2016.03.041 

Srijon Kaushik Banerjee; Manish Kumar; Reshma Alokam; Arun Kumar Sharma; Ayan Chatterjee; Ranjeet Kumar; Sanjaya Kumar Sahu; Kuladip Jana; Ramandeep Singh; Perumal Yogeeswari; Dharmarajan Sriram; Joyoti Basu; Manikuntala Kundu   May, 2016  Targeting multiple response regulators of Mycobacterium tuberculosis auguments the host immune response to infection  Scientific Reports  10.1038/srep25851 

Tyagi R; Garg N; Dalai S; Awasthi A  April, 2016  Transdermal immunization of P. falciparum surface antigen (MSP-119) via elastic liposomes confers robust immunogenicity  Human Vaccine and Immunotherapeutics  10.1080/21645515.2015.1116656 

D Kumar; AK Yadav; X Jia; J Mulvenna; D Dash  Nov, 2016  D Dash - Integrated transcriptomic-proteomic analysis using a proteogenomic workflow refines rat genome annotation  Molecular & Cellular Proteomics  10.1074/mcp.M114.047126 

Das S, Integrase interactor 1 in health and disease. Curr Protein Pept Sci. 2015;16(6):478-90.

Rampal R; Awasthi A; Ahuja V  March, 2016  Retinoic acid primed human dendritic cells promote gut-tropism, inhibit Th9 cells and induce Th1/Th17 cell differentiation  Journal of Leukocyte Biology  10.1189/jlb.3VMA1015-476R 

Minu Nain; M.Z. Abdin; Manjula Kalia; Sudhanshu Vrati  March, 2016  Japanese encephalitis virus invasion of cell: allies and alleys  Reviews in Medical Virology  10.1002/rmv.1868 

Kumar Dhirendra; Amit Kumar Yadav; Xinying Jia; Jason Mulvenna; Debasis Dash  Jan, 2016  Integrated Transcriptomic-Proteomic Analysis Using a Proteogenomic Workflow Refines Rat Genome Annotation  Mol Cell Proteomics  10.1074/mcp.M114.047126 

Tarak Nath Khatua; Amit K. Dinda; Uday K. Putchad; Sanjay K. Banerjee  March, 2016  Diallyl disulfide ameliorates isoproterenol induced cardiac hypertrophy activating mitochondrial biogenesis via eNOS-Nrf2-Tfam pathway in rats.  Biochemistry and Biophysics Reports  10.1016/j.bbrep.2015.11.008 

N. K. Ganguly  March, 2016  A vaccine Can Stop The Zika Virus  Newspaper Article   

Malik S; Muzamil Want; Awasthi A  Jan, 2016  The Emerging Roles of Gamma-Delta T Cells in Tissue Inflammation in Experimental Autoimmune Encephalomyelitis.  Front Immunol.  10.3389/fimmu.2016.00014 

Synne Jenum; S. Dhanasekaran; Rakesh Lodha; Aparna Mukherjee; Deepak Kumar Saini; Sarman Singh; Varinder Singh; Guruprasad Medigeshi; Marielle C. Haks; Tom H. M. Ottenhoff; Timothy Mark Doherty; Sushil K. Kabra; Christian Ritz; Harleen M. S. Grewal   Jan, 2016  Approaching a diagnostic point-of-care test for pediatric tuberculosis through evaluation of immune biomarkers across pediatric tuberculosis through evaluation of immune biomarkers across the clinical disease spectrum  Scientific Reports  10.1038/srep18520 

Sankhyan A; Sharma S; Dutta D; Chosdol K; Wakita T; Watashi K; Awasthi A; Acharya SK; Khanna N; Tiwari A; Sinha S  Feb, 2016  Inhibition of preS1-hepatocyte interaction by an array of recombinant human antibodies from naturally recovered individuals  Scientific Reports  10.1038/srep21240 

Goutam Chowdhury; Sangeeta Joshi; Sanjay Bhattacharya; Uma Sekar; Balaji Birajdar; Arpita Bhattacharyya; Sumio Shinoda; Thandavarayan Ramamurthy  Feb, 2016  Extraintestinal infections caused by non-toxigenic Vibrio cholerae non-O1/non-O139  Frontiers in Microbiology  10.3389/fmicb.2016.00144

Kaushik N; Rohila D; Arora U; Raut R; Lamminmaki U; Khanna N; Batra G  Feb, 2016  Casamino acids facilitate the secretion of recombinant dengue virus serotype-3 envelope domain III in Pichia pastoris  BMC Biotechnol  10.1186/s12896-016-0243-3 

Pedruzzi G; Das PN; Rao K; Chatterjee S  Jan, 2016  Understanding PGE2, LXA4 and LTB4 balance during Mycobacterium tuberculosis infection through mathematical model  Journal of Theoretical Biology  10.1016/j.jtbi.2015.10.025 

Patil S; Kumar R; Deshpande S; Samal S; Shrivastava T; Boliar S; Bansal M; Chaudhary NK; Srikrishnan AK; Murugavel KG; Solomon S; Simek M; Koff WC; Goyal R; Chakrabarti BK; Bhattacharya J  Jan, 2016  Conformational Epitope-Specific Broadly Neutralizing Plasma Antibodies Obtained from an HIV-1 Clade C Infected Elite Neutralizer Mediate Autologous Virus Escape through Novel Mutations in V1 Loop  Journal of Virology  10.1128/JVI.03090-15 

Singla, M; Kar M; Sethi T; Kabra SK; Lodha R; Chandele A; Medigeshi GR  March, 2016  Immune Response to Dengue Virus Infection in Pediatric Patients in New Delhi, India-Association of Viremia, Inflammatory Mediators and Monocytes with Disease Severity  PLoS Neglected Tropical Diseases  10.1371/journal.pntd.0004497  

Goswami S; Banerjee A; Kumari B; Bandopadhyay B; Bhattacharya N; Basu N; Vrati S; Arup Banerjee  Feb, 2016  Differential expression and significance of circulating microRNAs in cerebrospinal fluid of acute encephalitis patients infected with Japanese Encephalitis Virus  Molecular Neurobiology  10.1007/s12035-016-9764-y 

Kumari B; Jain P; Das S; Ghosal S; Hazra B; Trivedi AC; Basu A; Chakrabarti J; Vrati S; Banerjee A  Feb, 2016  Dynamic changes in global microRNAome and transcriptome reveal complex miRNA-mRNA regulated host response to Japanese Encephalitis Virus in microglial cells  Scientific Reports  10.1038/srep20263 

Pankaj K. Bagul; Sanjay K. Banerjee  May, 2015  Application of resveratrol in diabetes: rationale, strategies and challenges  Current Molecular Medicine  10.2174/1566524015666150505155702 

Pankaj K. Bagul; Nancy Deepthi; Razia Sultana; Sanjay K. Banerjee  Nov, 2015  Resveratrol ameliorates cardiac oxidative stress in diabetes through deacetylation of NFkB-p65 and histone 3  J Nutr Biochem  10.1016/j.jnutbio.2015.06.006 

Dr. Pankaj K. Bagul; Amit Dinda; Dr. Sanjay Banerjee  Dec, 2015  Effect of resveratrol on sirtuin expression and cardiac complications in diabetes  Biochemical and Biophysical Research Communications  10.1016/j.bbrc.2015.10.126 

N. K. Ganguly; Gautam Saha  Nov, 2015  G-finder Survey Report 2015: Neglected Disease Research & development: The Ebola effect  G-finder Survey Report 2015   

Amrita Ojha; Dipika Nandi; Harish Batra; Rashi Singhal; Gowtham K. Annarapu; Sankar Bhattacharyya; Tulika Seth; Lalit Dar; Guruprasad R. Medigeshi; Sudhanshu Vrati; Naval K. Vikram; Prasenjit Guchhait  Oct, 2015  Effect of LexA on chromosomal integration of CTX_ in Vibrio cholerae  J Bacteriol.  10.1128/JB.00674-15 

Anirban Sarkar; Gururaja P.Pazhani; Goutam Chowdhury; Amit Ghosh; Thandavarayan Ramamurthy  Sep, 2015  Attributes of carbapenemase encoding conjugative plasmid pNDMSAL from an extensively drug-resistant Salmonella enterica Serovar  Front Microbiol  10.3389/fmicb.2015.00969 

T. Ramamurthy; G. Balakrish Nair; Marie-Laure Quilici  Oct, 2015  Cholera surveillance, rapid diagnostics and laboratory networks  Wkly Epidemiol Rec.

Diana M Ho; SK Pallavi; Spyros Artavanis-Tsakona  July, 2015  The Notchmediated hyperplasia circuitry in Drosophila reveals a Src-JNK signaling axis  elife  10.7554/eLife.05996 

P Yadav; S Khalil; BR Mirdha; GK Makharia; S Bhatnagar  July, 2015  Molecular characterization of clinical isolates of Cyclospora cayetanensis from patients with diarrhoea in India  Indian J Med Microbiol  10.4103/0255-0857.158547 

Susmita Chaudhuri; Priyanka Maurya; Manpreet Kaur; Ashutosh Tiwari; Nicole Borth; Shinjini Bhatnagar; Niraj Kumar  July, 2015  Investigation of CHO Secretome: Potential Way to Improve Recombinant Protein Production from Bioprocess  J Bioprocess Biotech  10.4172/2155-9821.1000240 

Anshika Singhal; Gunjan Arora; Richa Virmani; Parijat Kundu; Tanya Khanna; Andaleeb Sajid; Richa Misra; Jayadev Joshi; Vikas Yadav; Sintu Samanta; Neeru Saini; Amit K. Pandey; Sandhya S. Visweswariah; Christian Hentschker; D?rte Becher; Ulf Gerth; Yogendr  Oct, 2015  Systematic Analysis of Mycobacterial Acylation Reveals First Example of Acylation-mediated Regulation of Enzyme Activity of a Bacterial Phosphatase  J Biol Chem  10.1074/jbc.M115.687269 

Ema T. Crooks; Tommy Tong; Bimal Chakrabarti; Kristin Narayan; Ivelin S. Georgiev; Sergey Menis; Xiaoxing Huang; Daniel Kulp; Keiko Osawa; Janelle Muranaka; Guillaume Stewart-Jones; Joanne Destefano; Sijy O?Dell; Celia LaBranche; James E. Robinson; David   May, 2015  Vaccine-Elicited Tier 2 HIV-1 Neutralizing Antibodies Bind to Quaternary Epitopes Involving Glycan-Deficient Patches Proximal to the CD4 Binding Site  PLOS Pathogens  10.1371/journal.ppat.1004932 

Khan L; Makhdoomi MA; Kumar S; Nair A; Andrabi R; Clark BE; Auyeung K; Bhattacharya J; Vajpayee M; Wig N; Pantophlet R; Luthra K  May, 2015  Identification of CD4-binding site dependent plasma neutralizing antibodies in an HIV-1 infected Indian individual  PLoS ONE  10.1371/journal.pone.0125575 

Pavan Kumar Kakumani; K.S. Rajgokul; Sanket Singh Ponia; Inderjeet Kaur; Srikrishna Mahanty; Guruprasad R. Medigeshi; Akhil C. Banerjea; Arun Prasad Chopra; Pawan Malhotra; Sunil K. Mukherjee; Raj K. Bhatnagar  Oct, 2015  Dengue NS3, an RNAi suppressor, modulates the human miRNA pathways through its interacting partner  Biochem J.  10.1042/BJ20150445 

Nimesh Gupta; M?lissanne de Wispelaere; Maxime Lecerf; Manjula Kalia; Tobias Scheel; Sudhanshu Vrati; Claudia Berek; Srinivas V. Kaveri; Philippe Despr?s; S?bastien Lacroix-Desmazes; Jordan D. Dimitrov   Nov, 2015  Neutralization of Japanese Encephalitis Virus by heme-induced broadly reactive human monoclonal antibody  Scientific Reports  10.1038/srep16248 

Young-Goo Kang; Chan-Yong Park; Hongsuk Shin; Ramandeep Singh; Garima Arora; Chan-mo Yu; Ill Young Lee  Sep, 2015  Synthesis and antitubercular activity of 2-nitroimidazooxazines with modification at the C-7 position as PA-824 analogs  Bioorg Med Chem Lett.  10.1016/j.bmcl.2015.06.060 

Sankar Bhattacharyya; Sudhanshu Vrati  Dec, 2015  The Malat1 long non-coding RNA is upregulated by signalling through the PERK axis of unfolded protein response during flavivirus infection  Scientific Reports  10.1038/srep17794 

Shailendra Asthana; Paolo Zucca; Attilio V. Vargiu; Enrico Sanjust; Paolo Ruggerone; Antonio Rescigno  August, 2015  Structure-Activity Relationship Study of Hydroxycoumarins and Mushroom Tyrosinase.  Journal of Agricultural Food Chemistry  10.1021/acs.jafc.5b02636

Mehta J; Asthana S; Mandal CC; Saxena S  March, 2015  A molecular analysis provides novel insights into androgen receptor signalling in breast cancer.  PLoS ONE  10.1371/journal.pone.0120622

Tyagi RK; Garg NK; Jadon R; Sahu T; Karare OP; Awasthi A; Marepally SK  August, 2015  Elastic liposome mediated transdermal immunization enhanced the immunogenicity of P. falciparum surface antigen, MSP-1  Vaccine  10.1016/j.vaccine.2015.06.054 

Biswas S; Chatterjee S; Chattopadhyay J  July, 2015  Cannibalism may control disease in predator population: Result drawn from a model based study  Mathematical methods in the Applied Sciences  10.1002/mma.3220 

Pedruzzi G; Rao K; Chatterjee S  July, 2015  Mathematical model of mycobacterium-host interaction describes physiology of persistence  Journal of Theoretical Biology  10.1016/j.jtbi.2015.03.031 

Chatterjee S; Pessani D; Venturino E.  May, 2015  Harvesting strategies for ?bianchetti? and ?blue fish? in the Ligurian Sea (North Mediterranean)  Applied Mathematics & Information Sciences An International Journal   10.18576/amis/100305 

Sharma TK; Ramanathan R; Rakwal R; Agrawal GK; Bansal V  May, 2015  Moving forward in plant food safety and security through NanoBioSensors: Adopt or adapt biomedical technologies?  Journal of Proteomics  10.1002/pmic.201400503 

Sharma C; Sankhyan A; Sharma T; Khan N; Chaudhuri S; Kumar N; Bhatnagar S; Khanna N; Tiwari A  May, 2015  A repertoire of high-affinity monoclonal antibodies specific to S. typhi: as potential candidate for improved typhoid diagnostic  Journal of Immunological Research  10.1007/s12026-015-8663-z 

Kulshreshtha P, Tiwari A, Priyanka, Joon S, Sinha S, Bhatnagar R.  Dec, 2015  Investigation of a panel of monoclonal antibodies and polyclonal sera against anthrax toxins resulted in identification of an anti-lethal factor antibody with disease-enhancing characteristics  Molecular Immunology  10.3390/toxins7061854 

Singh P; Wadhwa N ; Lodha R; Sommerfelt H; Aneja S; Natchu UCM; Kabra SK; Bhatnagar S; Strand TA.  April, 2015  Predictors of time till recovery in infants with probable serious bacterial infections  PLoS ONE  10.1371/journal.pone.0124594 

Rathore DK; Nair D; Raza S; Saini S; Singh R; Kumar A; Tripathi R; Ramji S; Batra A; Aggarwal KC; Chellani HK; Arya S; Bhatla N; Paul VK; Aggarwal R; Agarwal N; Mehta U; Sopory S; Natchu UCM; Bhatnagar S; Bal V; Rath S; Wadhwa N  April, 2015  Underweight full-term Indian neonates show differences in umbilical cord blood leukocyte phenotype  PLoS ONE  10.1371/journal.pone.0123589 

Sarkar N; Panigrahi R; Pal A; Biswas A; Singh SP; Kar S; Bandopadhyay M; Das D; Saha D; Kanda T; Sugiyama M; Chakrabarti S; Banerjee A; Chakravarty R  Oct, 2015  Expression of microRNA-155 correlates positively with the expression of Toll Like Receptor 7 and modulates Hepatitis B Virus via C/EBP-_ in Hepatocytes  Journal of Viral Hepatitis  10.1111/jvh.12390 

Singh V; Kaur C; Chaudhary VK; Rao K; Chatterjee S  August, 2015  M. tuberculosis Secretory Protein ESAT-6 Induces Metabolic Flux Perturbations to Drive Foamy Macrophage Differentiation  Scientific Reports  10.1038/srep12906 

Negi R; Dewan P; Shah D; Das S; Bhatnagar S; Gupta P  August, 2015  Oral zinc supplements are ineffective for treating acute dehydrating diarrhoea in 5-12-year-olds  Acta Paediatricia  10.1111/apa.12645

Das PN; Pedruzzi G; Bairagi N; Chatterjee S  Dec, 2015  Coupling calcium dynamics and mitochondrial bioenergetic: an in silico study to simulate cardiomyocyte dysfunction  Molecular Biosystems  10.1039/C5MB00872G 

Khandelwal D; Gupta N; Mukherjee A; Lodha R; Singh V; Grewal HM; Bhatnagar S; Singh S; Kabra SK  October 2014  Vitamin D levels in Indian children with intrathoracic tuberculosis  Indian J Med Res  NA 

Mukherjee A; Saini S; Kabra SK; Gupta N; Singh V; Singh S; Bhatnagar S; Saini D; Grewal HM; Lodha R  January 2014  Effect of micronutrient deficiency on QuantiFERON-TB Gold In-Tube test and tuberculin skin test in diagnosis of childhood intrathoracic tuberculosis  Eur J Clin Nutr.  10.1038/ejcn.2013.216 

Lodha R; Shah N; Mohari N; Mukherjee A; Vajpayee M; Singh R; Singla M; Saini S; Bhatnagar S; Kabra S.  August 2014  Immunologic effect of zinc supplementation in HIV infected children receiving highly active antiretroviral therapy A randomized double blind placebo controlled trial  J Acquir Immune Defic Syndr  10.1097/QAI.0000000000000191 

Prasad K; Sharma A; Garg A; Mohanty S; Bhatnagar S; Johri S; Singh KK; Nair V; Sarkar RS; Gorthi SP; Hassan KM; Prabhakar S; Marwaha N; Khandelwal N; Misra UK; Kalita J; Nityanand S  December 2014  Intravenous autologous bone marrow mononuclear stem cell therapy for ischemic stroke a multicentric randomized trial  Stroke  10.1161/STROKEAHA.114.007028 

Lodha R; Mukherjee A; Singh V; Singh S; Friis H; Faurholt-Jepsen D; Bhatnagar S; Saini S; Kabra SK; Grewal HM  November 2014  Effect of micronutrient supplementation on treatment outcomes in children with intrathoracic tuberculosis a randomized controlled trial  Am J Clin Nutr  10.3945/ajcn.113.082255

Singh P; Wadhwa N; Chaturvedi MK; Bhatia V; Saini S; Tandon N; Makharia GK; Maki M; Not T; Phillips A; Bhatnagar S.  June 2014  Validation of point-of-care testing for coeliac disease in children in a tertiary hospital in north India  Arch Dis Child  10.1136/archdischild-2013-305567 

Bothra M; Bhatnagar S.  February 2015  Probiotics in pediatrics  Indian J Pediatr  10.1007/s12098-015-1719-1 

Sandhya Bansal; Manish Singh; Saqib Kidwai; Priyanshu Bhargava; Ashima Singh; Vedagopuram Sreekanth; Ramandeep Singh; Avinash Bajaj  Sep, 2014  Bile acid amphiphiles with tunable head groups as highly selective anti-tubercular agents  Royal Society of Chemistry: Medicinal Chemistry Communication  10.1039/C4MD00303A 

P. Naveen Chander Reddy; Dr. Ramu Adela; Dr. Sanjay Banerjee  Jan, 2015  Alteration of plasma GDF-11 levels in type 2 diabetes patients with cardiovascular complications: A pilot study  Journal of the practice of cardiovascular sciences  10.4103/2395-5414.177246 

Yamasaki E; Yamada C; Jin X; Nair GB; Kurazono H; Yamamoto S  Feb, 2015  Expression of marA is remarkably increased from the early stage of development of fluoroquinolone-resistance in uropathogenic Escherichia coli  Journal of Infection and Chemotherapy  10.1016/j.jiac.2014.10.007 

Hajela N; Ramakrishna BS; Nair GB; Abraham P; Gopalan S; Ganguly NK  March, 2015  Gut microbiome, gut function, and probiotics: Implications for health  Indian Journal of Gastroenterology  10.1007/s12664-015-0547-6 

Tiwari P; Arora G; Singh M; Kidwai S; Narayan O; Singh R  Jan, 2015  MazF ribonucleases promote Mycobacterium tuberculosis drug tolerance and virulence in guinea pigs  Nature Communications  10.1038/ncomms 7059 

Choudhary E; Thakur P; Pareek M; Agarwal N  Feb, 2015  Gene silencing by CRISPR interference in mycobacteria  Nature Communications  10.1038/ncomms7267 

Boliar S; Das S; Bansal M; Shukla BN; Patil S; Shrivastava T; Samal S; Goswami S; King CR; Bhattacharya J; Chakrabarti BK  March, 2015  An efficiently cleaved HIV-1 clade C Env selectively binds to neutralizing antibodies  PLoS ONE  10.1371/journal.pone.0122443 

Appaiahgari MB, Vrati S.  March, 2015  Adenoviruses as gene/vaccine delivery vectors: promises and pitfalls  Expert Opinion on Biological Therapy  10.1517/14712598.2015.993374 

Sharma D; Priyadarshini P; Vrati S.  Nov, 2014  Unravelling the web of viroinformatics: computational tools and databases in viral research  Journal of Virology  10.1128/JVI.02027-14 

Kumar D; Khare G; Beena; Kidwai S; Tyagi AK; Singh R; Rawat DS  Sep, 2014  Novel isoniazid-amidoether derivatives: synthesis, characterization and antimycobacterial activity evaluation  Royal Society of Chemistry: Medicinal Chemistry Communication  10.1039/C4MD00288A

Lopez AL; Gonzales ML; Aldaba JG; Nair GB  June, 2014  Killed oral cholera vaccines: history, development and implementation challenges  Ther Adv Vaccines  10.1177/2051013614537819 

Kim EJ; Lee D; Moon SH; Lee CH; Kim SJ; Lee JH; Kim JO; Song M; Das B; Clemens J; Pape JW; Nair GB; Kim DW  Sep, 2014  Molecular insights into the evolutionary pathway of Vibrio cholerae O1 atypical El Tor variants  PLOS Pathogens  10.1371/journal.ppat.1004384 

Kanungo S; Sen B; Ramamurthy T; Sur D; Manna B; Pazhani GP; Chowdhury G; Jhunjhunwala P; Nandy RK; Koley H; Bhattacharya MK; Gupta S; Goel G; Dey B; M T; Nair GB; Ghosh A; Mahalanabis D  July, 2014  Safety and immunogenicity of a live oral recombinant cholera vaccine VA1.4: a randomized, placebo controlled trial in healthy adults in a cholera endemic area in Kolkata, India  PLoS ONE  10.1371/journal.pone.0099381 

Kanungo S; Lopez AL; Ali M; Manna B; Kim DR; Mahapatra T; Holmgren J; Dhingra MS; Weirzba TF; Nair GB; Bhattacharya SK; Clemens JD; Sur D.  May, 2014  Vibriocidal antibody responses to a bivalent killed whole-cell oral cholera vaccine in a phase III trial in Kolkata, India  PLoS ONE  10.1371/journal.pone.0096499 

Das B; Kumari R; Pant A; Sen Gupta S; Saxena S; Nair GB.  Sep, 2014  A Novel, Broad-Range, CTX_ -Derived Stable Integrative Expression Vector For Functional Studies  Journal of Bacteriology  10.1128 /JB.01966-14 

B. Das  Nov, 2014  Mechanistic insights into filamentous phage integration in Vibrio cholerae  Frontiers in Microbiology  DOI: 10.3389/fmicb.2014.00650.

Mehrotra P, Jamwal S, Saquib N Md, Sinha N, Siddiqui Z, Manivel V, Chatterjee S, Rao KVS.  July, 2014  Pathogenicity of Mycobacterium tuberculosis is expressed by regulating metabolic thresholds of the host macrophage  PLOS Pathogens  10.1371/journal. ppat.1004265. 

Sinha N; Negi S; Tikoo K; Sharma S; Tripathi P; Kumar D; Rao KVS; Chatterjee S  August, 2014  Molecular signatures for obesity and associated disorders identified through partial least square regression models  BMC Systems Biology  10.1186/s12918-014-0104-4

Bratati Mukhopadhyay; Nirmal Kumar Ganguly  Dec, 2014  The Unexplored Role of Probiotics on the Parasitic Pathogens  Food and Nutrition Sciences  10.4236/fns.2014.522230 

Nirmal K. Ganguly; Simon Croft; Lalji Singh; Subrata Sinha; Tanjore Balganesh  April, 2014  Biomedicine and biotechnology: public health impact  BioMed Research International  10.1155/2014/524785 

Pabudi Weerathunge; Rajesh Ramanathan; Ravi Shukla; Tarun Kumar Sharma; Vipul Bansal  Oct, 2014  Aptamer-controlled reversible inhibition of gold nanozyme activity for pesticide sensing  Analytical Chemistry  10.1021/ac5028726 

Tarun Kumar Sharma; Rajesh Ramanathan; Pabudi Weerathunge; Mahsa Mohammadtaheri; Hemant Kumar Daima; Ravi Shukla; Vipul Bansal  Oct, 2014  Aptamer-mediated ?turn-off/turn-on? nanozyme activity of gold nanoparticles for kanamycin detection  Chemical Communications  10.1039/C4CC07275H 

Aradhana Chopra; Ravi Shukla; Tarun Kumar Sharma  July, 2014  Aptamers as an emerging player in Biology  Smithand Franklin: Aptamers and Synthetic Antibodies  

Shilpa Patil; Ipsita Choudhary; Nakul K. Chaudhary; Rajesh Ringe; Manish Bansal; Brihaspati Narayan Shukla; Saikat Boliar; Bimal K. Chakrabarti; Jayanta Bhattacharya  July, 2014  Determinants in V2C2 region of HIV-1 clade C primary envelopes conferred altered neutralization susceptibilities to IgGb12 and PG9 monoclonal antibodies in a context-dependent manner  Virology  10.1016/j.virol.2014.06.018 

Deepak Kumar; Beena; Garima Khare; Saqib Kidwai; Anil K. Tyagi; Ramandeep Singh; Diwan S. Rawat  June, 2014  Synthesis of 1, 2, 3 triazole derivatives of isoniazid and their in vitro and in vivo anti-mycobacterial activity evaluation  European Journal Of Medicinal Chemistry  10.1016/j.ejmech.2014.05.005

Meetu Gupta; Andaleeb Sajid; Kirti Sharma; Soumitra Ghosh; Gunjan Arora; Ramandeep Singh; Valakunja Nagaraja; Vibha Tandon; Yogendra Singh   July, 2014  HupB, a nucleoid associated protein of Mycobacterium tuberculosis is modified by Serine/Threonine protein kinases in vivo  Journal of Bacteriology  10.1128/JB.01625-14 

Deepika Bhullar; Richa Jalodia; Manjula Kalia; Sudhanshu Vrati  Dec, 2014  Cytoplasmic translocation of Polypyrimidine Tract-Binding Protein and Its Binding to Viral RNA during Japanese Encephalitis Virus Infection Inhibits Virus Replication  PLoS ONE  10.1371/journal.pone.0114931  

Nita Bhandari; Temsunaro Rongsen-Chandola; Ashish Bavdekar; Jacob John; Kalpana Antony; Sunita Taneja; Nidhi Goyal; Anand Kawade; Prof Gagandeep Kang; Sudeep Singh Rathore; Sanjay Juvekar; Prof Jayaprakash Muliyil; Alok Arya; Hanif Shaikh; Vinod Abraham;   August, 2014  Efficacy of a monovalent human-bovine 116E rotavirus vaccine in Indian children in the second year of life  Vaccine  10.1016/j.vaccine.2014.04.079 

Arora G; Tiwari P; Mandal RS; Gupta A; Sharma D; Saha S; Singh R  Sep, 2014  High through put screen identifies small molecule inhibitors specific for Mycobacterium tuberculosis phosphoserine phosphatase  Journal of Biological Chemistry  10.1074/jbc.M114.597682 

Gunjan Arora; Andaleeb Sajid; Anshika Singhal; Jayadev Joshi; Richa Virmani; Meetu Gupta; Nupur Verma; Abhijit Maji; Richa Misra; Gre?gory Baronian; Amit K. Pandey; Virginie Molle; Yogendra Singh  Nov, 2014  Identification of Ser/Thr kinase and Forkhead Associated Domains in Mycobacterium ulcerans: Characterization of Novel Association between Protein Kinase Q and MupFHA  PLoS Neglected Tropical Diseases  10.1371/journal.pntd.0003315 

Satyabrata Bag; Bhabatosh Das; Shreya Dasgupta; Rupak K. Bhadra  May, 2014  Mutational analysis of the (p)pp Gpp synthetase activity of the Rel enzyme of Mycobacterium tuberculosis  Archives of Microbiology  10.1007/s00203-014-0996-9 

Tarini Shankar Ghosh; Sourav Sen Gupta; Tanudeep Bhattacharya; Deepak Yadav; Anamitra Barik; Abhijit Chowdhury; Bhabatosh Das; Sharmila S. Mande; G. Balakrish Nair   April, 2014  Gut microbiomes of Indian children of varying nutritional status  PLoS ONE  10.1371/journal.pone.0095547 

Rachana Banerjee; Bhabatosh Das; G. Balakrish Nair; Surajit Basak  April, 2014  Dynamics in genome evolution of Vibrio cholerae  Infection Genetics And Evolution  10.1016/j.meegid.2014.01.006 

Yuen-Yi Tseng; Branden S. Moriarity; Wuming Gong; Ryutaro Akiyama; Ashutosh Tiwari; Hiroko Kawakami; Peter Ronning; Brian Reuland; Kacey Guenther; Thomas C. Beadnell; Jaclyn Essig; George M. Otto; M. Gerard O?Sullivan; David A. Largaespada; Kathryn L. Sch  August, 2014  PVT1-Dependence in Cancer with MYC Copy Number Increase  Nature  10.1038/nature13311 

Xia Jiang; Tatsuo Kanda; Shuang Wu; Masato Nakamura; Tatsuo Miyamura; Shingo Nakamoto; Arup Banerjee; Osamu Yokosuka  June, 2014  Regulation of miRNA by HBV infection and their possible association with control of innate immunity  World Journal of Gastroenterology  10.3748/wjg.v20.i23.7197 

Nita Bhandari; Temsunaro Rongsen-Chandola; Ashish Bavdekar; Jacob John; Kalpana Antony; Sunita Taneja; Nidhi Goyal; Anand Kawade; Prof Gagandeep Kang; Sudeep Singh Rathore; Sanjay Juvekar; Prof Jayaprakash Muliyil; Alok Arya; Hanif Shaikh; Vinod Abraham;   June, 2014  Efficacy of a monovalent human-bovine 116E rotavirus vaccine in Indian infants: a randomised, double-blind, placebo-controlled trial  Lancet  10.1016/S0140-6736(13)62630-6 

Sharma M; Bhattacharyya S; Nain M; Kaur M; Sood V; Gupta V; Khasa R; Abdin MZ; Vrati S; Kalia M  July, 2014  Japanese Encephalitis Virus replication is negatively regulated by autophagy and occurson LC3-I and EDEM 1 containing membranes  Autophagy  10.4161/auto.29455 

Siddhika Pareek; Saugata Roy; Bharti Kumari; Pratistha Jain; Arup Banerjee; Sudhanshu Vrati  May, 2014  miR-155 induction in microglial cells suppresses Japanese Encephalitis Virus replication and negatively modulates innate immuneresponses  Journal of Neuroinflammation  10.1186/1742-2094-11-97 

Rituparna De; Jayeeta Banerjee Ghosh; Sourav Sen Gupta; Yoshifumi Takeda; G. Balakrish Nair  Oct, 2013  The role of Vibrio choleraegenotyping in Africa  Journal of Infectious Diseases  10.1093/infdis/jit199 

Nimesh Gupta; Pushpa Hegde; Maxime Lecerf; Minu Nain; Manpreet Kaur; Manjula Kalia; Sudhanshu Vrati; Jagadeesh Bayry; S?bastien Lacroix-Desmazes; Srini V. Kaveri  March, 2014  Japanese encephalitis virus expands regulatory T cells by increasing the expression of PD-L1on dendritic cells  European Journal of Immunology  10.1002/eji.201343701 

Bhabatosh Das; G Balakrish Nair; Rupak K Bhadra  Jan, 2014  Acquisition and dissemination mechanisms of CTX_ in Vibrio cholerae: New paradigm for diff residents  World Journal Of Medical Genetics  10.5496/wjmg.v4.i2.27  

TK Sharma; R. Shukla  March, 2014  Nanoscience and aptamer technology for point of care diagnostics  Symbiosis   

V Tak; BR Mirdha; P Yadav; P Vyas; GK Makharia; S Bhatnagar  Jan, 2014  Molecular characterisation of Giardia intestinalis assemblages from human isolates at a tertiary care centre of India  Indian Journal of Medical Research  10.4103/0255-0857.124290 

Sarala Malla; Shyam Prakash Dumre; Geeta Shakya; Palpasa Kansakar; Bhupraj Rai; Anowar Hossain; Gopinath Balakrish Nair; M John Albert; David Sack; Stephen Baker; Motiur Rahman  March, 2014  The challenges and successes of implementing a sustainable antimicrobial resistance surveillance programme in Nepal  BMC Public Health  10.1186/1471-2458-14-269 

Shantanu K. Kar; Binod Sah; Bikash Patnaik; Yang Hee Kim; Anna S. Kerketta; Sunheang Shin; Shyam Bandhu Rath; Mohammad Ali; Vittal Mogasale; Hemant K. Khuntia; Anuj Bhattachan; Young Ae You; Mahesh K. Puri; Anna Lena Lopez; Brian Maskery; Gopinath B. Nair  Feb, 2014  Mass vaccination with a new, less expensive oral cholera vaccine using public health infrastructure in India: the odisha model  PLoS Neglected Tropical Diseases  10.1371/journal.pntd.0002629 

Neerja Hajela; G. Balakrish Nair; B.S. Ramakrishna; N.K. Ganguly  Jan, 2014  Probiotic foods: Can their increasing use in India ameliorate the burden of chronic lifestyle disorders?  Indian Journal of Medical Research   

Eira Choudhary; William Bishai; Nisheeth Agarwal   Feb, 2014  Expression of a subset of heat stress induced genes of Mycobacterium tuberculosis is regulated by 3?,5?-cyclic AMP  PLoS ONE  10.1371/journal.pone.0089759 

Barman S, Koley H, Nag D, Shinoda S, Nair GB, Takeda Y.  Nov, 2013  Passive immunity with multi-serotype heat-killed Shigellae in neonatal mice  Microbiology and Immunology  10.1111/1348-0421.12164 

TK Sharma; R. Shukla  Dec, 2013  Nucleic acid aptamers as an emerging diagnostic tool for animal pathogens  Advances in Animal and Veterinary Science  10.14737/journal.aavs/2014.2.1.50.55  

Sankar Bhattacharyya; Utsav Sen; Sudhanshu Vrati  Oct, 2013  Regulated IRE 1-dependent decay pathway is activated during Japanese encephalitis virus-induced unfolded protein response and benefits viral replication  Journal Of General Virology  10.1099/vir.0.057265-0 

Mohan Babu Appaiahgari; Roger Glass; Shakti Singh; Sunita Taneja; Temsunaro Rongsen-Chandola; Nita Bhandari; Sukhdev Mishra; Sudhanshu Vrati  Dec, 2013  Transplacental rotavirus IgG interferes with immune response to live oral rotavirus vaccine ORV -116E in Indian infants  Vaccine  10.1016/j.vaccine.2013.12.017 

Dr. Mouli Natchu; Dr. Shinjini Bhatanagar  July, 2013  Diarrhoea in children: identifying the cause and burden  Lancet  10.1016/S0140-6736(13)60941-1 

Ramandeep Singh; Mamta Singh; Garima Arora; Santosh Kumar; Prabhakar Tiwari; Saqib Kidwai  June, 2013  Polyphosphate deficiency in mycobacterium tuberculosis is associated with enhanced drug susceptibility and impaired growth in guinea pigs  Journal of Bacteriology  10.1128/JB.00038-13 

Nitin Kumar; Ekta Kapoor; Ramandeep Singh; Saqib Kidwai; Widurana Kumbukgolla; Sunita Bhagat; Diwan S. Rawat  Sep, 2013  Synthesis and antibacterial/antitubercular activity evaluation of symmetrical trans-cyclohexane-1,4-diamine derivatives  Indian Journal of medicinal chemistry  10.1002/chin.201412062  

Tarini Shankar Ghosh; Sourav Sen Gupta; Gopinath Balakrish Nair; Sharmila S. Mande  Dec, 2013  In-silico analysis of antibiotic resistance genes in the gut microflora of individuals from diverse geographies and age-groups  PLoS ONE  10.1371/journal.pone.0083823  

Eiki Yamasaki; Ryuta Sakamoto; Takashi Matsumoto; Fumiki Morimatsu; Takayuki Kurazono; Toyoko Hiroi; G. Balakrish Nair; Hisao Kurazono  Oct, 2013  Development of an immunochromatographic test strip for detection of cholera toxin  BioMed Research International  10.1155/2013/679038 

Soumik Barman; Hemanta Koley; Thandavarayan Ramamurthy; Manoj Kumar Chakrabarti; Sumio Shinoda; Gopinath Balakrish Nair; Yoshifumi Takeda  Nov, 2013  Protective immunity by oral immunization with heat-killed Shigella strains in a guinea pig colitis model  Microbiology and Immunology  10.1111/1348-0421.12095  

Myo Thura Zaw; Eiki Yamasaki; Shingo Yamamoto; Keiko Kawamoto; Hisao Kurazono; GB Nair   June, 2013  Uropathogenic specific protein gene, highly distributed in extraintestinal uropathogenic Escherichia coli, encodes a new member of H-N-H nuclease superfamily  Gut Pathogens  10.1186/1757-4749-5-13 

Kakumani PK; Ponia SS; Rakgokul KS; Sood V; Chinnappan M; Banerjea AC; Medigeshi GR; Malhotra P; Mukherjee SK; Bhatnagar RK  June, 2013  Role of RNA Interference (RNA i) in Dengue Virus Replication and Identification of NS4B as an RNA i Suppressor  Journal of Virology  10.1128/JVI.02774-12 

Tanvi Agrawal; Peter Schu; Guruprasad R. Medigeshi   May, 2013  Adaptor protein complexes-1 and 3 are involved at distinct stages of lavivirus life-cycle  Scientific Reports  10.1038/srep01813  

Tanvi Agrawal; Vats Sharvani; Deepa Nair; Guruprasad R. Medigeshi   July, 2013  Japanese Encephalitis Virus Disrupts Cell-Cell Junctions and affects the Epithelial Permeability Barrier Functions  PLoS ONE  10.1371/journal.pone.0069465  

Nitya Wadhwa; Aruna Chandran; Satinder Aneja; Rakesh Lodha; Sushil K Kabra; Mona K Chaturvedi; Jitender Sodhi; Sean P Fitzwater; Jagdish Chandra; Bimbadhar Rath; Udaypal S Kainth; Savita Saini; Robert E Black; Mathuram Santosham; Shinjini Bhatnagar   May, 2013  Efficacy of zinc givenas an adjunct in the treatment of severe and very severe pneumonia in hospitalized children 2-24 mo of age: a randomize double-blind, placebo-controlled trial  American Journal of Clinical Nutrition  10.3945/_ajcn.112.052951

Octavia S; Salim A; Kurniawan J; Lam C; Leung Q; Ahsan S; Reeves PR; Nair GB; Lan R.  June, 2013  Population structure and evolution of non-01/non-0139 Vibrio cholerae by multilocus sequence typing  PLoS ONE  10.1371/journal.pone.0065342 

Shalini Dwivedi; Bimal K. Das; Satinder Aneja; Suvasini Sharma; Mona K. Chaturvedi; Geoff Kahn; Sean P. Fitzwater; Aruna Chandran; Nitya Wadhwa; Shinjini Bhatnagar   July, 2013  Group B Streptococcal Meningitis in Infants Beyond the Neonatal Period  Indian Journal Of Pediatrics  10.1007/s12098-013-1157-x 

Sanjukta Sen Gupta; G. Balakrish Nair; Narendra Kumar Arora; Nirmal Kumar Ganguly  April, 2013  Vaccine development and deployment:Opportunities and challenges in India  Vaccine  10.1016/j.vaccine.2012.11.079 

Takashi Kurakawa; Hiroyuki Kubota; Hirokazu Tsuji; Kazunori Matsuda; Takuya Takahashi; Thandavarayan Ramamurthy; G. Balakrish Nair; Yoshifumi Takeda; Koji Nomoto  Feb, 2013  Intestinal Enterobacteriaceae and Escherichia coli populations in Japanese adults demonstrated by th reverse transcription-quantitative PCR and the done library analyses  Journal of Microbiological Methods  10.1016/j.mimet.2012.12.008 

Sanjucta Dutta; Sucharita Guin; Santanu Ghosh; Gururaja P. Pazhani; Krishnan Rajendran; Mihir K. Bhattacharya; Yoshifumi Takeda; G. Balakrish Nair; Thandavarayan Ramamurthy  Feb, 2013  Trends in the Prevalence of Diarrheagenic Escherichia coli among Hospitalized Diarrheal Patients in Kolkata,India  PLoS ONE  10.1371/journal.pone.0056068 

Manjula Kalia; Renu Khasa; Manish Sharma; Minu Nain; Sudhanshu Vrati   Jan, 2013  Japanese encephalitis virus infects neuronal cells through a clathrin independent endocytic mechanism  Journal of Virology  10.1128/JVI.01399-12 

V. Haridas; Kullampalayam Shanmugam Rajgokul; Sandhya Sadanandan; Tanvi Agrawal; Vats Sharvani; M. V. S. Gopalakrishna; M. B. Bijesh; Kanhaiya Lal Kumawat; Anirban Basu; Guruprasad R. Medigeshi  Jan, 2013  Bispidine-amino acid conjugates act as a novel scaffold for the design of antivirals that block Japanese encephalitis virus replication  PLoS neglected tropical diseases  10.1371/journal.pntd.0002005 

T. R. Chandola; S. Taneja; N. Goyal; S. S. Rathore; M. B. Appaiahgari; A.Mishra; S. Singh; S. Vrati; N. Bhandari  Jan, 2013  Descriptive epidemiology of rotavirus infection in a community in North India  Epidemiology and Infection  10.1017/S0950268812002762 

Beena, Seema Joshi; Nitin Kumar; Saqib Kidwai; Ramandeep Singh; Diwan S. Rawat  Nov, 2012  Synthesis and antitubercular activity evaluation of novel unsymmetrical cyclohexane-1,2-diamine derivatives  Archiv der Pharmazie  10.1002/ardp.201200219 

Christer Larsson; Brian Luna; Nicole C. Ammerman; Mamoudou Maiga; William R. Bishai  July, 2012  Gene expression of Mycobacterium tuberculosis putative transcription factors whiB1-7 in redox environments  PLoS ONE  10.1371/journal.pone.0037516  

R. Sreejith; Jyoti Rana; Namrata Dudha; Kapila Kumar; Reema Gabrani; Sanjeev K. Sharma; Amita Gupta; Sudhanshu Vrati; Vijay K. Chaudhary; Sanjay Gupta  Oct, 2012  Mapping interactions of Chikungunya virus nonstructural proteins  Virus Research  10.1016/j.virusres.2012.08.006 

Uma Chandra Mouli Natchu; Enju Liu; Christopher Duggan; Gernard Msamanga; Karen Peterson; Said Aboud; Donna Spiegelman; Wafaie W Fawzi  Nov, 2012  Exclusive breastfeeding reduces risk of mortality in infants up to 6 mo ofage born to HIV--positive Tanzanian women  American Journal of Clinical Nutrition  10.3945/_ajcn.111.024356 

Sanjay Gupta; Namrata Dudha; Mohan Babu Appaiahgari; Kaushik Bharati; Dinesh Gupta; Yask Gupta; Kapila Kumar; Reema Gabrani; Sanjeev K. Sharma; Amita Gupta; Vijay K. Chaudhary; Sudhanshu Vrati  August, 2012  Molecular cloning and characterization of Chikungunya virus genes from Indian isolate of 2006 outbreak  Journal of Pharmacy Research   

Bhatnagar S; Wadhwa N; Aneja S; Lodha R; Kabra SK; Natchu UC; Sommerfelt H; Dutta AK; Chandra J; Rath B; Sharma M; Sharma VK; Kumari M; Strand TA  June, 2012  Zinc as adjunct treatment in infants aged between 7 and 120 days with probable serious bacterial infection: a randomised, double-blind, placebo_ controlled trial  Lancet  10.1016/S0140-6736(12)60477-2

Appaiahgari MB; Vrati S  July, 2012  Clinical development of iMOJE -a recombinant Japanese encephalitis vaccine (JE-CV)  Expert Opinion on Biological Therapy  10.1517/14712598.2012.704908 

Agarwal N; Pareek M; Thakur P; Pathak V  April, 2012  Functional characterization of EngA.MS,a P-loop GTPase of Mycobacterium smegmatis  PLoS ONE  10.1371/journal.pone.0034571 

Kuchroo VK; Awasthi A  Sep, 2012  Emerging new roles of Th17 cells  European Journal of Immunology  10.1002/eji.201242872 

Hajela N; Nair GB; Abraham P; Ganguly NK   March, 2012  Health impact of probiotics-vision and opportunities  Gut Pathogens  10.1186/1757-4749-4-1 

Anantpadma M; Vrati S  Feb, 2012  siRNA mediated suppression of Japanese encephalitis virus replication in cultured cells and mice  Journal of antimicrobial therapy  10.1093/jac/dkr487 

Medigeshi GR  Sep, 2011  Mosquito-borne flaviviruses: overview of viral life-cycle and hostvirus interactions  Future Virology  10.2217/fvl.11.85 

Kaushik B; Vrati S  Nov, 2011  Viral vaccines in India: An overview  Proceedings of the National Academy of Sciences India Sect B. Biol. Sci.  10.1007/s40011-011-0014-9  

VashistSBhullarDVratiS  Feb2011  LaProteinCanSimultaneouslyBindtoBoth3-and5-NoncodingRegionsofJapaneseEncephalitisVirusGenome  DNAandCellBiology  10.1089/dna.2010.1114 

KN Beesabathuni; UCM Natchu  August, 2010  Production and Distribution of a Therapeutic Nutritional Product for Severe Acute Malnutrition in India: Opportunities and Challenges  Indian Journal Of Pediatrics  NA 

Appaiahgari MB; Vrati S  Dec, 2010  IMOJEV? : a Yellow Fever virus-based novel Japanese encephalitis vaccine  Vaccine  10.1586/erv.10.139 

Anantpadma M; Stein DA; Vrati S  March, 2010  Inhibition of Japanese encephalitis virus replication in cultured cells and mice by a peptideconjugated morpholino oligomer  Journal of Antimicrobial Chemotherapy  10.1093/jac/dkq074 

Appaiahgari MB; Abdin MZ; Bansal KC; Vrati S  2009  Expression of Japanese encephalitis virus envelope protein intransgenic tobacco plants  Journal of Virological Method  10.1016/j.jviromet.2009.07.002 

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